4.0:Information of module
ga1 KAR1 24h seed
In comparison with Imbibed 1 h (seed) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0080167 response to karrikin BP 2.058e-13
GO:0044710 single-organism metabolic process BP 2.001e-12
GO:0044699 single-organism process BP 6.572e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006457 protein folding BP 4.640e-09
GO:0008654 phospholipid biosynthetic process BP 2.663e-08
GO:0044255 cellular lipid metabolic process BP 1.097e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ga1 KAR1 24h seed		 Log2 signal ratio
Imbibed 1 h (seed)
1 254452_at AT4G21100 DDB1B, damaged DNA binding protein 1B 0.995 -0.022
2 250798_at AT5G05340 PRX52, peroxidase 52 0.648 0.005
3 267064_at AT2G41110 ATCAL5, CAM2, calmodulin 2 0.569 0.097
4 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 0.568 -0.015
5 251382_at AT3G60730 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.528 -0.039
6 267590_at AT2G39700 ATEXP4, ATEXPA4, expansin A4, ATHEXP ALPHA 1.6, EXPA4, expansin A4 0.500 -0.098
7 263845_at AT2G37040 ATPAL1, PAL1, PHE ammonia lyase 1 0.489 -0.058
8 249719_at AT5G35735 [Auxin-responsive family protein] 0.486 0.031
9 257802_at AT3G18770 [Autophagy-related protein 13] 0.455 0.113
10 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.451 0.044
11 261768_at AT1G15550 ATGA3OX1, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, GA3OX1, gibberellin 3-oxidase 1, GA4, GA REQUIRING 4 0.442 -0.005
12 251984_at AT3G53260 ATPAL2, PAL2, phenylalanine ammonia-lyase 2 0.426 0.022
13 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.412 0.091
14 261819_at AT1G11410 [S-locus lectin protein kinase family protein] 0.390 -0.060
15 257949_at AT3G21750 UGT71B1, UDP-glucosyl transferase 71B1 0.386 0.048
16 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 0.365 0.001
17 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 0.360 0.036
18 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.360 0.017
19 262744_at AT1G28680 [HXXXD-type acyl-transferase family protein] 0.356 -0.105
20 250611_at AT5G07200 ATGA20OX3, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, GA20OX3, gibberellin 20-oxidase 3, YAP169 0.348 -0.043
21 265501_at AT2G15490 UGT73B4, UDP-glycosyltransferase 73B4 0.348 0.133
22 263134_at AT1G78570 ATRHM1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, RHM1, rhamnose biosynthesis 1, ROL1, REPRESSOR OF LRX1 1 0.344 0.064
23 252024_at AT3G52880 ATMDAR1, monodehydroascorbate reductase 1, MDAR1, monodehydroascorbate reductase 1 0.338 -0.078
24 249188_at AT5G42830 [HXXXD-type acyl-transferase family protein] 0.336 -0.038
25 245560_at AT4G15480 UGT84A1 0.327 -0.042
26 258962_at AT3G10570 CYP77A6, cytochrome P450, family 77, subfamily A, polypeptide 6 0.327 0.004
27 250583_at AT5G07500 AtTZF6, PEI1, TZF6, Tandem CCCH Zinc Finger protein 6 0.323 -0.057
28 250257_at AT5G13770 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.323 -0.035
29 260392_at AT1G74030 ENO1, enolase 1 0.319 -0.069
30 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor 0.318 0.056
31 249266_at AT5G41670 [6-phosphogluconate dehydrogenase family protein] 0.315 -0.020
32 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] 0.315 0.038
33 261758_at AT1G08250 ADT6, arogenate dehydratase 6, AtADT6, Arabidopsis thaliana arogenate dehydratase 6 0.315 0.026
34 247693_at AT5G59730 ATEXO70H7, exocyst subunit exo70 family protein H7, EXO70H7, exocyst subunit exo70 family protein H7 0.311 0.012
35 246467_at AT5G17040 [UDP-Glycosyltransferase superfamily protein] 0.310 -0.039
36 263002_at AT1G54200 unknown 0.308 -0.033
37 248864_at AT5G46760 MYC3 0.302 -0.038
38 248868_at AT5G46780 [VQ motif-containing protein] 0.300 0.071
39 247110_at AT5G65830 ATRLP57, receptor like protein 57, RLP57, receptor like protein 57 0.300 0.029
40 251962_at AT3G53420 AtPIP2;1, PIP2, PLASMA MEMBRANE INTRINSIC PROTEIN 2, PIP2;1, PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, PIP2A, plasma membrane intrinsic protein 2A 0.293 0.003
