4.0:Information of module
SND1 0h
In comparison with red illumination +lincomycin help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006260 DNA replication BP 5.497e-22
GO:0006259 DNA metabolic process BP 1.536e-17
GO:0006261 DNA-dependent DNA replication BP 1.699e-16
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015996 chlorophyll catabolic process BP 6.757e-05
GO:0046149 pigment catabolic process BP 6.757e-05
GO:0080134 regulation of response to stress BP 1.021e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
SND1 0h		 Log2 signal ratio
red illumination +lincomycin
1 260522_x_at AT2G41730 unknown 0.943 0.102
2 245973_at AT5G32490 [pseudogene] 0.824 -0.023
3 251566_at AT3G58210 [TRAF-like family protein] 0.809 0.050
4 248354_at AT5G52330 [TRAF-like superfamily protein] 0.714 -0.048
5 256459_at AT1G36180 ACC2, acetyl-CoA carboxylase 2 0.702 0.111
6 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.670 0.066
7 251366_at AT3G61340 [F-box and associated interaction domains-containing protein] 0.616 -0.078
8 248240_at AT5G53950 ANAC098, Arabidopsis NAC domain containing protein 98, ATCUC2, CUP-SHAPED COTYLEDON 2, CUC2, CUP-SHAPED COTYLEDON 2 0.541 -0.155
9 245688_at AT1G28290 AGP31, arabinogalactan protein 31 0.520 0.022
10 251871_at AT3G54520 unknown 0.499 0.035
11 247425_at AT5G62550 unknown 0.482 0.057
12 254699_at AT4G17990 unknown 0.476 -0.027
13 259409_at AT1G13330 AHP2, Arabidopsis Hop2 homolog 0.462 0.006
14 267167_at AT2G37740 ATZFP10, ZINC-FINGER PROTEIN 10, ZFP10, zinc-finger protein 10 0.452 0.065
15 257386_at AT2G42440 ASL15, ASYMMETRIC LEAVES 2-like 15, LBD17, LOB domain-containing protein 17 0.450 -0.007
16 253650_at AT4G30020 [PA-domain containing subtilase family protein] 0.436 -0.104
17 252215_at AT3G50240 KICP-02 0.433 0.034
18 264892_at AT1G23160 [Auxin-responsive GH3 family protein] 0.432 -0.056
19 257761_at AT3G23090 WDL3 0.420 0.107
20 248241_at AT5G53960 [ATP binding] 0.416 -0.073
21 261869_at AT1G11470 [Pentatricopeptide repeat (PPR) superfamily protein] 0.384 -0.054
22 265329_at AT2G18450 SDH1-2, succinate dehydrogenase 1-2 0.383 0.077
23 259087_at AT3G04980 [DNAJ heat shock N-terminal domain-containing protein] 0.376 -0.079
24 264720_at AT1G70080 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.375 -0.104
25 248456_at AT5G51380 [RNI-like superfamily protein] 0.374 0.051
26 247962_at AT5G56580 ANQ1, ARABIDOPSIS NQK1, ATMKK6, ARABIDOPSIS THALIANA MAP KINASE KINASE 6, MKK6, MAP kinase kinase 6 0.369 -0.037
27 246016_at AT5G10720 AHK5, histidine kinase 5, CKI2, CYTOKININ INDEPENDENT 2, HK5, histidine kinase 5 0.363 0.052
28 261421_at AT1G18840 IQD30, IQ-domain 30 0.362 -0.071
29 249060_at AT5G44560 VPS2.2 0.359 -0.003
30 266687_at AT2G19670 ATPRMT1A, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, PRMT1A, protein arginine methyltransferase 1A 0.348 0.083
31 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] 0.347 -0.033
32 264741_at AT1G62290 [Saposin-like aspartyl protease family protein] 0.346 -0.109
33 248658_at AT5G48600 ATCAP-C, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, ATSMC3, structural maintenance of chromosome 3, ATSMC4, ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, SMC3, structural maintenance of chromosome 3 0.344 0.067
34 247340_at AT5G63700 [zinc ion binding] 0.341 0.116
