4.0:Information of module
ga1 KAR1 24h seed
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0080167 response to karrikin BP 2.058e-13
GO:0044710 single-organism metabolic process BP 2.001e-12
GO:0044699 single-organism process BP 6.572e-12
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006457 protein folding BP 4.640e-09
GO:0008654 phospholipid biosynthetic process BP 2.663e-08
GO:0044255 cellular lipid metabolic process BP 1.097e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ga1 KAR1 24h seed		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 254452_at AT4G21100 DDB1B, damaged DNA binding protein 1B 0.995 -0.149
2 250798_at AT5G05340 PRX52, peroxidase 52 0.648 0.461
3 267064_at AT2G41110 ATCAL5, CAM2, calmodulin 2 0.569 0.246
4 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 0.568 -0.842
5 251382_at AT3G60730 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.528 -1.515
6 267590_at AT2G39700 ATEXP4, ATEXPA4, expansin A4, ATHEXP ALPHA 1.6, EXPA4, expansin A4 0.500 0.335
7 263845_at AT2G37040 ATPAL1, PAL1, PHE ammonia lyase 1 0.489 0.296
8 249719_at AT5G35735 [Auxin-responsive family protein] 0.486 1.242
9 257802_at AT3G18770 [Autophagy-related protein 13] 0.455 0.111
10 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.451 -0.319
11 261768_at AT1G15550 ATGA3OX1, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, GA3OX1, gibberellin 3-oxidase 1, GA4, GA REQUIRING 4 0.442 0.462
12 251984_at AT3G53260 ATPAL2, PAL2, phenylalanine ammonia-lyase 2 0.426 0.199
13 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.412 -0.537
14 261819_at AT1G11410 [S-locus lectin protein kinase family protein] 0.390 -0.121
15 257949_at AT3G21750 UGT71B1, UDP-glucosyl transferase 71B1 0.386 -0.035
16 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 0.365 -0.793
17 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 0.360 -0.616
18 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.360 0.627
19 262744_at AT1G28680 [HXXXD-type acyl-transferase family protein] 0.356 1.140
20 250611_at AT5G07200 ATGA20OX3, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, GA20OX3, gibberellin 20-oxidase 3, YAP169 0.348 -0.582
21 265501_at AT2G15490 UGT73B4, UDP-glycosyltransferase 73B4 0.348 -0.462
22 263134_at AT1G78570 ATRHM1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, RHM1, rhamnose biosynthesis 1, ROL1, REPRESSOR OF LRX1 1 0.344 0.779
23 252024_at AT3G52880 ATMDAR1, monodehydroascorbate reductase 1, MDAR1, monodehydroascorbate reductase 1 0.338 0.365
24 249188_at AT5G42830 [HXXXD-type acyl-transferase family protein] 0.336 -0.490
25 245560_at AT4G15480 UGT84A1 0.327 -0.128
26 258962_at AT3G10570 CYP77A6, cytochrome P450, family 77, subfamily A, polypeptide 6 0.327 -0.031
27 250583_at AT5G07500 AtTZF6, PEI1, TZF6, Tandem CCCH Zinc Finger protein 6 0.323 -0.907
28 250257_at AT5G13770 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.323 0.122
29 260392_at AT1G74030 ENO1, enolase 1 0.319 0.530
30 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor 0.318 -0.061
31 249266_at AT5G41670 [6-phosphogluconate dehydrogenase family protein] 0.315 1.231
32 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] 0.315 0.288
33 261758_at AT1G08250 ADT6, arogenate dehydratase 6, AtADT6, Arabidopsis thaliana arogenate dehydratase 6 0.315 0.358
34 247693_at AT5G59730 ATEXO70H7, exocyst subunit exo70 family protein H7, EXO70H7, exocyst subunit exo70 family protein H7 0.311 -0.371
35 246467_at AT5G17040 [UDP-Glycosyltransferase superfamily protein] 0.310 0.301
36 263002_at AT1G54200 unknown 0.308 -0.881
37 248864_at AT5G46760 MYC3 0.302 -0.350
38 248868_at AT5G46780 [VQ motif-containing protein] 0.300 -0.262
39 247110_at AT5G65830 ATRLP57, receptor like protein 57, RLP57, receptor like protein 57 0.300 0.239
40 251962_at AT3G53420 AtPIP2;1, PIP2, PLASMA MEMBRANE INTRINSIC PROTEIN 2, PIP2;1, PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, PIP2A, plasma membrane intrinsic protein 2A 0.293 0.596
