4.0:Information of module
P.p 10.5hai
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 2.322e-54
GO:0002376 immune system process BP 1.116e-50
GO:0010200 response to chitin BP 6.192e-44
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009411 response to UV BP 8.336e-04
GO:0009605 response to external stimulus BP 1.070e-03
GO:0010224 response to UV-B BP 2.380e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
P.p 10.5hai		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 253060_at AT4G37710 [VQ motif-containing protein] 1.709 -1.482
2 249333_at AT5G40990 GLIP1, GDSL lipase 1 1.496 -0.847
3 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 1.491 -0.139
4 258606_at AT3G02840 [ARM repeat superfamily protein] 1.420 -0.781
5 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 1.371 0.664
6 251456_at AT3G60120 BGLU27, beta glucosidase 27 1.356 -1.063
7 245082_at AT2G23270 unknown 1.337 -0.190
8 260394_at AT1G74080 ATMYB122, MYB DOMAIN PROTEIN 122, MYB122, myb domain protein 122 1.334 -0.344
9 264774_at AT1G22890 unknown 1.327 -0.617
10 253044_at AT4G37290 unknown 1.320 -0.520
11 253796_at AT4G28460 unknown 1.286 0.369
12 249896_at AT5G22530 unknown 1.237 -0.566
13 261475_at AT1G14550 [Peroxidase superfamily protein] 1.221 0.401
14 260406_at AT1G69920 ATGSTU12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, GSTU12, glutathione S-transferase TAU 12 1.214 0.911
15 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 1.204 0.261
16 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 1.202 -0.247
17 254660_at AT4G18250 [receptor serine/threonine kinase, putative] 1.196 -0.123
18 258130_at AT3G24510 [Defensin-like (DEFL) family protein] 1.195 -0.458
19 256499_at AT1G36640 unknown 1.192 -0.775
20 245755_at AT1G35210 unknown 1.188 -0.882
21 251950_at AT3G53600 [C2H2-type zinc finger family protein] 1.169 -1.255
22 256989_at AT3G28580 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 1.159 -0.543
23 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 1.148 -0.811
24 247215_at AT5G64905 PROPEP3, elicitor peptide 3 precursor 1.132 -0.256
25 251689_at AT3G56500 [serine-rich protein-related] 1.127 -0.957
26 261474_at AT1G14540 PER4, peroxidase 4 1.108 0.106
27 249586_at AT5G37840 unknown 1.090 -0.433
28 254898_at AT4G11480 CRK32, cysteine-rich RLK (RECEPTOR-like protein kinase) 32 1.089 -1.018
29 261763_at AT1G15520 ABCG40, ATP-binding cassette G40, ATABCG40, Arabidopsis thaliana ATP-binding cassette G40, ATPDR12, PLEIOTROPIC DRUG RESISTANCE 12, PDR12, pleiotropic drug resistance 12 1.087 0.307
30 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] 1.086 -0.408
31 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 1.073 -0.726
32 260804_at AT1G78410 [VQ motif-containing protein] 1.066 -0.095
33 255945_at AT5G28610 unknown 1.053 -0.297
34 246293_at AT3G56710 SIB1, sigma factor binding protein 1 1.045 -0.987
35 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 1.036 -0.308
36 263198_at AT1G53990 GLIP3, GDSL-motif lipase 3 1.025 -1.294
37 259033_at AT3G09405 [Pectinacetylesterase family protein] 1.019 0.161
38 254905_at AT4G11170 RMG1, Resistance Methylated Gene 1 1.018 -0.586
39 255339_at AT4G04480 unknown 1.009 -0.159
40 245875_at AT1G26240 [Proline-rich extensin-like family protein] 0.992 0.007
41 257918_at AT3G23230 AtERF98, AtTDR1, ERF98, Ethylene Response Factor 98, TDR1, Transcriptional Regulator of Defense Response 1 0.988 0.470
42 247685_at AT5G59680 [Leucine-rich repeat protein kinase family protein] 0.982 -0.322
43 258364_at AT3G14225 GLIP4, GDSL-motif lipase 4 0.979 -0.497
44 258338_at AT3G16150 ASPGB1, asparaginase B1 0.974 1.012
45 247145_at AT5G65600 LecRK-IX.2, L-type lectin receptor kinase IX.2 0.967 -0.880
46 257536_at AT3G02800 AtPFA-DSP3, PFA-DSP3, plant and fungi atypical dual-specificity phosphatase 3 0.965 -0.238
47 247913_at AT5G57510 unknown 0.963 -0.953
