4.0:Information of module
cngc19
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010089 xylem development BP 3.792e-04
GO:0010087 phloem or xylem histogenesis BP 6.501e-04
GO:0022412 cellular process involved in reproductio... BP 2.216e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0035556 intracellular signal transduction BP 3.317e-04
GO:0031348 negative regulation of defense response BP 3.403e-03
GO:0043207 response to external biotic stimulus BP 4.792e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cngc19		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg)
1 249599_at AT5G37990 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.831 -0.124
2 248729_at AT5G48010 AtTHAS1, Arabidopsis thaliana thalianol synthase 1, THAS, THALIANOL SYNTHASE, THAS1, thalianol synthase 1 0.810 -0.216
3 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 0.787 0.345
4 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.760 0.102
5 249567_at AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.757 0.367
6 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 0.747 0.754
7 254240_at AT4G23496 SP1L5, SPIRAL1-like5 0.745 -0.293
8 260611_at AT2G43670 [Carbohydrate-binding X8 domain superfamily protein] 0.738 -0.856
9 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 0.719 -0.651
10 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.659 -1.140
11 246584_at AT5G14730 unknown 0.651 0.482
12 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.647 -0.246
13 249545_at AT5G38030 [MATE efflux family protein] 0.634 -0.350
14 245226_at AT3G29970 [B12D protein] 0.611 0.280
15 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 0.598 0.164
16 245267_at AT4G14060 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.598 -0.475
17 256875_at AT3G26330 CYP71B37, cytochrome P450, family 71, subfamily B, polypeptide 37 0.590 0.296
18 259010_at AT3G07340 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.584 -0.824
19 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] 0.551 0.226
20 250464_at AT5G10040 unknown 0.543 -0.944
21 259987_at AT1G75030 ATLP-3, thaumatin-like protein 3, TLP-3, thaumatin-like protein 3 0.541 -0.155
22 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.518 -0.129
23 259548_at AT1G35260 MLP165, MLP-like protein 165 0.517 -0.112
24 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] 0.516 -0.465
25 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.493 0.325
26 256176_at AT1G51640 ATEXO70G2, exocyst subunit exo70 family protein G2, EXO70G2, exocyst subunit exo70 family protein G2 0.493 0.082
27 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.486 0.240
28 259653_at AT1G55240 unknown 0.478 -0.923
29 251531_at AT3G58550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.477 -0.086
30 250550_at AT5G07870 [HXXXD-type acyl-transferase family protein] 0.477 0.444
31 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 0.475 -0.434
32 262137_at AT1G77920 TGA7, TGACG sequence-specific binding protein 7 0.475 0.384
33 260025_at AT1G30070 [SGS domain-containing protein] 0.470 0.378
34 267300_at AT2G30140 UGT87A2, UDP-glucosyl transferase 87A2 0.463 1.137
35 258988_at AT3G08890 unknown 0.455 -0.741
36 248049_at AT5G56090 COX15, cytochrome c oxidase 15 0.452 0.668
37 265924_at AT2G18620 [Terpenoid synthases superfamily protein] 0.452 0.044
38 257718_at AT3G18400 anac058, NAC domain containing protein 58, NAC058, NAC domain containing protein 58 0.445 -0.243
39 265327_at AT2G18210 unknown 0.445 0.097
40 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.443 0.589
41 266708_at AT2G03200 [Eukaryotic aspartyl protease family protein] 0.443 -0.477
42 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.436 -0.088
43 247354_at AT5G63590 ATFLS3, FLS3, flavonol synthase 3 0.434 -0.272
44 260784_at AT1G06180 ATMYB13, myb domain protein 13, ATMYBLFGN, MYB13, myb domain protein 13 0.416 -0.636
45 265354_at AT2G16700 ADF5, actin depolymerizing factor 5, ATADF5 0.413 0.024