41 253989_at AT4G26130 unknown 0.293 0.337
42 254320_at AT4G22580 [Exostosin family protein] 0.290 -0.167
43 261023_at AT1G12200 FMO, flavin monooxygenase 0.289 -0.689
44 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 0.289 0.409
45 250125_at AT5G16390 BCCP, BIOTIN CARBOXYL CARRIER PROTEIN, BCCP-1, BIOTIN CARBOXYL-CARRIER PROTEIN 1, BCCP1, BIOTIN CARBOXYL-CARRIER PROTEIN 1, CAC1, chloroplastic acetylcoenzyme A carboxylase 1, CAC1-A, CAC1A 0.286 0.330
46 260140_at AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 0.284 -0.138
47 260561_at AT2G43580 [Chitinase family protein] 0.282 -0.468
48 261937_at AT1G22570 [Major facilitator superfamily protein] 0.282 0.070
49 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.279 0.046
50 261927_at AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 0.278 -0.050
51 262797_at AT1G20840 AtTMT1, TMT1, tonoplast monosaccharide transporter1 0.275 -0.026
52 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 0.273 0.172
53 261454_at AT1G21090 [Cupredoxin superfamily protein] 0.270 -0.288
54 251370_at AT3G60450 [Phosphoglycerate mutase family protein] 0.269 0.126
55 247085_at AT5G66310 [ATP binding microtubule motor family protein] 0.269 0.291
56 265188_at AT1G23800 ALDH2B, aldehyde dehydrogenase 2B, ALDH2B7, aldehyde dehydrogenase 2B7 0.268 0.629
57 253650_at AT4G30020 [PA-domain containing subtilase family protein] 0.267 0.109
58 247444_at AT5G62630 HIPL2, hipl2 protein precursor 0.267 0.217
59 254506_at AT4G20140 GSO1, GASSHO1 0.264 0.961
60 257323_at ATMG01200 ORF294 0.264 -0.113
61 247279_at AT5G64310 AGP1, arabinogalactan protein 1, ATAGP1 0.258 0.975
62 249955_at AT5G18840 [Major facilitator superfamily protein] 0.258 -0.506
63 264455_at AT1G10330 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.257 -0.366
64 259518_at AT1G20510 OPCL1, OPC-8:0 CoA ligase1 0.254 0.793
65 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] 0.254 -0.545
66 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.254 -0.179
67 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.251 1.427
68 248803_at AT5G47460 [Pentatricopeptide repeat (PPR) superfamily protein] 0.250 -0.658
69 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.250 1.323
70 263918_at AT2G36590 ATPROT3, PROLINE TRANSPORTER 3, ProT3, proline transporter 3 0.249 0.491
71 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.248 0.849
72 264574_at AT1G05300 ZIP5, zinc transporter 5 precursor 0.248 -0.571
73 257076_at AT3G19680 unknown 0.247 0.421
74 249808_at AT5G23890 [LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope] 0.244 -0.356
75 255527_at AT4G02360 unknown 0.243 -0.569
76 260276_at AT1G80450 [VQ motif-containing protein] 0.242 0.184
77 252866_at AT4G39840 unknown 0.241 1.345
78 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] 0.240 0.928
79 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 0.236 -0.527
80 247776_at AT5G58700 ATPLC4, PLC4, phosphatidylinositol-speciwc phospholipase C4 0.235 0.100
81 265144_at AT1G51170 AGC2-3, AGC2 kinase 3, UCN, UNICORN 0.235 0.582
82 264360_at AT1G03310 AtBE2, ATISA2, ARABIDOPSIS THALIANA ISOAMYLASE 2, BE2, BRANCHING ENZYME 2, DBE1, debranching enzyme 1, ISA2 0.233 0.978
83 256597_at AT3G28500 [60S acidic ribosomal protein family] 0.233 0.381
84 257114_at AT3G20140 CYP705A23, cytochrome P450, family 705, subfamily A, polypeptide 23 0.232 -0.923
85 257337_at ATMG00060 NAD5, NADH DEHYDROGENASE SUBUNIT 5, NAD5.3, NADH DEHYDROGENASE SUBUNIT 5.3, NAD5C, NADH dehydrogenase subunit 5C 0.230 -0.839
86 259803_at AT1G72150 PATL1, PATELLIN 1 0.228 0.692
87 264867_at AT1G24150 ATFH4, FORMIN HOMOLOGUE 4, FH4, formin homologue 4 0.228 -0.825
88 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 0.228 -0.286
89 259018_at AT3G07390 AIR12, Auxin-Induced in Root cultures 12 0.227 0.223
90 248139_at AT5G54970 unknown 0.226 0.535
91 265796_at AT2G35730 [Heavy metal transport/detoxification superfamily protein ] 0.226 -0.328