35 252430_at AT3G47470 CAB4, LHCA4, light-harvesting chlorophyll-protein complex I subunit A4 0.329 -0.238
36 247299_at AT5G63900 [Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain] 0.329 -0.022
37 259709_at AT1G77655 unknown 0.329 -0.116
38 253014_at AT4G37940 AGL21, AGAMOUS-like 21 0.326 0.031
39 255513_at AT4G02060 MCM7, PRL, PROLIFERA 0.325 0.121
40 251761_at AT3G55700 [UDP-Glycosyltransferase superfamily protein] 0.322 0.053
41 249118_at AT5G43870 [FUNCTIONS IN: phosphoinositide binding] 0.311 0.032
42 254341_at AT4G22130 SRF8, STRUBBELIG-receptor family 8 0.303 0.013
43 263535_at AT2G24970 unknown 0.301 -0.042
44 262882_at AT1G64900 CYP89, CYP89A2, cytochrome P450, family 89, subfamily A, polypeptide 2 0.300 0.192
45 267529_at AT2G45490 AtAUR3, ataurora3, AUR3, ataurora3 0.300 -0.040
46 259815_at AT1G49870 unknown 0.299 -0.005
47 247028_at AT5G67100 ICU2, INCURVATA2 0.299 -0.010
48 248054_at AT5G55820 WYR, WYRD 0.298 -0.061
49 253791_at AT4G28640 IAA11, indole-3-acetic acid inducible 11 0.289 0.067
50 266087_at AT2G37790 AKR4C10, Aldo-keto reductase family 4 member C10 0.286 0.050
51 246585_at AT5G14750 ATMYB66, myb domain protein 66, MYB66, myb domain protein 66, WER, WEREWOLF, WER1, WEREWOLF 1 0.282 0.174
52 250328_at AT5G11780 unknown 0.281 -0.078
53 263360_at AT2G03830 GLV6, GOLVEN 6, RGF8, root meristem growth factor 8 0.279 -0.083
54 253168_at AT4G35070 [SBP (S-ribonuclease binding protein) family protein] 0.278 0.026
55 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.276 -0.072
56 258341_at AT3G22790 NET1A, Networked 1A 0.275 -0.139
57 248476_at AT5G50890 [alpha/beta-Hydrolases superfamily protein] 0.275 0.013
58 251373_at AT3G60530 GATA4, GATA transcription factor 4 0.272 -0.055
59 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 0.272 -0.020
60 251239_at AT3G62440 SAF1, secondary wall thickening-associated F-box 1 0.271 -0.060
61 264966_at AT1G60570 [Galactose oxidase/kelch repeat superfamily protein] 0.271 -0.052
62 259746_at AT1G71060 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.270 0.131
63 247348_at AT5G63810 AtBGAL10, Arabidopsis thaliana beta-galactosidase 10, BGAL10, beta-galactosidase 10 0.267 0.046
64 261000_at AT1G26540 [Agenet domain-containing protein] 0.265 -0.007
65 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.264 0.018
66 264868_at AT1G24095 [Putative thiol-disulphide oxidoreductase DCC] 0.261 -0.000
67 260329_at AT1G80370 CYCA2;4, Cyclin A2;4 0.259 -0.169
68 252357_at AT3G48410 [alpha/beta-Hydrolases superfamily protein] 0.257 -0.103
69 249426_at AT5G39840 [ATP-dependent RNA helicase, mitochondrial, putative] 0.256 0.031
70 256746_at AT3G29320 PHS1, alpha-glucan phosphorylase 1 0.254 -0.048
71 252548_at AT3G45850 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.251 -0.042
72 254821_at AT4G12540 unknown 0.251 -0.094
73 264545_at AT1G55670 PSAG, photosystem I subunit G 0.251 -0.284
74 251898_at AT3G54340 AP3, APETALA 3, ATAP3 0.251 -0.047
75 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 0.250 0.023
76 245348_at AT4G17770 ATTPS5, trehalose phosphatase/synthase 5, TPS5, TREHALOSE -6-PHOSPHATASE SYNTHASE S5, TPS5, trehalose phosphatase/synthase 5 0.248 0.000
77 248082_at AT5G55400 [Actin binding Calponin homology (CH) domain-containing protein] 0.246 -0.029
