4.0:Information of module
lug3 leaves
In comparison with Col-0 SA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006412 translation BP 1.801e-17
GO:1901576 organic substance biosynthetic process BP 6.010e-16
GO:0009058 biosynthetic process BP 1.995e-15
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044248 cellular catabolic process BP 7.652e-16
GO:1901575 organic substance catabolic process BP 1.754e-14
GO:0009056 catabolic process BP 2.546e-14
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
lug3 leaves		 Log2 signal ratio
Col-0 SA
1 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.797 -0.237
2 245451_at AT4G16890 BAL, BALL, SNC1, SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 0.789 -0.012
3 260028_at AT1G29980 unknown 0.584 -0.333
4 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.521 -0.070
5 245456_at AT4G16950 RPP5, RECOGNITION OF PERONOSPORA PARASITICA 5 0.492 -0.001
6 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.489 -0.057
7 254798_at AT4G13050 [Acyl-ACP thioesterase] 0.473 -0.132
8 258764_at AT3G10720 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.461 -0.119
9 264343_at AT1G11850 unknown 0.456 -0.166
10 248179_at AT5G54380 THE1, THESEUS1 0.438 -0.135
11 265656_at AT2G13820 AtXYP2, XYP2, xylogen protein 2 0.424 -0.250
12 251829_at AT3G55020 [Ypt/Rab-GAP domain of gyp1p superfamily protein] 0.419 0.070
13 264611_at AT1G04680 [Pectin lyase-like superfamily protein] 0.418 -0.492
14 260982_at AT1G53520 AtFAP3, FAP3, fatty-acid-binding protein 3 0.388 -0.297
15 253925_at AT4G26690 GDPDL3, Glycerophosphodiester phosphodiesterase (GDPD) like 3, GPDL2, GLYCEROPHOSPHODIESTERASE-LIKE 2, MRH5, MUTANT ROOT HAIR 5, SHV3, SHAVEN 3 0.386 -0.074
16 258897_at AT3G05730 [LOCATED IN: endomembrane system] 0.372 -0.174
17 255937_at AT1G12610 DDF1, DWARF AND DELAYED FLOWERING 1 0.370 -0.500
18 253696_at AT4G29740 ATCKX4, CKX4, cytokinin oxidase 4 0.347 0.249
19 265377_at AT2G05790 [O-Glycosyl hydrolases family 17 protein] 0.330 -0.191
20 262376_at AT1G72970 EDA17, embryo sac development arrest 17, HTH, HOTHEAD 0.319 -0.215
21 257644_at AT3G25780 AOC3, allene oxide cyclase 3 0.318 -0.118
22 259466_at AT1G19050 ARR7, response regulator 7 0.310 -0.232
23 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.308 0.130
24 258641_at AT3G08030 unknown 0.304 -0.143
25 250434_at AT5G10390 H3.1, histone 3.1 0.286 -0.070
26 257999_at AT3G27540 [beta-1,4-N-acetylglucosaminyltransferase family protein] 0.282 -0.050
27 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 0.281 -0.031
28 250939_at AT5G03040 iqd2, IQ-domain 2 0.280 -0.244
29 259680_at AT1G77690 LAX3, like AUX1 3 0.279 -0.254
30 257219_at AT3G14930 HEME1 0.277 -0.076
31 246505_at AT5G16250 unknown 0.275 -0.084
32 250366_at AT5G11420 unknown 0.271 0.005
33 260944_at AT1G45130 AtBGAL5, BGAL5, beta-galactosidase 5 0.271 -0.042
34 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.269 0.074
35 264315_at AT1G70370 PG2, polygalacturonase 2 0.269 -0.169
36 253891_at AT4G27720 [Major facilitator superfamily protein] 0.266 -0.253
37 262086_at AT1G56050 [GTP-binding protein-related] 0.265 -0.431
38 250470_at AT5G10160 [Thioesterase superfamily protein] 0.265 -0.222
39 267220_at AT2G02500 ATMEPCT, ISPD, MCT, 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE 0.264 -0.109
40 247037_at AT5G67070 RALFL34, ralf-like 34 0.263 -0.239
41 266334_at AT2G32380 [Transmembrane protein 97, predicted] 0.263 0.024
42 254737_at AT4G13840 CER26, ECERIFERUM 26 0.262 -0.001