92 251946_at AT3G53540 TRM19, TON1 Recruiting Motif 19 0.225 0.193
93 258023_at AT3G19450 ATCAD4, CAD, CAD-C, CAD4, CINNAMYL ALCOHOL DEHYDROGENASE 4 0.223 1.024
94 248841_at AT5G46740 UBP21, ubiquitin-specific protease 21 0.221 0.112
95 254924_at AT4G11330 ATMPK5, MAP kinase 5, MPK5, MAP kinase 5 0.219 -0.914
96 264704_at AT1G70090 GATL9, GALACTURONOSYLTRANSFERASE-LIKE 9, LGT8, glucosyl transferase family 8 0.219 0.092
97 253498_at AT4G31890 [ARM repeat superfamily protein] 0.219 -0.456
98 264053_at AT2G22560 NET2D, Networked 2D 0.218 0.338
99 253088_at AT4G36220 CYP84A1, CYTOCHROME P450 84A1, FAH1, ferulic acid 5-hydroxylase 1 0.217 0.502
100 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.214 0.061
101 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.214 0.030
102 261947_at AT1G64470 [Ubiquitin-like superfamily protein] 0.211 -0.946
103 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 0.210 0.589
104 259009_at AT3G09260 BGLU23, LEB, LONG ER BODY, PSR3.1, PYK10 -0.603 0.519
105 259032_at AT3G09380 unknown -0.507 -1.212
106 254403_at AT4G21323 [Subtilase family protein] -0.474 -0.458
107 267158_at AT2G37640 ATEXP3, EXPANSIN 3, ATEXPA3, ARABIDOPSIS THALIANA EXPANSIN A3, ATHEXP ALPHA 1.9, EXP3 -0.404 0.620
108 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.384 -0.196
109 258339_at AT3G16120 [Dynein light chain type 1 family protein] -0.344 -1.015
110 252109_at AT3G51540 unknown -0.321 -0.122
111 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 -0.311 0.709
112 261535_at AT1G01725 unknown -0.303 -0.636
113 261802_at AT1G30550 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.299 0.330
114 248329_at AT5G52780 unknown -0.285 0.962
115 245859_at AT5G28290 ATNEK3, NIMA-related kinase 3, NEK3, NIMA-related kinase 3 -0.281 -0.157
116 261530_at AT1G63460 ATGPX8, GPX8, glutathione peroxidase 8 -0.280 0.114
117 250772_at AT5G05420 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] -0.280 0.529
118 259442_at AT1G02310 MAN1, endo-beta-mannanase 1 -0.275 -0.288
119 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] -0.271 -0.431
120 247234_at AT5G64980 unknown -0.271 -0.703
121 262377_at AT1G73110 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.269 0.472
122 257741_at AT3G27340 unknown -0.268 0.565
123 255578_at AT4G01450 UMAMIT30, Usually multiple acids move in and out Transporters 30 -0.267 1.024
124 260546_at AT2G43520 ATTI2, trypsin inhibitor protein 2, TI2, trypsin inhibitor protein 2 -0.258 0.281
125 259889_at AT1G76405 unknown -0.257 0.165
126 266916_at AT2G45860 unknown -0.255 0.701
127 263574_at AT2G16990 [Major facilitator superfamily protein] -0.251 -0.927
128 247419_at AT5G63080 JMJ20, Jumonji domain-containing protein 20 -0.248 0.086
129 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -0.247 0.835
130 263016_at AT1G23410 [Ribosomal protein S27a / Ubiquitin family protein] -0.242 0.491
131 266910_at AT2G45920 [U-box domain-containing protein] -0.241 0.006
132 249028_at AT5G44740 POLH, Y-family DNA polymerase H -0.241 0.442
133 249886_at AT5G22320 [Leucine-rich repeat (LRR) family protein] -0.240 0.987
134 248959_at AT5G45630 unknown -0.237 -0.155
135 246310_at AT3G51895 AST12, SULTR3;1, sulfate transporter 3;1 -0.236 -0.967
136 246039_at AT5G19480 unknown -0.234 0.725
137 259489_at AT1G15790 unknown -0.233 -0.882
138 261557_at AT1G63640 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] -0.231 -0.080
139 253391_at AT4G32590 [2Fe-2S ferredoxin-like superfamily protein] -0.229 0.320
140 255554_at AT4G01897 unknown -0.228 0.801
141 254752_at AT4G13160 unknown -0.227 0.210
142 261247_at AT1G20070 unknown -0.227 -0.094
143 247740_at AT5G58940 CRCK1, calmodulin-binding receptor-like cytoplasmic kinase 1 -0.224 -1.279
144 247305_at AT5G63905 unknown -0.223 -0.812
145 266277_at AT2G29310 [NAD(P)-binding Rossmann-fold superfamily protein] -0.223 0.464
146 246492_at AT5G16140 [Peptidyl-tRNA hydrolase family protein] -0.223 0.995
