4.0:Information of module
ga1 24h seed
In comparison with spx1 spx2 complete help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044710 single-organism metabolic process BP 1.437e-26
GO:0050896 response to stimulus BP 3.724e-26
GO:0009628 response to abiotic stimulus BP 1.061e-22
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019637 organophosphate metabolic process BP 3.134e-06
GO:0090407 organophosphate biosynthetic process BP 5.669e-06
GO:0034660 ncRNA metabolic process BP 1.586e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ga1 24h seed		 Log2 signal ratio
spx1 spx2 complete
1 254452_at AT4G21100 DDB1B, damaged DNA binding protein 1B 1.122 0.028
2 265290_at AT2G22590 [UDP-Glycosyltransferase superfamily protein] 0.770 0.685
3 250798_at AT5G05340 PRX52, peroxidase 52 0.764 0.350
4 267064_at AT2G41110 ATCAL5, CAM2, calmodulin 2 0.585 0.030
5 267590_at AT2G39700 ATEXP4, ATEXPA4, expansin A4, ATHEXP ALPHA 1.6, EXPA4, expansin A4 0.516 -0.073
6 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.470 0.309
7 261819_at AT1G11410 [S-locus lectin protein kinase family protein] 0.468 -0.008
8 251382_at AT3G60730 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.448 0.017
9 262744_at AT1G28680 [HXXXD-type acyl-transferase family protein] 0.447 0.127
10 249719_at AT5G35735 [Auxin-responsive family protein] 0.438 0.311
11 260140_at AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 0.414 0.147
12 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 0.407 -0.025
13 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.399 0.382
14 260392_at AT1G74030 ENO1, enolase 1 0.396 0.073
15 265359_at AT2G16720 ATMYB7, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, ATY49, MYB7, myb domain protein 7 0.380 0.060
16 260556_at AT2G43620 [Chitinase family protein] 0.370 0.307
17 261129_at AT1G04820 TOR2, TORTIFOLIA 2, TUA4, tubulin alpha-4 chain 0.355 -0.004
18 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.353 0.535
19 252024_at AT3G52880 ATMDAR1, monodehydroascorbate reductase 1, MDAR1, monodehydroascorbate reductase 1 0.346 -0.010
20 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.341 0.187
21 245052_at AT2G26440 PME12, pectin methylesterase 12 0.341 0.252
22 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] 0.319 0.500
23 253277_at AT4G34230 ATCAD5, cinnamyl alcohol dehydrogenase 5, CAD-5, cinnamyl alcohol dehydrogenase 5, CAD5, cinnamyl alcohol dehydrogenase 5 0.314 0.221
24 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 0.313 0.044
25 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 0.305 -0.114
26 258962_at AT3G10570 CYP77A6, cytochrome P450, family 77, subfamily A, polypeptide 6 0.296 -0.028
27 253498_at AT4G31890 [ARM repeat superfamily protein] 0.294 0.032
28 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] 0.294 0.034
29 265740_at AT2G01150 RHA2B, RING-H2 finger protein 2B 0.289 -0.035
30 266089_at AT2G38010 [Neutral/alkaline non-lysosomal ceramidase] 0.289 0.184
31 265144_at AT1G51170 AGC2-3, AGC2 kinase 3, UCN, UNICORN 0.288 0.018
32 260561_at AT2G43580 [Chitinase family protein] 0.288 0.046
33 258033_at AT3G21250 ABCC8, ATP-binding cassette C8, ATMRP6, ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, MRP6, multidrug resistance-associated protein 6 0.288 0.047
34 248864_at AT5G46760 MYC3 0.287 -0.001
35 245041_at AT2G26530 AR781 0.287 0.174
36 249955_at AT5G18840 [Major facilitator superfamily protein] 0.283 0.105
37 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A 0.278 0.461
38 266316_at AT2G27080 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.277 0.053
39 263002_at AT1G54200 unknown 0.269 0.017
40 259018_at AT3G07390 AIR12, Auxin-Induced in Root cultures 12 0.266 0.222
41 247279_at AT5G64310 AGP1, arabinogalactan protein 1, ATAGP1 0.265 0.011
42 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor 0.264 0.142
43 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.261 0.790
44 249266_at AT5G41670 [6-phosphogluconate dehydrogenase family protein] 0.260 0.087
45 250611_at AT5G07200 ATGA20OX3, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, GA20OX3, gibberellin 20-oxidase 3, YAP169 0.256 -0.014
46 262237_at AT1G48320 DHNAT1, DHNA-CoA thioesterase 1 0.254 0.036