78 263402_at AT2G04050 [MATE efflux family protein] 0.245 0.546
79 249276_at AT5G41880 POLA3, POLA4 0.242 0.071
80 257930_at AT3G17010 REM22, REPRODUCTIVE MERISTEM 22 0.240 -0.129
81 260565_at AT2G43800 [Actin-binding FH2 (formin homology 2) family protein] 0.239 -0.076
82 247324_at AT5G64190 unknown -0.653 -0.188
83 246241_at AT4G37050 AtPLAIVC, phospholipase A IVC, PLA V, PLAIII{beta}, patatin-related phospholipase III beta, PLP4, PATATIN-like protein 4 -0.622 -0.149
84 262356_at AT1G73000 PYL3, PYR1-like 3, RCAR13, regulatory components of ABA receptor 13 -0.529 -0.023
85 258293_at AT3G23430 ATPHO1, ARABIDOPSIS PHOSPHATE 1, PHO1, phosphate 1 -0.505 -0.049
86 260048_at AT1G73750 [Uncharacterised conserved protein UCP031088, alpha/beta hydrolase] -0.494 -0.150
87 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 -0.476 0.022
88 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 -0.471 0.005
89 259133_at AT3G05400 [Major facilitator superfamily protein] -0.455 -0.065
90 245044_at AT2G26500 [cytochrome b6f complex subunit (petM), putative] -0.451 -0.074
91 260806_at AT1G78260 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.430 -0.061
92 260438_at AT1G68290 ENDO2, endonuclease 2 -0.430 -0.089
93 258445_at AT3G22400 ATLOX5, Arabidopsis thaliana lipoxygenase 5, LOX5 -0.416 0.072
94 264477_at AT1G77240 AAE2, acyl activating enzyme 2 -0.414 0.009
95 262244_at AT1G48260 CIPK17, CBL-interacting protein kinase 17, SnRK3.21, SNF1-RELATED PROTEIN KINASE 3.21 -0.409 -0.066
96 252488_at AT3G46700 [UDP-Glycosyltransferase superfamily protein] -0.401 0.080
97 261180_at AT1G34590 unknown -0.366 0.058
98 254629_at AT4G18425 unknown -0.360 -0.208
99 245423_at AT4G17483 [alpha/beta-Hydrolases superfamily protein] -0.359 0.043
100 262425_at AT1G47660 unknown -0.356 -0.023
101 259618_at AT1G48000 AtMYB112, myb domain protein 112, MYB112, myb domain protein 112 -0.353 -0.085
102 252098_at AT3G51330 [Eukaryotic aspartyl protease family protein] -0.342 -0.188
103 249402_at AT5G40155 [Defensin-like (DEFL) family protein] -0.335 0.041
104 248172_at AT5G54660 [HSP20-like chaperones superfamily protein] -0.323 0.065
105 246335_at AT3G44880 ACD1, ACCELERATED CELL DEATH 1, LLS1, LETHAL LEAF-SPOT 1 HOMOLOG, PAO, PHEOPHORBIDE A OXYGENASE -0.321 -0.110
106 251646_at AT3G57780 unknown -0.317 -0.104
107 264532_at AT1G55740 AtSIP1, seed imbibition 1, RS1, raffinose synthase 1, SIP1, seed imbibition 1 -0.309 0.041
108 255726_at AT1G25530 [Transmembrane amino acid transporter family protein] -0.307 -0.114
109 265913_at AT2G25625 unknown -0.307 0.017
110 251555_at AT3G58780 AGL1, AGAMOUS-like 1, SHP1, SHATTERPROOF 1 -0.304 0.005
111 261609_at AT1G49740 [PLC-like phosphodiesterases superfamily protein] -0.299 0.064
112 260968_at AT1G12250 [Pentapeptide repeat-containing protein] -0.289 -0.128
113 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] -0.285 -0.022
114 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.283 -0.032
115 248236_at AT5G53870 AtENODL1, ENODL1, early nodulin-like protein 1 -0.275 -0.195
116 246781_at AT5G27350 SFP1 -0.272 -0.030
117 260582_at AT2G47200 unknown -0.269 -0.019
118 263668_at AT1G04350 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.265 0.112
119 260943_at AT1G45145 ATH5, THIOREDOXIN H-TYPE 5, ATTRX5, thioredoxin H-type 5, LIV1, LOCUS OF INSENSITIVITY TO VICTORIN 1, TRX-h5, THIOREDOXIN H-TYPE 5, TRX5, thioredoxin H-type 5 -0.264 0.020