43 249129_at AT5G43080 CYCA3;1, Cyclin A3;1 0.259 0.021
44 258003_at AT3G29030 ATEXP5, ARABIDOPSIS THALIANA EXPANSIN 5, ATEXPA5, ARABIDOPSIS THALIANA EXPANSIN A5, ATHEXP ALPHA 1.4, EXP5, EXPANSIN 5, EXPA5, expansin A5 0.259 -0.096
45 253480_at AT4G31840 AtENODL15, ENODL15, early nodulin-like protein 15 0.254 -0.110
46 253405_at AT4G32800 [Integrase-type DNA-binding superfamily protein] 0.251 -0.161
47 254815_at AT4G12420 SKU5 0.247 -0.183
48 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] 0.244 -0.039
49 253485_at AT4G31800 ATWRKY18, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY18, WRKY DNA-binding protein 18 0.239 0.021
50 264774_at AT1G22890 unknown 0.237 -0.315
51 254432_at AT4G20830 [FAD-binding Berberine family protein] 0.237 0.028
52 256787_at AT3G13790 ATBFRUCT1, ATCWINV1, ARABIDOPSIS THALIANA CELL WALL INVERTASE 1 0.234 0.070
53 259072_at AT3G11700 FLA18, FASCICLIN-like arabinogalactan protein 18 precursor 0.231 -0.086
54 258155_at AT3G18130 RACK1C, receptor for activated C kinase 1C, RACK1C_AT, receptor for activated C kinase 1C 0.230 -0.132
55 255714_at AT4G00300 [fringe-related protein] 0.228 -0.052
56 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.228 -0.123
57 266921_at AT2G45970 CYP86A8, cytochrome P450, family 86, subfamily A, polypeptide 8, LCR, LACERATA 0.227 -0.067
58 259592_at AT1G27950 LTPG1, glycosylphosphatidylinositol-anchored lipid protein transfer 1 0.225 -0.210
59 258222_at AT3G15680 [Ran BP2/NZF zinc finger-like superfamily protein] 0.222 -0.220
60 267355_at AT2G39900 WLIM2a, WLIM2a 0.220 -0.025
61 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 0.218 0.074
62 265103_at AT1G31070 GlcNAc1pUT1, N-acetylglucosamine-1-phosphate uridylyltransferase 1 0.217 -0.029
63 252866_at AT4G39840 unknown 0.215 -0.216
64 256469_at AT1G32540 LOL1, lsd one like 1 0.214 -0.213
65 245828_at AT1G57820 ORTH2, ORTHRUS 2, VIM1, VARIANT IN METHYLATION 1 0.212 0.135
66 255411_at AT4G03110 AtBRN1, AtRBP-DR1, RNA-binding protein-defense related 1, BRN1, Bruno-like 1, RBP-DR1, RNA-binding protein-defense related 1 0.211 -0.060
67 256983_at AT3G13470 Cpn60beta2, chaperonin-60beta2 0.210 -0.104
68 263432_at AT2G22230 [Thioesterase superfamily protein] 0.210 -0.133
69 250968_at AT5G02890 [HXXXD-type acyl-transferase family protein] 0.208 0.043
70 245479_at AT4G16140 [proline-rich family protein] 0.208 -0.181
71 245002_at ATCG00270 PSBD, photosystem II reaction center protein D 0.207 -0.113
72 249466_at AT5G39740 OLI7, OLIGOCELLULA 7, RPL5B, ribosomal protein L5 B 0.204 -0.115
73 263765_at AT2G21540 ATSFH3, SEC14-LIKE 3, SFH3, SEC14-like 3 0.201 0.041
74 245318_at AT4G16980 [arabinogalactan-protein family] 0.201 -0.174
75 245368_at AT4G15510 PPD1, PsbP-Domain Protein1 0.200 -0.194
76 262830_at AT1G14700 ATPAP3, PAP3, purple acid phosphatase 3 0.199 -0.436
77 248074_at AT5G55730 FLA1, FASCICLIN-like arabinogalactan 1 0.198 -0.145
78 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 0.198 0.023
79 264262_at AT1G09200 H3.1, histone 3.1 0.198 -0.007
80 259358_at AT1G13250 GATL3, galacturonosyltransferase-like 3 0.193 0.117
81 261570_at AT1G01120 KCS1, 3-ketoacyl-CoA synthase 1 0.192 -0.071
82 247470_at AT5G62220 ATGT18, glycosyltransferase 18, GT18, glycosyltransferase 18, XLT2, Xyloglucan L-side chain galactosylTransferase position 2 0.191 0.033
83 258658_at AT3G09820 ADK1, adenosine kinase 1, ATADK1 0.191 -0.057
84 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 0.190 -0.271