41 253989_at AT4G26130 unknown 0.293 -0.023
42 254320_at AT4G22580 [Exostosin family protein] 0.290 -0.034
43 261023_at AT1G12200 FMO, flavin monooxygenase 0.289 -0.059
44 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 0.289 0.009
45 250125_at AT5G16390 BCCP, BIOTIN CARBOXYL CARRIER PROTEIN, BCCP-1, BIOTIN CARBOXYL-CARRIER PROTEIN 1, BCCP1, BIOTIN CARBOXYL-CARRIER PROTEIN 1, CAC1, chloroplastic acetylcoenzyme A carboxylase 1, CAC1-A, CAC1A 0.286 0.160
46 260140_at AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 0.284 0.066
47 260561_at AT2G43580 [Chitinase family protein] 0.282 0.072
48 261937_at AT1G22570 [Major facilitator superfamily protein] 0.282 -0.000
49 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.279 0.027
50 261927_at AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 0.278 0.021
51 262797_at AT1G20840 AtTMT1, TMT1, tonoplast monosaccharide transporter1 0.275 0.002
52 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 0.273 0.668
53 261454_at AT1G21090 [Cupredoxin superfamily protein] 0.270 0.012
54 251370_at AT3G60450 [Phosphoglycerate mutase family protein] 0.269 0.030
55 247085_at AT5G66310 [ATP binding microtubule motor family protein] 0.269 -0.005
56 265188_at AT1G23800 ALDH2B, aldehyde dehydrogenase 2B, ALDH2B7, aldehyde dehydrogenase 2B7 0.268 -0.055
57 253650_at AT4G30020 [PA-domain containing subtilase family protein] 0.267 0.041
58 247444_at AT5G62630 HIPL2, hipl2 protein precursor 0.267 -0.080
59 254506_at AT4G20140 GSO1, GASSHO1 0.264 0.004
60 257323_at ATMG01200 ORF294 0.264 0.035
61 247279_at AT5G64310 AGP1, arabinogalactan protein 1, ATAGP1 0.258 0.021
62 249955_at AT5G18840 [Major facilitator superfamily protein] 0.258 -0.037
63 264455_at AT1G10330 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.257 -0.012
64 259518_at AT1G20510 OPCL1, OPC-8:0 CoA ligase1 0.254 0.012
65 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] 0.254 -0.068
66 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.254 -0.030
67 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.251 0.081
68 248803_at AT5G47460 [Pentatricopeptide repeat (PPR) superfamily protein] 0.250 0.087
69 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.250 -0.026
70 263918_at AT2G36590 ATPROT3, PROLINE TRANSPORTER 3, ProT3, proline transporter 3 0.249 0.058
71 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.248 -0.027
72 264574_at AT1G05300 ZIP5, zinc transporter 5 precursor 0.248 -0.002
73 257076_at AT3G19680 unknown 0.247 0.710
74 249808_at AT5G23890 [LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope] 0.244 -0.039
75 255527_at AT4G02360 unknown 0.243 0.153
76 260276_at AT1G80450 [VQ motif-containing protein] 0.242 0.059
77 252866_at AT4G39840 unknown 0.241 0.004
78 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] 0.240 -0.040
79 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 0.236 0.129
80 247776_at AT5G58700 ATPLC4, PLC4, phosphatidylinositol-speciwc phospholipase C4 0.235 -0.097
81 265144_at AT1G51170 AGC2-3, AGC2 kinase 3, UCN, UNICORN 0.235 -0.038
82 264360_at AT1G03310 AtBE2, ATISA2, ARABIDOPSIS THALIANA ISOAMYLASE 2, BE2, BRANCHING ENZYME 2, DBE1, debranching enzyme 1, ISA2 0.233 0.038
83 256597_at AT3G28500 [60S acidic ribosomal protein family] 0.233 -0.007
84 257114_at AT3G20140 CYP705A23, cytochrome P450, family 705, subfamily A, polypeptide 23 0.232 0.018
85 257337_at ATMG00060 NAD5, NADH DEHYDROGENASE SUBUNIT 5, NAD5.3, NADH DEHYDROGENASE SUBUNIT 5.3, NAD5C, NADH dehydrogenase subunit 5C 0.230 0.099
86 259803_at AT1G72150 PATL1, PATELLIN 1 0.228 0.347
87 264867_at AT1G24150 ATFH4, FORMIN HOMOLOGUE 4, FH4, formin homologue 4 0.228 0.250
88 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 0.228 -0.029
89 259018_at AT3G07390 AIR12, Auxin-Induced in Root cultures 12 0.227 0.009
90 248139_at AT5G54970 unknown 0.226 0.097
91 265796_at AT2G35730 [Heavy metal transport/detoxification superfamily protein ] 0.226 0.011