46 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.409 0.817
47 265341_at AT2G18360 [alpha/beta-Hydrolases superfamily protein] 0.407 0.117
48 245735_at AT1G73410 ATMYB54, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, MYB54, myb domain protein 54 0.402 -0.880
49 253842_at AT4G27860 MEB1, MEMBRANE OF ER BODY 1 0.391 0.155
50 251194_at AT3G62920 unknown 0.387 -0.016
51 261106_at AT1G62990 IXR11, KNAT7, KNOTTED-like homeobox of Arabidopsis thaliana 7 0.386 -0.417
52 257735_at AT3G27400 [Pectin lyase-like superfamily protein] 0.381 1.242
53 263010_at AT1G23330 [alpha/beta-Hydrolases superfamily protein] 0.379 0.048
54 267070_at AT2G41000 [Chaperone DnaJ-domain superfamily protein] 0.375 -0.475
55 251565_at AT3G58190 ASL16, ASYMMETRIC LEAVES 2-LIKE 16, LBD29, lateral organ boundaries-domain 29 0.371 -0.429
56 261537_at AT1G01800 [NAD(P)-binding Rossmann-fold superfamily protein] 0.367 0.657
57 250907_at AT5G03670 TRM28, TON1 Recruiting Motif 28 0.359 -0.785
58 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 0.357 -0.276
59 266464_at AT2G47800 ABCC4, ATP-binding cassette C4, ATMRP4, multidrug resistance-associated protein 4, EST3, MRP4, multidrug resistance-associated protein 4 0.357 0.822
60 254202_at AT4G24140 [alpha/beta-Hydrolases superfamily protein] 0.354 -0.296
61 254919_at AT4G11360 RHA1B, RING-H2 finger A1B 0.353 0.012
62 247193_at AT5G65380 [MATE efflux family protein] 0.352 0.143
63 261813_at AT1G08280 [Glycosyltransferase family 29 (sialyltransferase) family protein] 0.347 0.586
64 250823_at AT5G05180 unknown 0.345 0.397
65 258104_at AT3G23620 [Ribosomal RNA processing Brix domain protein] 0.340 0.663
66 259422_at AT1G13810 [Restriction endonuclease, type II-like superfamily protein] 0.339 0.598
67 249767_at AT5G24090 ATCHIA, chitinase A, CHIA, chitinase A 0.338 -0.335
68 250230_at AT5G13900 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.337 -0.551
69 265383_at AT2G16780 MSI02, MSI2, MULTICOPY SUPPRESSOR OF IRA1 2, NFC02, NFC2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2 0.335 1.182
70 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.589 0.373
71 259182_at AT3G01750 [Ankyrin repeat family protein] -0.579 -0.072
72 247742_at AT5G58980 [Neutral/alkaline non-lysosomal ceramidase] -0.532 -0.415
73 261432_at AT1G07680 unknown -0.527 -0.973
74 249262_at AT5G41720 unknown -0.496 -0.415
75 262792_at AT1G10710 PHS1, POOR HOMOLOGOUS SYNAPSIS 1 -0.483 -0.787
76 251380_at AT3G60700 unknown -0.478 -0.599
77 248078_at AT5G55780 [Cysteine/Histidine-rich C1 domain family protein] -0.476 -0.116
78 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 -0.470 0.973
79 245953_at AT5G28520 [Mannose-binding lectin superfamily protein] -0.469 0.917
80 262530_at AT1G17240 AtRLP2, receptor like protein 2, RLP2, receptor like protein 2 -0.451 0.269
81 253074_at AT4G36140 [disease resistance protein (TIR-NBS-LRR class), putative] -0.445 0.361
82 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.437 -0.069
83 258192_at AT3G29110 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.413 0.595
84 260866_at AT1G43886 [copia-like retrotransposon family, has a 5.3e-165 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] -0.407 -0.454
85 255862_at AT2G30300 [Major facilitator superfamily protein] -0.407 0.751
86 251238_at AT3G62430 [Protein with RNI-like/FBD-like domains] -0.398 -0.862
87 248700_at AT5G48400 ATGLR1.2, GLR1.2, GLUTAMATE RECEPTOR 1.2 -0.393 -0.997
88 256082_at AT1G20720 [RAD3-like DNA-binding helicase protein] -0.389 -0.187
89 251749_at AT3G55690 unknown -0.383 -0.553
90 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 -0.376 -0.061
91 248406_at AT5G51490 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.372 0.654
92 259753_at AT1G71050 HIPP20, heavy metal associated isoprenylated plant protein 20 -0.372 -0.092
93 250414_at AT5G11180 ATGLR2.6, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, GLR2.6, glutamate receptor 2.6 -0.370 -0.591
