4.0:Information of module
VND6 0h
In comparison with Dark 3day ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006412 translation BP 2.287e-19
GO:0032259 methylation BP 3.969e-19
GO:0043414 macromolecule methylation BP 4.223e-19
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009056 catabolic process BP 4.277e-09
GO:0044712 single-organism catabolic process BP 1.839e-08
GO:1901575 organic substance catabolic process BP 2.528e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
VND6 0h		 Log2 signal ratio
Dark 3day ivd
1 260522_x_at AT2G41730 unknown 0.868 0.313
2 251566_at AT3G58210 [TRAF-like family protein] 0.794 -0.071
3 251366_at AT3G61340 [F-box and associated interaction domains-containing protein] 0.753 1.395
4 245688_at AT1G28290 AGP31, arabinogalactan protein 31 0.674 -6.069
5 264431_at AT1G61700 [RNA polymerases N / 8 kDa subunit] 0.610 -0.071
6 248240_at AT5G53950 ANAC098, Arabidopsis NAC domain containing protein 98, ATCUC2, CUP-SHAPED COTYLEDON 2, CUC2, CUP-SHAPED COTYLEDON 2 0.601 -0.603
7 266972_at AT2G39590 [Ribosomal protein S8 family protein] 0.585 -0.071
8 263498_at AT2G42610 LSH10, LIGHT SENSITIVE HYPOCOTYLS 10 0.537 -2.307
9 254699_at AT4G17990 unknown 0.532 -0.071
10 267167_at AT2G37740 ATZFP10, ZINC-FINGER PROTEIN 10, ZFP10, zinc-finger protein 10 0.519 -0.071
11 265918_at AT2G15090 KCS8, 3-ketoacyl-CoA synthase 8 0.504 -0.764
12 264066_at AT2G27880 AGO5, ARGONAUTE 5, AtAGO5 0.501 -0.071
13 253650_at AT4G30020 [PA-domain containing subtilase family protein] 0.494 -5.907
14 261421_at AT1G18840 IQD30, IQ-domain 30 0.453 -3.792
15 254789_at AT4G12880 AtENODL19, ENODL19, early nodulin-like protein 19 0.442 -6.282
16 247425_at AT5G62550 unknown 0.420 -5.599
17 253270_at AT4G34160 CYCD3, CYCD3;1, CYCLIN D3;1 0.419 -1.338
18 254175_at AT4G24050 [NAD(P)-binding Rossmann-fold superfamily protein] 0.414 1.819
19 261869_at AT1G11470 [Pentatricopeptide repeat (PPR) superfamily protein] 0.411 -0.071
20 260348_at AT1G69350 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.401 -0.099
21 249060_at AT5G44560 VPS2.2 0.398 -4.456
22 254235_at AT4G23750 CRF2, cytokinin response factor 2, TMO3, TARGET OF MONOPTEROS 3 0.394 -0.371
23 252357_at AT3G48410 [alpha/beta-Hydrolases superfamily protein] 0.391 1.771
24 248476_at AT5G50890 [alpha/beta-Hydrolases superfamily protein] 0.388 -6.560
25 264574_at AT1G05300 ZIP5, zinc transporter 5 precursor 0.388 0.726
26 248456_at AT5G51380 [RNI-like superfamily protein] 0.380 0.959
27 266687_at AT2G19670 ATPRMT1A, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, PRMT1A, protein arginine methyltransferase 1A 0.379 -4.176
28 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 0.378 -4.578
29 247753_at AT5G59070 [UDP-Glycosyltransferase superfamily protein] 0.377 -3.447
30 264868_at AT1G24095 [Putative thiol-disulphide oxidoreductase DCC] 0.375 0.249
31 263016_at AT1G23410 [Ribosomal protein S27a / Ubiquitin family protein] 0.374 -3.049
32 259746_at AT1G71060 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.367 -0.797
33 265329_at AT2G18450 SDH1-2, succinate dehydrogenase 1-2 0.367 -0.606
34 258369_at AT3G14310 ATPME3, pectin methylesterase 3, OZS2, OVERLY ZINC SENSITIVE 2, PME3, pectin methylesterase 3 0.365 -2.399
35 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 0.361 -4.260
