4.0:Information of module
cngc19
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010089 xylem development BP 3.792e-04
GO:0010087 phloem or xylem histogenesis BP 6.501e-04
GO:0022412 cellular process involved in reproductio... BP 2.216e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0035556 intracellular signal transduction BP 3.317e-04
GO:0031348 negative regulation of defense response BP 3.403e-03
GO:0043207 response to external biotic stimulus BP 4.792e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cngc19		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
1 249599_at AT5G37990 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.831 -0.046
2 248729_at AT5G48010 AtTHAS1, Arabidopsis thaliana thalianol synthase 1, THAS, THALIANOL SYNTHASE, THAS1, thalianol synthase 1 0.810 -0.364
3 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 0.787 0.286
4 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.760 0.142
5 249567_at AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.757 0.223
6 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 0.747 0.814
7 254240_at AT4G23496 SP1L5, SPIRAL1-like5 0.745 -0.305
8 260611_at AT2G43670 [Carbohydrate-binding X8 domain superfamily protein] 0.738 -0.942
9 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 0.719 -0.712
10 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.659 -1.170
11 246584_at AT5G14730 unknown 0.651 0.428
12 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.647 -0.268
13 249545_at AT5G38030 [MATE efflux family protein] 0.634 -0.458
14 245226_at AT3G29970 [B12D protein] 0.611 0.335
15 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 0.598 0.017
16 245267_at AT4G14060 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.598 -0.513
17 256875_at AT3G26330 CYP71B37, cytochrome P450, family 71, subfamily B, polypeptide 37 0.590 0.392
18 259010_at AT3G07340 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.584 -0.831
19 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] 0.551 0.387
20 250464_at AT5G10040 unknown 0.543 -0.871
21 259987_at AT1G75030 ATLP-3, thaumatin-like protein 3, TLP-3, thaumatin-like protein 3 0.541 -0.132
22 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.518 -0.145
23 259548_at AT1G35260 MLP165, MLP-like protein 165 0.517 -0.128
24 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] 0.516 -0.601
25 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.493 0.256
26 256176_at AT1G51640 ATEXO70G2, exocyst subunit exo70 family protein G2, EXO70G2, exocyst subunit exo70 family protein G2 0.493 -0.014
27 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.486 0.212
28 259653_at AT1G55240 unknown 0.478 -0.934
29 251531_at AT3G58550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.477 -0.183
30 250550_at AT5G07870 [HXXXD-type acyl-transferase family protein] 0.477 0.297
31 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 0.475 -0.193
32 262137_at AT1G77920 TGA7, TGACG sequence-specific binding protein 7 0.475 0.396
33 260025_at AT1G30070 [SGS domain-containing protein] 0.470 0.416
34 267300_at AT2G30140 UGT87A2, UDP-glucosyl transferase 87A2 0.463 1.248
35 258988_at AT3G08890 unknown 0.455 -0.824
36 248049_at AT5G56090 COX15, cytochrome c oxidase 15 0.452 0.638
37 265924_at AT2G18620 [Terpenoid synthases superfamily protein] 0.452 0.171
38 257718_at AT3G18400 anac058, NAC domain containing protein 58, NAC058, NAC domain containing protein 58 0.445 -0.385
39 265327_at AT2G18210 unknown 0.445 0.018
40 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.443 0.632
41 266708_at AT2G03200 [Eukaryotic aspartyl protease family protein] 0.443 -0.628
42 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.436 0.013
43 247354_at AT5G63590 ATFLS3, FLS3, flavonol synthase 3 0.434 -0.339
44 260784_at AT1G06180 ATMYB13, myb domain protein 13, ATMYBLFGN, MYB13, myb domain protein 13 0.416 -0.605
45 265354_at AT2G16700 ADF5, actin depolymerizing factor 5, ATADF5 0.413 -0.138