92 251946_at AT3G53540 TRM19, TON1 Recruiting Motif 19 0.225 0.052
93 258023_at AT3G19450 ATCAD4, CAD, CAD-C, CAD4, CINNAMYL ALCOHOL DEHYDROGENASE 4 0.223 0.026
94 248841_at AT5G46740 UBP21, ubiquitin-specific protease 21 0.221 0.003
95 254924_at AT4G11330 ATMPK5, MAP kinase 5, MPK5, MAP kinase 5 0.219 -0.090
96 264704_at AT1G70090 GATL9, GALACTURONOSYLTRANSFERASE-LIKE 9, LGT8, glucosyl transferase family 8 0.219 0.340
97 253498_at AT4G31890 [ARM repeat superfamily protein] 0.219 0.019
98 264053_at AT2G22560 NET2D, Networked 2D 0.218 -0.008
99 253088_at AT4G36220 CYP84A1, CYTOCHROME P450 84A1, FAH1, ferulic acid 5-hydroxylase 1 0.217 0.036
100 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.214 -0.064
101 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.214 0.045
102 261947_at AT1G64470 [Ubiquitin-like superfamily protein] 0.211 0.018
103 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 0.210 -0.042
104 259009_at AT3G09260 BGLU23, LEB, LONG ER BODY, PSR3.1, PYK10 -0.603 -0.060
105 259032_at AT3G09380 unknown -0.507 -0.027
106 254403_at AT4G21323 [Subtilase family protein] -0.474 -0.059
107 267158_at AT2G37640 ATEXP3, EXPANSIN 3, ATEXPA3, ARABIDOPSIS THALIANA EXPANSIN A3, ATHEXP ALPHA 1.9, EXP3 -0.404 0.031
108 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.384 0.029
109 258339_at AT3G16120 [Dynein light chain type 1 family protein] -0.344 0.027
110 252109_at AT3G51540 unknown -0.321 -0.011
111 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 -0.311 -0.042
112 261535_at AT1G01725 unknown -0.303 0.086
113 261802_at AT1G30550 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.299 0.016
114 248329_at AT5G52780 unknown -0.285 0.027
115 245859_at AT5G28290 ATNEK3, NIMA-related kinase 3, NEK3, NIMA-related kinase 3 -0.281 -0.020
116 261530_at AT1G63460 ATGPX8, GPX8, glutathione peroxidase 8 -0.280 -0.005
117 250772_at AT5G05420 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] -0.280 -0.009
118 259442_at AT1G02310 MAN1, endo-beta-mannanase 1 -0.275 0.105
119 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] -0.271 0.133
120 247234_at AT5G64980 unknown -0.271 0.027
121 262377_at AT1G73110 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.269 -0.044
122 257741_at AT3G27340 unknown -0.268 0.132
123 255578_at AT4G01450 UMAMIT30, Usually multiple acids move in and out Transporters 30 -0.267 0.019
124 260546_at AT2G43520 ATTI2, trypsin inhibitor protein 2, TI2, trypsin inhibitor protein 2 -0.258 0.100
125 259889_at AT1G76405 unknown -0.257 0.029
126 266916_at AT2G45860 unknown -0.255 0.022
127 263574_at AT2G16990 [Major facilitator superfamily protein] -0.251 -0.031
128 247419_at AT5G63080 JMJ20, Jumonji domain-containing protein 20 -0.248 -0.010
129 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -0.247 0.041
130 263016_at AT1G23410 [Ribosomal protein S27a / Ubiquitin family protein] -0.242 -0.058
131 266910_at AT2G45920 [U-box domain-containing protein] -0.241 -0.060
132 249028_at AT5G44740 POLH, Y-family DNA polymerase H -0.241 -0.030
133 249886_at AT5G22320 [Leucine-rich repeat (LRR) family protein] -0.240 -0.016
134 248959_at AT5G45630 unknown -0.237 -0.071
135 246310_at AT3G51895 AST12, SULTR3;1, sulfate transporter 3;1 -0.236 -0.059
136 246039_at AT5G19480 unknown -0.234 0.036
137 259489_at AT1G15790 unknown -0.233 0.098
138 261557_at AT1G63640 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] -0.231 -0.024
139 253391_at AT4G32590 [2Fe-2S ferredoxin-like superfamily protein] -0.229 0.068
140 255554_at AT4G01897 unknown -0.228 0.097
141 254752_at AT4G13160 unknown -0.227 0.027
142 261247_at AT1G20070 unknown -0.227 0.004
143 247740_at AT5G58940 CRCK1, calmodulin-binding receptor-like cytoplasmic kinase 1 -0.224 0.028
144 247305_at AT5G63905 unknown -0.223 0.220
145 266277_at AT2G29310 [NAD(P)-binding Rossmann-fold superfamily protein] -0.223 -0.023
146 246492_at AT5G16140 [Peptidyl-tRNA hydrolase family protein] -0.223 0.089