36 261023_at AT1G12200 FMO, flavin monooxygenase 0.361 0.561
37 247962_at AT5G56580 ANQ1, ARABIDOPSIS NQK1, ATMKK6, ARABIDOPSIS THALIANA MAP KINASE KINASE 6, MKK6, MAP kinase kinase 6 0.360 -2.179
38 262350_at AT2G48150 ATGPX4, glutathione peroxidase 4, GPX4, glutathione peroxidase 4 0.360 0.766
39 251239_at AT3G62440 SAF1, secondary wall thickening-associated F-box 1 0.360 -0.071
40 256750_at AT3G27150 [Galactose oxidase/kelch repeat superfamily protein] 0.358 -0.995
41 245612_at AT4G14440 ATECI3, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, ECI3, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, HCD1, 3-hydroxyacyl-CoA dehydratase 1 0.357 -3.967
42 248752_at AT5G47600 [HSP20-like chaperones superfamily protein] 0.356 -0.071
43 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.356 -2.268
44 259788_at AT1G29670 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.355 0.337
45 262882_at AT1G64900 CYP89, CYP89A2, cytochrome P450, family 89, subfamily A, polypeptide 2 0.353 -1.550
46 248740_at AT5G48130 [Phototropic-responsive NPH3 family protein] 0.348 -0.071
47 248354_at AT5G52330 [TRAF-like superfamily protein] 0.348 -0.071
48 263360_at AT2G03830 GLV6, GOLVEN 6, RGF8, root meristem growth factor 8 0.347 2.922
49 264741_at AT1G62290 [Saposin-like aspartyl protease family protein] 0.347 -1.184
50 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 0.346 1.804
51 247268_at AT5G64080 AtXYP1, XYP1, xylogen protein 1 0.345 -1.211
52 259660_at AT1G55260 LTPG6, glycosylphosphatidylinositol-anchored lipid protein transfer 6 0.345 -3.698
53 253372_at AT4G33220 ATPME44, A. THALIANA PECTIN METHYLESTERASE 44, PME44, pectin methylesterase 44 0.343 -2.762
54 259430_at AT1G01610 ATGPAT4, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 4, GPAT4, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 4 0.343 -1.304
55 263737_at AT1G60010 unknown 0.336 -0.698
56 266428_at AT2G07180 [Protein kinase superfamily protein] 0.335 -0.579
57 253168_at AT4G35070 [SBP (S-ribonuclease binding protein) family protein] 0.335 -1.923
58 247563_at AT5G61130 AtPDCB1, PDCB1, plasmodesmata callose-binding protein 1 0.333 -5.540
59 262001_at AT1G33790 [jacalin lectin family protein] 0.332 -2.787
60 259723_at AT1G60960 ATIRT3, IRON REGULATED TRANSPORTER 3, IRT3, iron regulated transporter 3 0.332 -0.001
61 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 0.330 0.121
62 257761_at AT3G23090 WDL3 0.329 -2.429
63 260230_at AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 0.324 -0.071
64 264966_at AT1G60570 [Galactose oxidase/kelch repeat superfamily protein] 0.323 -0.071
65 248314_at AT5G52620 [F-box associated ubiquitination effector family protein] 0.320 -0.071
66 251065_at AT5G01870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.317 -0.071
67 249426_at AT5G39840 [ATP-dependent RNA helicase, mitochondrial, putative] 0.312 0.955
68 252866_at AT4G39840 unknown 0.308 -2.887
69 266087_at AT2G37790 AKR4C10, Aldo-keto reductase family 4 member C10 0.305 -2.477
70 251440_at AT3G60010 ASK13, SKP1-like 13, SK13, SKP1-like 13 0.303 1.395
71 245680_at AT1G56570 PGN, PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl 0.302 -0.645
72 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] 0.302 -2.886
73 260565_at AT2G43800 [Actin-binding FH2 (formin homology 2) family protein] 0.301 -1.683