47 265475_at AT2G15620 ATHNIR, ARABIDOPSIS THALIANA NITRITE REDUCTASE, NIR, NITRITE REDUCTASE, NIR1, nitrite reductase 1 0.246 -0.003
48 256186_at AT1G51680 4CL.1, 4-COUMARATE:COA LIGASE 1, 4CL1, 4-coumarate:CoA ligase 1, AT4CL1, ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1 0.246 0.080
49 251109_at AT5G01600 ATFER1, ARABIDOPSIS THALIANA FERRETIN 1, FER1, ferretin 1 0.246 -0.018
50 266246_at AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 0.241 0.294
51 260267_at AT1G68530 CER6, ECERIFERUM 6, CUT1, CUTICULAR 1, G2, KCS6, 3-ketoacyl-CoA synthase 6, POP1, POLLEN-PISTIL INCOMPATIBILITY 1 0.241 -0.052
52 247717_at AT5G59320 LTP3, lipid transfer protein 3 0.240 -0.033
53 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 0.237 -0.090
54 267544_at AT2G32720 ATCB5-B, ARABIDOPSIS CYTOCHROME B5 ISOFORM B, B5 #4, CB5-B, cytochrome B5 isoform B, CYTB5-D 0.234 -0.001
55 249188_at AT5G42830 [HXXXD-type acyl-transferase family protein] 0.234 0.109
56 257635_at AT3G26280 CYP71B4, cytochrome P450, family 71, subfamily B, polypeptide 4 0.233 -0.009
57 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] 0.233 0.247
58 256433_at AT3G10985 ATWI-12, ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, SAG20, senescence associated gene 20, WI12, WOUND-INDUCED PROTEIN 12 0.232 -0.035
59 261412_at AT1G07890 APX1, ascorbate peroxidase 1, ATAPX01, ATAPX1, CS1, MEE6, maternal effect embryo arrest 6 0.231 0.025
60 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 0.230 0.149
61 252133_at AT3G50900 unknown 0.229 0.222
62 266738_at AT2G47010 unknown 0.226 -0.045
63 251183_at AT3G62630 unknown 0.225 -0.053
64 256525_at AT1G66180 [Eukaryotic aspartyl protease family protein] 0.224 -0.078
65 263838_at AT2G36880 MAT3, methionine adenosyltransferase 3 0.221 0.099
66 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.220 0.010
67 261454_at AT1G21090 [Cupredoxin superfamily protein] 0.218 -0.108
68 255471_at AT4G03050 AOP3 0.213 -0.027
69 265188_at AT1G23800 ALDH2B, aldehyde dehydrogenase 2B, ALDH2B7, aldehyde dehydrogenase 2B7 0.213 0.253
70 263979_at AT2G42840 PDF1, protodermal factor 1 0.212 -0.079
71 264988_at AT1G27140 ATGSTU14, glutathione S-transferase tau 14, GST13, GLUTATHIONE S-TRANSFERASE 13, GSTU14, glutathione S-transferase tau 14 0.210 0.183
72 257311_at AT3G26570 ORF02, PHT2;1, phosphate transporter 2;1 0.210 -0.076
73 248419_at AT5G51550 EXL3, EXORDIUM like 3 0.208 -0.107
74 252905_at AT4G39720 [VQ motif-containing protein] 0.207 -0.201
75 255666_at AT4G00390 [DNA-binding storekeeper protein-related transcriptional regulator] 0.207 0.003
76 259009_at AT3G09260 BGLU23, LEB, LONG ER BODY, PSR3.1, PYK10 -0.498 0.042
77 254403_at AT4G21323 [Subtilase family protein] -0.450 -0.059
78 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.377 -0.208
79 260812_at AT1G43650 UMAMIT22, Usually multiple acids move in and out Transporters 22 -0.368 -0.139
80 254098_at AT4G25100 ATFSD1, ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, FSD1, Fe superoxide dismutase 1 -0.327 -0.239
81 249547_at AT5G38160 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.325 -0.039
82 247928_at AT5G57320 VLN5, villin 5 -0.294 0.032
83 257522_at AT3G08990 [Yippee family putative zinc-binding protein] -0.276 0.006
84 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] -0.258 0.182
85 266438_at AT2G43180 [Phosphoenolpyruvate carboxylase family protein] -0.251 -0.047
86 260546_at AT2G43520 ATTI2, trypsin inhibitor protein 2, TI2, trypsin inhibitor protein 2 -0.247 0.124
87 252820_at AT3G42640 AHA8, H(+)-ATPase 8, HA8, H(+)-ATPase 8 -0.244 -0.103
88 248329_at AT5G52780 unknown -0.236 -0.055
89 251823_at AT3G55080 [SET domain-containing protein] -0.236 -0.078
90 246889_at AT5G25470 [AP2/B3-like transcriptional factor family protein] -0.235 -0.030
91 261420_at AT1G07720 KCS3, 3-ketoacyl-CoA synthase 3 -0.228 0.028
92 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -0.226 -0.192
93 247995_at AT5G56160 [Sec14p-like phosphatidylinositol transfer family protein] -0.225 -0.090
94 257421_at AT1G12030 unknown -0.221 -0.039
95 266300_at AT2G01420 ATPIN4, ARABIDOPSIS PIN-FORMED 4, PIN4, PIN-FORMED 4 -0.220 -0.031
96 264236_at AT1G54680 unknown -0.218 -0.105