48 259428_at AT1G01560 ATMPK11, MAP kinase 11, MPK11, MAP kinase 11 0.959 -0.835
49 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 0.956 -0.476
50 255753_at AT1G18570 AtMYB51, myb domain protein 51, BW51A, BW51B, HIG1, HIGH INDOLIC GLUCOSINOLATE 1, MYB51, myb domain protein 51 0.956 0.258
51 254249_at AT4G23280 CRK20, cysteine-rich RLK (RECEPTOR-like protein kinase) 20 0.955 -0.396
52 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 0.949 0.355
53 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.943 -0.801
54 265723_at AT2G32140 [transmembrane receptors] 0.939 -0.512
55 263147_at AT1G53980 [Ubiquitin-like superfamily protein] 0.938 -0.907
56 259439_at AT1G01480 ACS2, 1-amino-cyclopropane-1-carboxylate synthase 2, AT-ACC2 0.935 -0.747
57 254014_at AT4G26120 [Ankyrin repeat family protein / BTB/POZ domain-containing protein] 0.934 -0.810
58 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.929 -1.101
59 250796_at AT5G05300 unknown 0.928 -0.121
60 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.924 -0.007
61 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 0.922 -0.582
62 254408_at AT4G21390 B120 0.919 -0.731
63 266010_at AT2G37430 ZAT11, zinc finger of Arabidopsis thaliana 11 0.917 0.434
64 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.911 -0.520
65 254292_at AT4G23030 [MATE efflux family protein] 0.910 0.371
66 245840_at AT1G58420 [Uncharacterised conserved protein UCP031279] 0.904 0.162
67 253827_at AT4G28085 unknown 0.891 -0.680
68 257206_at AT3G16530 [Legume lectin family protein] 0.888 0.716
69 246370_at AT1G51920 unknown 0.886 -1.104
70 263948_at AT2G35980 ATNHL10, ARABIDOPSIS NDR1/HIN1-LIKE 10, NHL10, NDR1/HIN1-LIKE, YLS9, YELLOW-LEAF-SPECIFIC GENE 9 0.880 -0.867
71 249202_at AT5G42580 CYP705A12, cytochrome P450, family 705, subfamily A, polypeptide 12 -0.948 -0.324
72 250091_at AT5G17340 [Putative membrane lipoprotein] -0.932 -0.616
73 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.836 0.875
74 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 -0.788 0.627
75 247323_at AT5G64170 LNK1, night light-inducible and clock-regulated 1 -0.677 0.328
76 247025_at AT5G67030 ABA1, ABA DEFICIENT 1, ATABA1, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ATZEP, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, IBS3, IMPAIRED IN BABA-INDUCED STERILITY 3, LOS6, LOW EXPRESSION OF OSMOTIC STRESS-RESPONSIVE GENES 6, NPQ2, NON-PHOTOCHEMICAL QUENCHING 2, ZEP, ZEAXANTHIN EPOXIDASE -0.585 0.424
77 245392_at AT4G15680 [Thioredoxin superfamily protein] -0.585 -0.177
78 247921_at AT5G57660 ATCOL5, BBX6, B-box domain protein 6, COL5, CONSTANS-like 5 -0.562 0.449
79 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 -0.559 0.594
80 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] -0.544 -0.148
81 247779_at AT5G58760 DDB2, damaged DNA binding 2 -0.532 0.061
82 258652_at AT3G09910 ATRAB18C, ATRABC2B, RAB GTPase homolog C2B, RABC2b, RAB GTPase homolog C2B -0.531 -0.663
83 263574_at AT2G16990 [Major facilitator superfamily protein] -0.497 -0.927
84 254729_at AT4G13700 ATPAP23, PAP23, purple acid phosphatase 23 -0.429 -1.000
85 247214_at AT5G64850 unknown -0.404 -0.266
86 245130_at AT2G45340 [Leucine-rich repeat protein kinase family protein] -0.402 0.937
87 264360_at AT1G03310 AtBE2, ATISA2, ARABIDOPSIS THALIANA ISOAMYLASE 2, BE2, BRANCHING ENZYME 2, DBE1, debranching enzyme 1, ISA2 -0.397 0.978
88 266900_at AT2G34610 unknown -0.388 -0.034
89 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] -0.377 -0.313
90 246998_at AT5G67370 CGLD27, CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 -0.377 0.466
91 254631_at AT4G18610 LSH9, LIGHT SENSITIVE HYPOCOTYLS 9 -0.368 -1.184
92 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] -0.357 -1.093
93 251713_at AT3G56080 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.355 0.094
94 245505_at AT4G15690 [Thioredoxin superfamily protein] -0.349 -1.064