74 255900_at AT1G17830 unknown 0.301 2.084
75 266421_at AT2G38540 ATLTP1, ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, LP1, lipid transfer protein 1, LTP1, LIPID TRANSFER PROTEIN 1 0.299 -2.805
76 257600_at AT3G24770 CLE41, CLAVATA3/ESR-RELATED 41 0.299 -2.181
77 246934_at AT5G25290 unknown 0.299 1.146
78 247362_at AT5G63140 ATPAP29, purple acid phosphatase 29, PAP29, PAP29, purple acid phosphatase 29 0.296 -4.839
79 247340_at AT5G63700 [zinc ion binding] 0.296 -2.743
80 257487_at AT1G71850 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.294 -0.290
81 262575_at AT1G15210 ABCG35, ATP-binding cassette G35, ATPDR7, PLEIOTROPIC DRUG RESISTANCE 7, PDR7, pleiotropic drug resistance 7 0.293 -0.071
82 253252_at AT4G34740 ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATPURF2, CIA1, CHLOROPLAST IMPORT APPARATUS 1, DOV1, DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS 0.291 -2.998
83 253014_at AT4G37940 AGL21, AGAMOUS-like 21 0.286 0.842
84 264986_at AT1G27130 ATGSTU13, glutathione S-transferase tau 13, GST12, GLUTATHIONE S-TRANSFERASE 12, GSTU13, glutathione S-transferase tau 13 0.285 -1.049
85 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 0.280 2.258
86 246052_at AT5G08305 [Pentatricopeptide repeat (PPR) superfamily protein] 0.278 -0.029
87 265964_at AT2G37510 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.278 -2.095
88 253607_at AT4G30330 [Small nuclear ribonucleoprotein family protein] 0.277 -2.758
89 247347_at AT5G63780 SHA1, shoot apical meristem arrest 1 0.274 -2.722
90 251035_at AT5G02220 SMR4, SIAMESE-RELATED 4 0.274 0.068
91 267011_at AT2G39230 LOJ, LATERAL ORGAN JUNCTION 0.272 -1.346
92 253218_at AT4G34980 SLP2, subtilisin-like serine protease 2 0.271 -0.576
93 245348_at AT4G17770 ATTPS5, trehalose phosphatase/synthase 5, TPS5, TREHALOSE -6-PHOSPHATASE SYNTHASE S5, TPS5, trehalose phosphatase/synthase 5 0.264 -2.086
94 247582_at AT5G60760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.263 2.960
95 252033_at AT3G51950 [Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein] 0.262 -1.685
96 245310_at AT4G13950 RALFL31, ralf-like 31 0.261 -2.660
97 262465_at AT1G50270 [Pentatricopeptide repeat (PPR) superfamily protein] 0.258 -1.041
98 248685_at AT5G48500 unknown 0.257 -2.183
99 246241_at AT4G37050 AtPLAIVC, phospholipase A IVC, PLA V, PLAIII{beta}, patatin-related phospholipase III beta, PLP4, PATATIN-like protein 4 -0.876 -0.081
100 247324_at AT5G64190 unknown -0.804 4.114
101 261243_at AT1G20180 unknown -0.755 9.239
102 252488_at AT3G46700 [UDP-Glycosyltransferase superfamily protein] -0.729 4.987
103 262454_at AT1G11190 BFN1, bifunctional nuclease i, ENDO1, ENDONUCLEASE 1 -0.697 0.138
104 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 -0.677 -0.071
105 257540_at AT3G21520 AtDMP1, Arabidopsis thaliana DUF679 domain membrane protein 1, DMP1, DUF679 domain membrane protein 1 -0.663 5.504
106 260438_at AT1G68290 ENDO2, endonuclease 2 -0.655 1.155
107 260969_at AT1G12240 ATBETAFRUCT4, AtFRUCT4, AtVI2, FRUCT4, fructosidase 4, VAC-INV, VACUOLAR INVERTASE, VI2, vacuolar invertase 2 -0.633 3.617
108 256103_at AT1G13540 unknown -0.600 -0.184
109 255315_at AT4G04165 [pseudogene] -0.597 -0.071
110 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 -0.596 -2.017