120 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -0.264 0.071
121 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] -0.262 -0.086
122 257737_at AT3G27440 UKL5, uridine kinase-like 5 -0.253 -0.121
123 265728_at AT2G31990 [Exostosin family protein] -0.246 -0.000
124 263258_at AT1G10540 ATNAT8, NAT8, nucleobase-ascorbate transporter 8 -0.246 -0.082
125 264685_at AT1G65610 ATGH9A2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, KOR2, KORRIGAN 2 -0.244 -0.116
126 258323_at AT3G22750 [Protein kinase superfamily protein] -0.242 -0.108
127 256564_at AT3G29770 ATMES11, ARABIDOPSIS THALIANA METHYL ESTERASE 11, MES11, methyl esterase 11 -0.239 -0.055
128 260109_at AT1G63260 TET10, tetraspanin10 -0.236 0.020
129 253725_at AT4G29340 PRF4, profilin 4 -0.235 0.102
130 244949_at ATMG00150 ORF116 -0.232 -0.007
131 255716_at AT4G00330 CRCK2, calmodulin-binding receptor-like cytoplasmic kinase 2 -0.232 0.038
132 257800_at AT3G15900 unknown -0.227 -0.036
133 245936_at AT5G19850 [alpha/beta-Hydrolases superfamily protein] -0.225 -0.082
134 247136_at AT5G66170 STR18, sulfurtransferase 18 -0.224 -0.002
135 266179_at AT2G02300 AtPP2-B5, phloem protein 2-B5, PP2-B5, phloem protein 2-B5 -0.224 -0.082
136 246857_at AT5G25920 unknown -0.223 -0.010
137 266604_at AT2G46030 UBC6, ubiquitin-conjugating enzyme 6 -0.222 -0.047
138 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.210 0.001
139 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.210 0.063
140 246954_at AT5G04830 [Nuclear transport factor 2 (NTF2) family protein] -0.205 -0.023
141 259410_at AT1G13340 [Regulator of Vps4 activity in the MVB pathway protein] -0.205 0.041
142 246375_at AT1G51830 [Leucine-rich repeat protein kinase family protein] -0.204 0.085
143 251545_at AT3G58810 ATMTP3, ARABIDOPSIS METAL TOLERANCE PROTEIN 3, ATMTPA2, MTP3, METAL TOLERANCE PROTEIN 3, MTPA2, metal tolerance protein A2 -0.204 -0.008
144 258085_at AT3G26100 [Regulator of chromosome condensation (RCC1) family protein] -0.203 0.022
145 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -0.202 0.215
146 258880_at AT3G06420 ATG8H, autophagy 8h -0.197 0.007
147 247734_at AT5G59400 unknown -0.195 -0.043
148 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -0.193 0.050
149 256883_at AT3G26440 unknown -0.190 0.153
150 252068_at AT3G51440 [Calcium-dependent phosphotriesterase superfamily protein] -0.187 -0.024
151 249779_at AT5G24230 [Lipase class 3-related protein] -0.185 -0.119
152 262183_at AT1G77890 [DNA-directed RNA polymerase II protein] -0.183 -0.075
153 246197_at AT4G37010 CEN2, centrin 2 -0.183 0.150
154 253147_at AT4G35600 CST, CAST AWAY, CX32, CONNEXIN 32, Kin4, kinase 4 -0.182 0.045
155 255400_at AT4G03760 [pseudogene] -0.182 0.054
156 255463_at AT4G02960 ATRE2, retro element 2, RE2, retro element 2 -0.180 -0.025
157 251722_at AT3G56200 [Transmembrane amino acid transporter family protein] -0.179 -0.129
158 245932_at AT5G09290 [Inositol monophosphatase family protein] -0.178 -0.126
159 249807_at AT5G23870 [Pectinacetylesterase family protein] -0.176 -0.119
160 261973_at AT1G64610 [Transducin/WD40 repeat-like superfamily protein] -0.175 0.076
161 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 -0.173 0.138