46 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.409 0.920
47 265341_at AT2G18360 [alpha/beta-Hydrolases superfamily protein] 0.407 -0.048
48 245735_at AT1G73410 ATMYB54, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, MYB54, myb domain protein 54 0.402 -1.022
49 253842_at AT4G27860 MEB1, MEMBRANE OF ER BODY 1 0.391 0.137
50 251194_at AT3G62920 unknown 0.387 -0.043
51 261106_at AT1G62990 IXR11, KNAT7, KNOTTED-like homeobox of Arabidopsis thaliana 7 0.386 -0.362
52 257735_at AT3G27400 [Pectin lyase-like superfamily protein] 0.381 1.559
53 263010_at AT1G23330 [alpha/beta-Hydrolases superfamily protein] 0.379 -0.047
54 267070_at AT2G41000 [Chaperone DnaJ-domain superfamily protein] 0.375 -0.509
55 251565_at AT3G58190 ASL16, ASYMMETRIC LEAVES 2-LIKE 16, LBD29, lateral organ boundaries-domain 29 0.371 -0.404
56 261537_at AT1G01800 [NAD(P)-binding Rossmann-fold superfamily protein] 0.367 0.678
57 250907_at AT5G03670 TRM28, TON1 Recruiting Motif 28 0.359 -0.679
58 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 0.357 -0.336
59 266464_at AT2G47800 ABCC4, ATP-binding cassette C4, ATMRP4, multidrug resistance-associated protein 4, EST3, MRP4, multidrug resistance-associated protein 4 0.357 0.905
60 254202_at AT4G24140 [alpha/beta-Hydrolases superfamily protein] 0.354 -0.329
61 254919_at AT4G11360 RHA1B, RING-H2 finger A1B 0.353 -0.031
62 247193_at AT5G65380 [MATE efflux family protein] 0.352 0.160
63 261813_at AT1G08280 [Glycosyltransferase family 29 (sialyltransferase) family protein] 0.347 0.725
64 250823_at AT5G05180 unknown 0.345 0.558
65 258104_at AT3G23620 [Ribosomal RNA processing Brix domain protein] 0.340 0.735
66 259422_at AT1G13810 [Restriction endonuclease, type II-like superfamily protein] 0.339 0.680
67 249767_at AT5G24090 ATCHIA, chitinase A, CHIA, chitinase A 0.338 -0.298
68 250230_at AT5G13900 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.337 -0.811
69 265383_at AT2G16780 MSI02, MSI2, MULTICOPY SUPPRESSOR OF IRA1 2, NFC02, NFC2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2 0.335 1.334
70 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.589 0.534
71 259182_at AT3G01750 [Ankyrin repeat family protein] -0.579 -0.203
72 247742_at AT5G58980 [Neutral/alkaline non-lysosomal ceramidase] -0.532 -0.554
73 261432_at AT1G07680 unknown -0.527 -0.963
74 249262_at AT5G41720 unknown -0.496 -0.384
75 262792_at AT1G10710 PHS1, POOR HOMOLOGOUS SYNAPSIS 1 -0.483 -0.953
76 251380_at AT3G60700 unknown -0.478 -0.605
77 248078_at AT5G55780 [Cysteine/Histidine-rich C1 domain family protein] -0.476 -0.247
78 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 -0.470 1.102
79 245953_at AT5G28520 [Mannose-binding lectin superfamily protein] -0.469 0.834
80 262530_at AT1G17240 AtRLP2, receptor like protein 2, RLP2, receptor like protein 2 -0.451 0.162
81 253074_at AT4G36140 [disease resistance protein (TIR-NBS-LRR class), putative] -0.445 0.353
82 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.437 -0.041
83 258192_at AT3G29110 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.413 0.676
84 260866_at AT1G43886 [copia-like retrotransposon family, has a 5.3e-165 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] -0.407 -0.553
85 255862_at AT2G30300 [Major facilitator superfamily protein] -0.407 0.741
86 251238_at AT3G62430 [Protein with RNI-like/FBD-like domains] -0.398 -0.889
87 248700_at AT5G48400 ATGLR1.2, GLR1.2, GLUTAMATE RECEPTOR 1.2 -0.393 -1.094
88 256082_at AT1G20720 [RAD3-like DNA-binding helicase protein] -0.389 -0.211
89 251749_at AT3G55690 unknown -0.383 -0.618
90 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 -0.376 -0.009
91 248406_at AT5G51490 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.372 0.866
92 259753_at AT1G71050 HIPP20, heavy metal associated isoprenylated plant protein 20 -0.372 -0.175
93 250414_at AT5G11180 ATGLR2.6, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, GLR2.6, glutamate receptor 2.6 -0.370 -0.571