111 248545_at AT5G50260 CEP1, cysteine endopeptidase 1 -0.580 0.199
112 245044_at AT2G26500 [cytochrome b6f complex subunit (petM), putative] -0.576 -0.942
113 246608_at AT5G35380 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.571 1.607
114 262356_at AT1G73000 PYL3, PYR1-like 3, RCAR13, regulatory components of ABA receptor 13 -0.570 4.187
115 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 -0.567 1.821
116 261779_at AT1G76230 unknown -0.561 4.250
117 258293_at AT3G23430 ATPHO1, ARABIDOPSIS PHOSPHATE 1, PHO1, phosphate 1 -0.536 0.381
118 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.503 -0.456
119 250616_at AT5G07280 EMS1, EXCESS MICROSPOROCYTES1, EXS, EXTRA SPOROGENOUS CELLS -0.499 1.873
120 249376_at AT5G40645 [RPM1-interacting protein 4 (RIN4) family protein] -0.496 3.387
121 246335_at AT3G44880 ACD1, ACCELERATED CELL DEATH 1, LLS1, LETHAL LEAF-SPOT 1 HOMOLOG, PAO, PHEOPHORBIDE A OXYGENASE -0.496 1.760
122 252699_at AT3G43680 unknown -0.494 -0.071
123 264777_at AT1G08630 THA1, threonine aldolase 1 -0.492 12.172
124 259133_at AT3G05400 [Major facilitator superfamily protein] -0.492 1.970
125 245440_at AT4G16680 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.490 4.723
126 245987_at AT5G13180 ANAC083, NAC domain containing protein 83, NAC083, NAC domain containing protein 83, VNI2, VND-interacting 2 -0.490 1.658
127 250157_at AT5G15180 [Peroxidase superfamily protein] -0.486 -1.338
128 262916_at AT1G59700 ATGSTU16, glutathione S-transferase TAU 16, GSTU16, glutathione S-transferase TAU 16 -0.486 0.594
129 252098_at AT3G51330 [Eukaryotic aspartyl protease family protein] -0.484 0.296
130 260806_at AT1G78260 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.478 -0.454
131 249033_at AT5G44920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.477 -0.042
132 260048_at AT1G73750 [Uncharacterised conserved protein UCP031088, alpha/beta hydrolase] -0.476 1.561
133 254648_at AT4G18550 AtDSEL, Arabidopsis thaliana DAD1-like seeding establishment-related lipase, DSEL, DAD1-like seeding establishment-related lipase -0.466 -0.516
134 262047_at AT1G80160 GLYI7, glyoxylase I 7 -0.466 8.689
135 257832_at AT3G26740 CCL, CCR-like -0.462 4.965
136 262244_at AT1G48260 CIPK17, CBL-interacting protein kinase 17, SnRK3.21, SNF1-RELATED PROTEIN KINASE 3.21 -0.455 2.763
137 256574_at AT3G14780 unknown -0.449 0.772
138 249454_at AT5G39520 unknown -0.447 8.685
139 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.438 0.700
140 256244_at AT3G12520 SULTR4;2, sulfate transporter 4;2 -0.438 -1.917
141 265945_at AT2G19500 ATCKX2, CKX2, cytokinin oxidase 2 -0.434 7.114
142 248207_at AT5G53970 TAT7, tyrosine aminotransferase 7 -0.428 3.839
143 246197_at AT4G37010 CEN2, centrin 2 -0.424 3.682
144 261180_at AT1G34590 unknown -0.418 -0.071
145 255881_at AT1G67070 DIN9, DARK INDUCIBLE 9, PMI2, PHOSPHOMANNOSE ISOMERASE 2 -0.414 6.160
146 248618_at AT5G49620 AtMYB78, myb domain protein 78, MYB78, myb domain protein 78 -0.402 4.565
147 260943_at AT1G45145 ATH5, THIOREDOXIN H-TYPE 5, ATTRX5, thioredoxin H-type 5, LIV1, LOCUS OF INSENSITIVITY TO VICTORIN 1, TRX-h5, THIOREDOXIN H-TYPE 5, TRX5, thioredoxin H-type 5 -0.402 4.701
148 245423_at AT4G17483 [alpha/beta-Hydrolases superfamily protein] -0.401 2.675
149 245804_at AT1G46696 unknown -0.399 0.457