85 249209_at AT5G42620 [metalloendopeptidases] 0.188 0.039
86 264518_at AT1G09980 [Putative serine esterase family protein] 0.188 -0.096
87 262708_at AT1G16190 RAD23A, RADIATION SENSITIVE23A 0.187 0.027
88 245454_at AT4G16920 [Disease resistance protein (TIR-NBS-LRR class) family] -0.836 0.053
89 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 -0.811 -0.008
90 254660_at AT4G18250 [receptor serine/threonine kinase, putative] -0.786 0.444
91 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 -0.712 0.092
92 260140_at AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 -0.705 0.403
93 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 -0.687 -0.020
94 254566_at AT4G19240 unknown -0.670 0.079
95 256789_at AT3G13672 SINA2 -0.527 -0.615
96 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] -0.512 0.133
97 254482_at AT4G20370 TSF, TWIN SISTER OF FT -0.510 0.145
98 253443_at AT4G32551 LUG, LEUNIG, RON2, ROTUNDA 2 -0.490 0.025
99 254189_at AT4G24000 ATCSLG2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, CSLG2, cellulose synthase like G2 -0.458 0.025
100 267036_at AT2G38465 unknown -0.444 0.175
101 255340_at AT4G04490 CRK36, cysteine-rich RLK (RECEPTOR-like protein kinase) 36 -0.440 -0.117
102 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] -0.439 0.059
103 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.432 -0.045
104 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 -0.422 0.203
105 262615_at AT1G13950 ATELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A-1, EIF-5A, EIF5A, EUKARYOTIC ELONGATION FACTOR 5A, ELF5A-1, eukaryotic elongation factor 5A-1 -0.418 0.143
106 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 -0.404 0.049
107 261077_at AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) -0.395 0.147
108 254596_at AT4G18975 [Pentatricopeptide repeat (PPR) superfamily protein] -0.381 0.026
109 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.381 0.108
110 245302_at AT4G17695 KAN3, KANADI 3 -0.381 0.185
111 245310_at AT4G13950 RALFL31, ralf-like 31 -0.379 -0.003
112 245280_at AT4G16845 VRN2, REDUCED VERNALIZATION RESPONSE 2 -0.375 0.081
113 254306_at AT4G22330 ATCES1 -0.375 0.004
114 261222_at AT1G20120 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.367 0.027
115 245628_at AT1G56650 ATMYB75, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, production of anthocyanin pigment 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1 -0.366 0.123
116 250485_at AT5G09990 PROPEP5, elicitor peptide 5 precursor -0.363 0.061
117 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 -0.363 -0.024
118 249174_at AT5G42900 COR27, cold regulated gene 27 -0.357 0.163
119 247212_at AT5G65040 unknown -0.353 0.175
120 266480_at AT2G31130 unknown -0.351 0.030
121 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 -0.350 0.014
122 246968_at AT5G24870 [RING/U-box superfamily protein] -0.350 0.049
123 260933_at AT1G02470 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.345 0.091
124 266355_at AT2G01400 unknown -0.314 -0.092
125 264522_at AT1G10050 [glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein] -0.312 0.110
126 251012_at AT5G02580 unknown -0.300 -0.074
127 251191_at AT3G62590 [alpha/beta-Hydrolases superfamily protein] -0.298 0.165
128 248994_at AT5G45250 RPS4, RESISTANT TO P. SYRINGAE 4 -0.287 0.078
129 251066_at AT5G01880 DAFL2, DAF-Like gene 2 -0.277 -0.035
130 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.271 0.143
131 261272_at AT1G26665 [Mediator complex, subunit Med10] -0.263 0.044