147 251039_at AT5G02020 SIS, Salt Induced Serine rich -0.222 -0.426
148 258880_at AT3G06420 ATG8H, autophagy 8h -0.221 0.201
149 267006_at AT2G34190 [Xanthine/uracil permease family protein] -0.221 0.299
150 261540_at AT1G63610 unknown -0.221 0.462
151 262185_at AT1G77950 AGL67, AGAMOUS-like 67 -0.221 -0.291
152 255583_at AT4G01510 ARV2 -0.220 0.573
153 264236_at AT1G54680 unknown -0.219 -0.045
154 261039_at AT1G17455 ELF4-L4, ELF4-like 4 -0.218 0.283
155 266489_at AT2G35190 ATNPSN11, NPSN11, novel plant snare 11, NSPN11 -0.217 1.155
156 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] -0.216 0.924
157 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 -0.210 0.388
158 250079_at AT5G16650 [Chaperone DnaJ-domain superfamily protein] -0.202 0.896
159 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 -0.202 0.111
160 254794_at AT4G12970 EPFL9, STOMAGEN, STOMAGEN -0.201 1.287
161 263245_at AT2G31470 DOR, DROUGHT TOLERANCE REPRESSOR -0.200 -0.762
162 252089_at AT3G52110 unknown -0.200 0.164
163 266106_at AT2G45170 ATATG8E, AUTOPHAGY 8E, ATG8E, AUTOPHAGY 8E -0.196 0.362
164 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] -0.194 -0.165
165 261553_at AT1G63420 unknown -0.194 0.659
166 249092_at AT5G43710 [Glycosyl hydrolase family 47 protein] -0.192 0.596
167 252093_at AT3G51500 unknown -0.191 -0.361
168 248659_at AT5G48640 [Cyclin family protein] -0.189 -0.051
169 248913_at AT5G45760 [Transducin/WD40 repeat-like superfamily protein] -0.189 -0.082
170 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -0.189 0.259
171 263039_at AT1G23280 [MAK16 protein-related] -0.189 0.266
172 252253_at AT3G49300 [proline-rich family protein] -0.189 -0.311
173 256796_at AT3G22210 unknown -0.188 0.819
174 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A -0.188 -0.271
175 250773_at AT5G05430 [RNA-binding protein] -0.186 0.301
176 256182_at AT1G51740 unknown -0.186 -0.016
177 252178_at AT3G50750 BEH1, BES1/BZR1 homolog 1 -0.185 0.291
178 261255_at AT1G05900 ATNTH2, NTH2, endonuclease III 2 -0.185 0.217
179 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 -0.184 -0.487
180 254779_at AT4G12760 unknown -0.182 1.121
181 251012_at AT5G02580 unknown -0.182 1.082
182 249433_at AT5G39940 [FAD/NAD(P)-binding oxidoreductase family protein] -0.181 -0.047
183 259235_at AT3G11600 unknown -0.180 0.023
184 260759_at AT1G49180 [protein kinase family protein] -0.180 -0.676
185 251391_at AT3G60910 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.180 1.002
186 262953_at AT1G75670 [DNA-directed RNA polymerases] -0.179 -0.006
187 253762_at AT4G28830 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.179 0.767
188 259817_at AT1G49880 AtErv1, EMB3106, EMBRYO DEFECTIVE 3106, Erv1, Erv1 -0.178 0.435
189 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.178 -0.392
190 252548_at AT3G45850 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.178 0.835
191 259533_at AT1G12530 MOS9, modifier of snc1 9 -0.177 -0.261
192 249454_at AT5G39520 unknown -0.177 -0.614
193 252603_at AT3G45050 unknown -0.177 0.395
194 266242_at AT2G27790 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.177 0.096
195 260020_at AT1G29990 PFD6, prefoldin 6 -0.177 1.167
196 258726_at AT3G11745 unknown -0.176 -0.187
197 246018_at AT5G10695 unknown -0.176 -0.417
198 252366_at AT3G48420 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.175 0.108
199 255535_at AT4G01790 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] -0.175 -0.416
200 247041_at AT5G67180 TOE3, target of early activation tagged (EAT) 3 -0.175 -1.202
201 260317_at AT1G63800 UBC5, ubiquitin-conjugating enzyme 5 -0.175 0.170
202 260220_at AT1G74650 ATMYB31, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, ATY13, MYB31, myb domain protein 31 -0.174 -0.052
203 264385_at AT1G12020 unknown -0.174 0.944
204 247733_at AT5G59610 DJC73, DNA J protein C73 -0.174 0.411
205 264887_at AT1G23120 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.173 -0.763