97 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 -0.217 0.018
98 261540_at AT1G63610 unknown -0.214 -0.029
99 261812_at AT1G08270 unknown -0.208 0.044
100 252353_at AT3G48200 unknown -0.205 -0.048
101 247419_at AT5G63080 JMJ20, Jumonji domain-containing protein 20 -0.203 -0.019
102 250020_at AT5G18180 [H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein] -0.203 -0.043
103 260669_at AT1G19340 [Methyltransferase MT-A70 family protein] -0.203 0.003
104 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 -0.202 -0.043
105 260696_at AT1G32520 unknown -0.201 -0.073
106 247234_at AT5G64980 unknown -0.200 0.076
107 257830_at AT3G26690 ATNUDT13, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, ATNUDX13, nudix hydrolase homolog 13, NUDX13, nudix hydrolase homolog 13 -0.199 -0.004
108 248959_at AT5G45630 unknown -0.199 -0.014
109 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 -0.198 -0.127
110 250773_at AT5G05430 [RNA-binding protein] -0.194 -0.103
111 251193_at AT3G62910 APG3, ALBINO AND PALE GREEN, AtcpRF1, Arabidopsis thaliana chloroplast RF1, cpRF1, chloroplast ribosome release factor 1 -0.193 -0.039
112 259728_at AT1G60970 [SNARE-like superfamily protein] -0.192 -0.085
113 251469_at AT3G59530 LAP3, LESS ADHERENT POLLEN 3 -0.189 -0.031
114 252506_at AT3G46180 ATUTR5, UDP-GALACTOSE TRANSPORTER 5, UTR5, UDP-galactose transporter 5 -0.188 -0.021
115 261530_at AT1G63460 ATGPX8, GPX8, glutathione peroxidase 8 -0.187 -0.006
116 249900_at AT5G22640 emb1211, embryo defective 1211, TIC100, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 100 -0.181 -0.049
117 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] -0.180 -0.048
118 251463_at AT3G59800 unknown -0.180 -0.014
119 265033_at AT1G61520 LHCA3, photosystem I light harvesting complex gene 3 -0.176 -0.011
120 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -0.176 0.549
121 255943_at AT1G22370 AtUGT85A5, UDP-glucosyl transferase 85A5, UGT85A5, UDP-glucosyl transferase 85A5 -0.175 0.019
122 267637_at AT2G42190 unknown -0.172 -0.068
123 264774_at AT1G22890 unknown -0.171 -0.139
124 260323_at AT1G63780 IMP4 -0.170 -0.016
125 262105_at AT1G02810 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.169 -0.073
126 245702_at AT5G04220 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3, SYT3, synaptotagmin 3, SYTC -0.167 -0.103
127 261557_at AT1G63640 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] -0.165 -0.102
128 252253_at AT3G49300 [proline-rich family protein] -0.164 -0.049
129 253597_at AT4G30690 [Translation initiation factor 3 protein] -0.164 -0.067
130 259520_at AT1G12320 unknown -0.162 -0.067
131 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 -0.162 -0.230
132 260220_at AT1G74650 ATMYB31, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, ATY13, MYB31, myb domain protein 31 -0.161 -0.039
133 264971_at AT1G67210 [Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein] -0.161 0.016
134 262646_at AT1G62800 ASP4, aspartate aminotransferase 4 -0.160 0.080
135 249966_at AT5G19030 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.160 -0.011
136 251039_at AT5G02020 SIS, Salt Induced Serine rich -0.158 -0.182
137 246906_at AT5G25475 [AP2/B3-like transcriptional factor family protein] -0.157 -0.130
138 252593_at AT3G45590 ATSEN1, splicing endonuclease 1, SEN1, splicing endonuclease 1 -0.157 0.043
139 257277_at AT3G14470 [NB-ARC domain-containing disease resistance protein] -0.156 0.056
140 258880_at AT3G06420 ATG8H, autophagy 8h -0.156 0.005
141 263661_at AT1G04290 [Thioesterase superfamily protein] -0.156 0.011
142 248401_at AT5G52110 CCB2, COFACTOR ASSEMBLY OF COMPLEX C, HCF208, HIGH CHLOROPHYLL FLUORESCENCE 208 -0.155 -0.020
143 244908_at ATMG00720 ORF107D -0.155 -0.052
144 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 -0.155 0.013
145 246303_at AT3G51870 [Mitochondrial substrate carrier family protein] -0.154 -0.010
146 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.153 -0.040
147 250508_at AT5G09950 MEF7, mitochondrial editing factor 7 -0.153 -0.003
148 263016_at AT1G23410 [Ribosomal protein S27a / Ubiquitin family protein] -0.152 0.092
149 261800_at AT1G30490 ATHB9, PHV, PHAVOLUTA -0.151 -0.066