94 245479_at AT4G16140 [proline-rich family protein] -0.369 0.158
95 254060_at AT4G25350 SHB1, SHORT HYPOCOTYL UNDER BLUE1 -0.367 -0.405
96 266797_at AT2G22840 AtGRF1, growth-regulating factor 1, GRF1, growth-regulating factor 1 -0.366 0.915
97 252017_at AT3G52970 CYP76G1, cytochrome P450, family 76, subfamily G, polypeptide 1 -0.364 -0.740
98 245774_at AT1G30210 ATTCP24, TCP24, TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 -0.362 -0.544
99 249450_at AT5G39440 SnRK1.3, SNF1-related protein kinase 1.3 -0.359 -0.652
100 266376_at AT2G14620 XTH10, xyloglucan endotransglucosylase/hydrolase 10 -0.356 -0.072
101 266151_x_at AT2G12300 [CACTA-like transposase family (Ptta/En/Spm), has a 3.8e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.354 0.896
102 247904_at AT5G57390 AIL5, AINTEGUMENTA-like 5, CHO1, CHOTTO 1, EMK, EMBRYOMAKER, PLT5, PLETHORA 5 -0.345 0.221
103 254174_at AT4G24120 ATYSL1, YELLOW STRIPE LIKE 1, YSL1, YELLOW STRIPE like 1 -0.344 0.576
104 259495_at AT1G15890 [Disease resistance protein (CC-NBS-LRR class) family] -0.340 0.440
105 255307_at AT4G04900 RIC10, ROP-interactive CRIB motif-containing protein 10 -0.339 0.036
106 250037_at AT5G18350 [Disease resistance protein (TIR-NBS-LRR class) family] -0.339 -0.537
107 260270_at AT1G63730 [Disease resistance protein (TIR-NBS-LRR class) family] -0.337 -0.202
108 254671_at AT4G18410 [Mutator-like transposase family, has a 8.7e-30 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.337 0.069
109 261185_at AT1G34540 CYP94D1, cytochrome P450, family 94, subfamily D, polypeptide 1 -0.335 -0.849
110 260004_at AT1G67860 unknown -0.331 0.335
111 253866_at AT4G27480 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.328 -0.015
112 251024_at AT5G02180 [Transmembrane amino acid transporter family protein] -0.325 -0.591
113 256337_at AT1G72060 [serine-type endopeptidase inhibitors] -0.324 -0.522
114 262580_at AT1G15330 [Cystathionine beta-synthase (CBS) protein] -0.323 -0.380
115 247087_at AT5G66330 [Leucine-rich repeat (LRR) family protein] -0.319 0.193
116 261241_at AT1G32950 [Subtilase family protein] -0.318 -0.334
117 251934_at AT3G54070 [Ankyrin repeat family protein] -0.316 -0.571
118 261275_at AT1G26700 ATMLO14, MILDEW RESISTANCE LOCUS O 14, MLO14, MILDEW RESISTANCE LOCUS O 14 -0.316 0.375
119 252736_at AT3G43210 ATNACK2, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, NACK2, NPK1-ACTIVATING KINESIN 2, TES, TETRASPORE -0.313 -0.483
120 259834_at AT1G69570 [Dof-type zinc finger DNA-binding family protein] -0.310 0.727
121 254469_at AT4G20470 unknown -0.309 0.011
122 264749_at AT1G22830 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.308 -0.945
123 261151_at AT1G19650 [Sec14p-like phosphatidylinositol transfer family protein] -0.307 0.373
124 245707_at AT5G04400 anac077, NAC domain containing protein 77, NAC077, NAC domain containing protein 77 -0.307 0.094
125 250520_at AT5G08470 EMB2817, EMBRYO DEFECTIVE 2817, PEX1, peroxisome 1 -0.306 -0.762
126 249297_at AT5G41320 unknown -0.306 0.164
127 265253_at AT2G02020 AtNPF8.4, AtPTR4, NPF8.4, NRT1/ PTR family 8.4, PTR4, peptide transporter 4 -0.305 0.410
128 256620_at AT3G24480 [Leucine-rich repeat (LRR) family protein] -0.297 0.711
129 246080_at AT5G20460 unknown -0.297 -0.703
130 266278_at AT2G29300 [NAD(P)-binding Rossmann-fold superfamily protein] -0.296 0.505
131 267438_at AT2G19050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.295 -0.085
132 245166_at AT2G33170 [Leucine-rich repeat receptor-like protein kinase family protein] -0.295 -0.659
133 250595_at AT5G07770 AtFH16, FH16, formin homolog 16 -0.293 -0.244
134 262971_at AT1G75640 [Leucine-rich receptor-like protein kinase family protein] -0.292 -0.422
135 245084_at AT2G23290 AtMYB70, myb domain protein 70, MYB70, myb domain protein 70 -0.291 0.428
136 254397_at AT4G21690 ATGA3OX3, ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, GA3OX3, gibberellin 3-oxidase 3 -0.290 -0.568
137 248392_at AT5G52050 [MATE efflux family protein] -0.289 0.232