150 246998_at AT5G67370 CGLD27, CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 -0.396 -2.279
151 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 -0.390 0.842
152 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 -0.388 5.166
153 255577_at AT4G01410 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.384 2.944
154 264532_at AT1G55740 AtSIP1, seed imbibition 1, RS1, raffinose synthase 1, SIP1, seed imbibition 1 -0.380 2.495
155 252882_at AT4G39675 unknown -0.376 7.959
156 249402_at AT5G40155 [Defensin-like (DEFL) family protein] -0.352 -0.071
157 251952_at AT3G53650 [Histone superfamily protein] -0.351 3.200
158 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 -0.347 1.636
159 262630_at AT1G06520 ATGPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, sn-2-GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1 -0.344 4.282
160 258085_at AT3G26100 [Regulator of chromosome condensation (RCC1) family protein] -0.337 2.545
161 262425_at AT1G47660 unknown -0.336 -0.071
162 245692_at AT5G04150 BHLH101 -0.336 -0.320
163 261558_at AT1G01770 unknown -0.335 3.402
164 260582_at AT2G47200 unknown -0.334 4.638
165 259618_at AT1G48000 AtMYB112, myb domain protein 112, MYB112, myb domain protein 112 -0.331 3.424
166 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -0.331 -2.053
167 261609_at AT1G49740 [PLC-like phosphodiesterases superfamily protein] -0.331 -0.740
168 260968_at AT1G12250 [Pentapeptide repeat-containing protein] -0.327 -1.423
169 256883_at AT3G26440 unknown -0.324 2.472
170 252447_at AT3G47040 [Glycosyl hydrolase family protein] -0.318 5.920
171 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.316 4.420
172 258923_at AT3G10450 SCPL7, serine carboxypeptidase-like 7 -0.316 5.425
173 246781_at AT5G27350 SFP1 -0.315 1.951
174 251646_at AT3G57780 unknown -0.315 -1.119
175 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.314 -6.980
176 263411_at AT2G28710 [C2H2-type zinc finger family protein] -0.314 3.427
177 251914_at AT3G53930 [Protein kinase superfamily protein] -0.312 1.779
178 254629_at AT4G18425 unknown -0.311 -0.785
179 254573_at AT4G19420 [Pectinacetylesterase family protein] -0.309 1.843
180 251555_at AT3G58780 AGL1, AGAMOUS-like 1, SHP1, SHATTERPROOF 1 -0.309 0.216
181 258983_at AT3G08860 PYD4, PYRIMIDINE 4 -0.301 3.390
182 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 -0.299 0.156
183 266340_at AT2G01480 [O-fucosyltransferase family protein] -0.296 0.876
184 263668_at AT1G04350 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.295 -1.465
185 256455_at AT1G75190 unknown -0.294 0.172
186 262827_at AT1G13100 CYP71B29, cytochrome P450, family 71, subfamily B, polypeptide 29 -0.294 -1.771
187 264280_at AT1G61820 BGLU46, beta glucosidase 46 -0.292 11.480
188 260272_at AT1G80570 [RNI-like superfamily protein] -0.290 3.093
189 245577_at AT4G14780 [Protein kinase superfamily protein] -0.289 3.983
190 266604_at AT2G46030 UBC6, ubiquitin-conjugating enzyme 6 -0.286 0.062
191 246303_at AT3G51870 [Mitochondrial substrate carrier family protein] -0.285 1.411
192 246761_at AT5G27980 [Seed maturation protein] -0.284 -0.074
193 259887_at AT1G76360 [Protein kinase superfamily protein] -0.284 0.532
194 245148_at AT2G45220 PME17, pectin methylesterase 17 -0.282 7.248
195 257800_at AT3G15900 unknown -0.278 0.159