94 245479_at AT4G16140 [proline-rich family protein] -0.369 0.271
95 254060_at AT4G25350 SHB1, SHORT HYPOCOTYL UNDER BLUE1 -0.367 -0.453
96 266797_at AT2G22840 AtGRF1, growth-regulating factor 1, GRF1, growth-regulating factor 1 -0.366 0.866
97 252017_at AT3G52970 CYP76G1, cytochrome P450, family 76, subfamily G, polypeptide 1 -0.364 -0.496
98 245774_at AT1G30210 ATTCP24, TCP24, TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 -0.362 -0.574
99 249450_at AT5G39440 SnRK1.3, SNF1-related protein kinase 1.3 -0.359 -0.590
100 266376_at AT2G14620 XTH10, xyloglucan endotransglucosylase/hydrolase 10 -0.356 -0.032
101 266151_x_at AT2G12300 [CACTA-like transposase family (Ptta/En/Spm), has a 3.8e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.354 0.860
102 247904_at AT5G57390 AIL5, AINTEGUMENTA-like 5, CHO1, CHOTTO 1, EMK, EMBRYOMAKER, PLT5, PLETHORA 5 -0.345 0.346
103 254174_at AT4G24120 ATYSL1, YELLOW STRIPE LIKE 1, YSL1, YELLOW STRIPE like 1 -0.344 0.545
104 259495_at AT1G15890 [Disease resistance protein (CC-NBS-LRR class) family] -0.340 0.459
105 255307_at AT4G04900 RIC10, ROP-interactive CRIB motif-containing protein 10 -0.339 0.109
106 250037_at AT5G18350 [Disease resistance protein (TIR-NBS-LRR class) family] -0.339 -0.481
107 260270_at AT1G63730 [Disease resistance protein (TIR-NBS-LRR class) family] -0.337 -0.045
108 254671_at AT4G18410 [Mutator-like transposase family, has a 8.7e-30 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.337 0.001
109 261185_at AT1G34540 CYP94D1, cytochrome P450, family 94, subfamily D, polypeptide 1 -0.335 -0.823
110 260004_at AT1G67860 unknown -0.331 0.205
111 253866_at AT4G27480 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.328 -0.085
112 251024_at AT5G02180 [Transmembrane amino acid transporter family protein] -0.325 -0.493
113 256337_at AT1G72060 [serine-type endopeptidase inhibitors] -0.324 -0.214
114 262580_at AT1G15330 [Cystathionine beta-synthase (CBS) protein] -0.323 -0.253
115 247087_at AT5G66330 [Leucine-rich repeat (LRR) family protein] -0.319 0.230
116 261241_at AT1G32950 [Subtilase family protein] -0.318 -0.322
117 251934_at AT3G54070 [Ankyrin repeat family protein] -0.316 -0.521
118 261275_at AT1G26700 ATMLO14, MILDEW RESISTANCE LOCUS O 14, MLO14, MILDEW RESISTANCE LOCUS O 14 -0.316 0.259
119 252736_at AT3G43210 ATNACK2, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, NACK2, NPK1-ACTIVATING KINESIN 2, TES, TETRASPORE -0.313 -0.598
120 259834_at AT1G69570 [Dof-type zinc finger DNA-binding family protein] -0.310 0.748
121 254469_at AT4G20470 unknown -0.309 0.234
122 264749_at AT1G22830 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.308 -0.944
123 261151_at AT1G19650 [Sec14p-like phosphatidylinositol transfer family protein] -0.307 0.320
124 245707_at AT5G04400 anac077, NAC domain containing protein 77, NAC077, NAC domain containing protein 77 -0.307 0.143
125 250520_at AT5G08470 EMB2817, EMBRYO DEFECTIVE 2817, PEX1, peroxisome 1 -0.306 -0.608
126 249297_at AT5G41320 unknown -0.306 0.195
127 265253_at AT2G02020 AtNPF8.4, AtPTR4, NPF8.4, NRT1/ PTR family 8.4, PTR4, peptide transporter 4 -0.305 0.408
128 256620_at AT3G24480 [Leucine-rich repeat (LRR) family protein] -0.297 0.672
129 246080_at AT5G20460 unknown -0.297 -0.833
130 266278_at AT2G29300 [NAD(P)-binding Rossmann-fold superfamily protein] -0.296 0.528
131 267438_at AT2G19050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.295 -0.116
132 245166_at AT2G33170 [Leucine-rich repeat receptor-like protein kinase family protein] -0.295 -0.630
133 250595_at AT5G07770 AtFH16, FH16, formin homolog 16 -0.293 -0.258
134 262971_at AT1G75640 [Leucine-rich receptor-like protein kinase family protein] -0.292 -0.482
135 245084_at AT2G23290 AtMYB70, myb domain protein 70, MYB70, myb domain protein 70 -0.291 0.321
136 254397_at AT4G21690 ATGA3OX3, ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, GA3OX3, gibberellin 3-oxidase 3 -0.290 -0.465
137 248392_at AT5G52050 [MATE efflux family protein] -0.289 0.262