95 261803_at AT1G30500 NF-YA7, nuclear factor Y, subunit A7 -0.341 0.628
96 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 -0.334 0.637
97 259596_at AT1G28130 GH3.17 -0.327 0.478
98 266797_at AT2G22840 AtGRF1, growth-regulating factor 1, GRF1, growth-regulating factor 1 -0.321 1.137
99 253053_at AT4G37470 KAI2, KARRIKIN INSENSITIVE 2 -0.315 0.954
100 246231_at AT4G37080 unknown -0.287 0.502
101 264605_at AT1G04550 BDL, BODENLOS, IAA12, indole-3-acetic acid inducible 12 -0.279 -0.315
102 245204_at AT5G12270 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.272 -0.992
103 266555_at AT2G46270 GBF3, G-box binding factor 3 -0.269 -0.142
104 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 -0.268 0.737
105 246076_at AT5G20280 ATSPS1F, sucrose phosphate synthase 1F, SPS1F, sucrose phosphate synthase 1F, SPSA1, sucrose-phosphate synthase A1 -0.268 0.508
106 264402_at AT2G25140 CLPB-M, CASEIN LYTIC PROTEINASE B-M, CLPB4, casein lytic proteinase B4, HSP98.7, HEAT SHOCK PROTEIN 98.7 -0.264 0.834
107 255764_at AT1G16720 HCF173, high chlorophyll fluorescence phenotype 173 -0.260 0.270
108 262831_at AT1G14730 [Cytochrome b561/ferric reductase transmembrane protein family] -0.258 -0.009
109 246330_at AT3G43600 AAO2, aldehyde oxidase 2, AO3, aldehyde oxidase 3, AOgamma, Aldehyde oxidase gamma, atAO-2, Arabidopsis thaliana aldehyde oxidase 2, AtAO3, Arabidopsis thaliana aldehyde oxidase 3 -0.256 0.893
110 251083_at AT5G01590 TIC56, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 56 -0.249 0.550
111 246110_at AT5G20140 AtHBP5, HBP5, haem-binding protein 5 -0.242 0.446
112 257313_at AT3G26520 GAMMA-TIP2, SITIP, SALT-STRESS INDUCIBLE TONOPLAST INTRINSIC PROTEIN, TIP1;2, TIP2, tonoplast intrinsic protein 2 -0.240 0.286
113 260629_at AT1G62330 [O-fucosyltransferase family protein] -0.238 -0.164
114 256816_at AT3G21400 unknown -0.232 1.058
115 266054_at AT2G40640 [RING/U-box superfamily protein] -0.222 -0.286
116 254520_at AT4G19960 ATKUP9, HAK9, KT9, KUP9, K+ uptake permease 9 -0.221 -0.377
117 247156_at AT5G65760 [Serine carboxypeptidase S28 family protein] -0.216 0.322
118 258933_at AT3G09980 unknown -0.213 0.840
119 252241_at AT3G50050 [Eukaryotic aspartyl protease family protein] -0.212 -0.528
120 258128_at AT3G24590 PLSP1, plastidic type i signal peptidase 1 -0.206 0.541
121 263249_at AT2G31360 ADS2, 16:0delta9 desaturase 2, AtADS2 -0.203 0.800
122 245165_at AT2G33180 unknown -0.201 0.930
123 245427_at AT4G17550 AtG3Pp4, glycerol-3-phosphate permease 4, G3Pp4, glycerol-3-phosphate permease 4 -0.189 0.872
124 258485_at AT3G02630 [Plant stearoyl-acyl-carrier-protein desaturase family protein] -0.189 0.187
125 264250_at AT1G78680 ATGGH2, gamma-glutamyl hydrolase 2, GGH2, gamma-glutamyl hydrolase 2 -0.184 0.463
126 259070_at AT3G11670 DGD1, DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1 -0.181 0.044
127 260055_at AT1G78150 unknown -0.181 1.425
128 266015_at AT2G24190 SDR2, short-chain dehydrogenase/reductase 2 -0.178 0.971
129 264687_at AT1G09850 XBCP3, xylem bark cysteine peptidase 3 -0.176 0.789
130 248558_at AT5G49990 [Xanthine/uracil permease family protein] -0.176 -0.053
131 263673_at AT2G04800 unknown -0.174 -0.241
132 251078_at AT5G01990 [Auxin efflux carrier family protein] -0.172 -0.047
133 256156_at AT3G08510 ATPLC2, phospholipase C 2, PLC2, phospholipase C 2 -0.172 0.307
134 259000_at AT3G01860 unknown -0.171 0.195
135 248454_at AT5G51350 MOL1, MORE LATERAL GROWTH1 -0.171 0.292
136 255735_at AT1G25520 [Uncharacterized protein family (UPF0016)] -0.170 0.008
137 257798_at AT3G15950 NAI2 -0.168 1.174
138 253481_at AT4G31990 AAT3, ASPARTATE AMINOTRANSFERASE DEFICIENT 3, ASP5, aspartate aminotransferase 5, ATAAT1 -0.166 0.951
139 262247_at AT1G48420 ACD1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, ATACD1, A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, AtDCD, D-CDES, D-cysteine desulfhydrase, DCD, D-cysteine desulfhydrase -0.166 0.413