147 251039_at AT5G02020 SIS, Salt Induced Serine rich -0.222 -0.001
148 258880_at AT3G06420 ATG8H, autophagy 8h -0.221 0.034
149 267006_at AT2G34190 [Xanthine/uracil permease family protein] -0.221 0.003
150 261540_at AT1G63610 unknown -0.221 0.013
151 262185_at AT1G77950 AGL67, AGAMOUS-like 67 -0.221 -0.027
152 255583_at AT4G01510 ARV2 -0.220 0.091
153 264236_at AT1G54680 unknown -0.219 0.029
154 261039_at AT1G17455 ELF4-L4, ELF4-like 4 -0.218 0.050
155 266489_at AT2G35190 ATNPSN11, NPSN11, novel plant snare 11, NSPN11 -0.217 -0.096
156 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] -0.216 0.088
157 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 -0.210 0.050
158 250079_at AT5G16650 [Chaperone DnaJ-domain superfamily protein] -0.202 0.021
159 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 -0.202 -0.017
160 254794_at AT4G12970 EPFL9, STOMAGEN, STOMAGEN -0.201 0.216
161 263245_at AT2G31470 DOR, DROUGHT TOLERANCE REPRESSOR -0.200 -0.012
162 252089_at AT3G52110 unknown -0.200 -0.093
163 266106_at AT2G45170 ATATG8E, AUTOPHAGY 8E, ATG8E, AUTOPHAGY 8E -0.196 -0.034
164 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] -0.194 0.032
165 261553_at AT1G63420 unknown -0.194 -0.018
166 249092_at AT5G43710 [Glycosyl hydrolase family 47 protein] -0.192 -0.008
167 252093_at AT3G51500 unknown -0.191 0.039
168 248659_at AT5G48640 [Cyclin family protein] -0.189 0.007
169 248913_at AT5G45760 [Transducin/WD40 repeat-like superfamily protein] -0.189 0.009
170 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -0.189 0.247
171 263039_at AT1G23280 [MAK16 protein-related] -0.189 0.113
172 252253_at AT3G49300 [proline-rich family protein] -0.189 0.058
173 256796_at AT3G22210 unknown -0.188 0.144
174 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A -0.188 0.015
175 250773_at AT5G05430 [RNA-binding protein] -0.186 0.000
176 256182_at AT1G51740 unknown -0.186 0.028
177 252178_at AT3G50750 BEH1, BES1/BZR1 homolog 1 -0.185 -0.061
178 261255_at AT1G05900 ATNTH2, NTH2, endonuclease III 2 -0.185 0.020
179 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 -0.184 -0.005
180 254779_at AT4G12760 unknown -0.182 0.130
181 251012_at AT5G02580 unknown -0.182 0.014
182 249433_at AT5G39940 [FAD/NAD(P)-binding oxidoreductase family protein] -0.181 -0.013
183 259235_at AT3G11600 unknown -0.180 0.080
184 260759_at AT1G49180 [protein kinase family protein] -0.180 0.021
185 251391_at AT3G60910 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.180 0.041
186 262953_at AT1G75670 [DNA-directed RNA polymerases] -0.179 0.090
187 253762_at AT4G28830 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.179 0.103
188 259817_at AT1G49880 AtErv1, EMB3106, EMBRYO DEFECTIVE 3106, Erv1, Erv1 -0.178 0.052
189 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.178 0.013
190 252548_at AT3G45850 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.178 0.030
191 259533_at AT1G12530 MOS9, modifier of snc1 9 -0.177 0.045
192 249454_at AT5G39520 unknown -0.177 -0.025
193 252603_at AT3G45050 unknown -0.177 0.041
194 266242_at AT2G27790 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.177 0.121
195 260020_at AT1G29990 PFD6, prefoldin 6 -0.177 0.112
196 258726_at AT3G11745 unknown -0.176 0.191
197 246018_at AT5G10695 unknown -0.176 0.239
198 252366_at AT3G48420 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.175 0.015
199 255535_at AT4G01790 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] -0.175 0.038
200 247041_at AT5G67180 TOE3, target of early activation tagged (EAT) 3 -0.175 0.009
201 260317_at AT1G63800 UBC5, ubiquitin-conjugating enzyme 5 -0.175 0.017
202 260220_at AT1G74650 ATMYB31, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, ATY13, MYB31, myb domain protein 31 -0.174 0.038
203 264385_at AT1G12020 unknown -0.174 0.020
204 247733_at AT5G59610 DJC73, DNA J protein C73 -0.174 0.014
205 264887_at AT1G23120 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.173 0.068