132 260784_at AT1G06180 ATMYB13, myb domain protein 13, ATMYBLFGN, MYB13, myb domain protein 13 -0.262 0.351
133 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 -0.262 -0.331
134 262918_at AT1G65000 unknown -0.259 0.108
135 255487_at AT4G02610 [Aldolase-type TIM barrel family protein] -0.257 -0.068
136 253640_at AT4G30630 unknown -0.253 0.179
137 247063_at AT5G66820 unknown -0.252 -0.006
138 245331_at AT4G14410 bHLH104, basic Helix-Loop-Helix 104 -0.252 0.062
139 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 -0.251 -0.319
140 266839_at AT2G25930 ELF3, EARLY FLOWERING 3, PYK20 -0.249 0.086
141 252888_at AT4G39210 APL3 -0.248 0.031
142 254965_at AT4G11090 TBL23, TRICHOME BIREFRINGENCE-LIKE 23 -0.246 -0.008
143 262905_at AT1G59730 ATH7, thioredoxin H-type 7, TH7, thioredoxin H-type 7 -0.246 -0.231
144 258756_at AT3G11960 [Cleavage and polyadenylation specificity factor (CPSF) A subunit protein] -0.244 0.030
145 251929_at AT3G53920 SIG3, SIGMA FACTOR 3, SIGC, RNApolymerase sigma-subunit C -0.241 -0.148
146 254350_at AT4G22280 [F-box/RNI-like superfamily protein] -0.241 0.003
147 264091_at AT1G79110 BRG2, BOI-related gene 2 -0.238 0.117
148 247514_at AT5G61640 ATMSRA1, ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, PMSR1, peptidemethionine sulfoxide reductase 1 -0.238 -0.004
149 251644_at AT3G57540 [Remorin family protein] -0.234 0.085
150 255625_at AT4G01120 ATBZIP54, BASIC REGION/LEUCINE ZIPPER MOTIF 5, GBF2, G-box binding factor 2 -0.233 0.014
151 258312_at AT3G16170 AAE13, acyl activating enzyme 13 -0.231 0.049
152 257369_at AT2G35550 ATBPC7, BASIC PENTACYSTEINE 7, BBR, BPC7, basic pentacysteine 7 -0.229 0.107
153 251393_at AT3G60640 ATG8G, AUTOPHAGY 8G -0.229 0.060
154 246909_at AT5G25770 [alpha/beta-Hydrolases superfamily protein] -0.223 0.090
155 256220_at AT1G56230 unknown -0.223 0.071
156 254253_at AT4G23320 CRK24, cysteine-rich RLK (RECEPTOR-like protein kinase) 24 -0.223 0.061
157 257580_at AT3G06210 [ARM repeat superfamily protein] -0.222 0.091
158 264083_at AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 -0.221 -0.030
159 250597_at AT5G07680 ANAC079, Arabidopsis NAC domain containing protein 79, ANAC080, NAC domain containing protein 80, ATNAC4, NAC080, NAC domain containing protein 80, NAC4 -0.219 0.366
160 253236_at AT4G34370 ARI1, ARIADNE 1, ATARI1, ARABIDOPSIS ARIADNE 1 -0.219 0.076
161 246262_at AT1G31790 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.218 -0.046
162 256061_at AT1G07040 unknown -0.216 0.022
163 262888_at AT1G14790 AtRDR1, ATRDRP1, RDR1, RNA-dependent RNA polymerase 1 -0.216 0.139
164 250487_at AT5G09690 ATMGT7, ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, MGT7, magnesium transporter 7, MRS2-7 -0.216 -0.034
165 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.216 -0.014
166 251175_at AT3G63250 ATHMT-2, HOMOCYSTEINE METHYLTRANSFERASE-2, HMT-2, HOMOCYSTEINE METHYLTRANSFERASE-2, HMT2, homocysteine methyltransferase 2 -0.215 -0.110
167 257923_at AT3G23160 unknown -0.214 -0.094
168 261145_at AT1G19730 ATH4, thioredoxin H-type 4, ATTRX4 -0.214 0.045
169 247835_at AT5G57910 unknown -0.212 0.052
170 245390_at AT4G17650 [Polyketide cyclase / dehydrase and lipid transport protein] -0.211 0.037
171 264405_at AT1G10210 ATMPK1, mitogen-activated protein kinase 1, MPK1, mitogen-activated protein kinase 1 -0.210 0.222
172 261845_at AT1G15960 ATNRAMP6, NRAMP6, NRAMP metal ion transporter 6 -0.210 -0.040
173 250363_at AT5G11390 WIT1, WPP domain-interacting protein 1 -0.210 0.221