4.0:Information of module
OxPHR1 -Pi-DEX-CHX
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019375 galactolipid biosynthetic process BP 3.161e-21
GO:0019374 galactolipid metabolic process BP 5.905e-21
GO:0016036 cellular response to phosphate starvatio... BP 4.842e-20
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006569 tryptophan catabolic process BP 4.203e-04
GO:0042436 indole-containing compound catabolic pro... BP 4.203e-04
GO:0046218 indolalkylamine catabolic process BP 4.203e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
OxPHR1 -Pi-DEX-CHX		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 250091_at AT5G17340 [Putative membrane lipoprotein] 1.562 -0.616
2 257645_at AT3G25790 [myb-like transcription factor family protein] 1.377 -0.136
3 266766_at AT2G46880 ATPAP14, PAP14, purple acid phosphatase 14 1.343 -0.631
4 245468_at AT4G15980 [Plant invertase/pectin methylesterase inhibitor superfamily] 1.289 -0.066
5 249150_at AT5G43340 PHT1;6, phosphate transporter 1;6, PHT6, PHOSPHATE TRANSPORTER 6 1.198 -0.946
6 259814_at AT1G49900 [C2H2 type zinc finger transcription factor family] 1.179 0.162
7 254097_at AT4G25160 [U-box domain-containing protein kinase family protein] 1.140 -0.968
8 264520_at AT1G10010 AAP8, amino acid permease 8, ATAAP8 1.138 -0.766
9 259399_at AT1G17710 AtPEPC1, Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, PEPC1, phosphoethanolamine/phosphocholine phosphatase 1 1.104 -0.326
10 256672_at AT3G52310 ABCG27, ATP-binding cassette G27 1.087 -0.018
11 252730_at AT3G43110 unknown 1.059 -0.266
12 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 1.057 0.494
13 259974_at AT1G76430 PHT1;9, phosphate transporter 1;9 1.038 -0.730
14 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 1.020 -1.011
15 250561_at AT5G08030 AtGDPD6, GDPD6, glycerophosphodiester phosphodiesterase 6 0.992 -0.635
16 254111_at AT4G24890 ATPAP24, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, PAP24, purple acid phosphatase 24 0.985 -1.015
17 266092_at AT2G37880 unknown 0.975 0.284
18 264378_at AT2G25220 [Protein kinase superfamily protein] 0.975 1.078
19 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.961 -0.726
20 258901_at AT3G05640 [Protein phosphatase 2C family protein] 0.956 -0.131
21 253998_at AT4G26010 [Peroxidase superfamily protein] 0.937 -0.029
22 248496_at AT5G50790 AtSWEET10, SWEET10 0.926 -0.861
23 267343_at AT2G44260 unknown 0.921 -0.445
24 260713_at AT1G17615 [Disease resistance protein (TIR-NBS class)] 0.919 -1.531
25 251143_at AT5G01220 SQD2, sulfoquinovosyldiacylglycerol 2 0.905 0.674
26 247531_at AT5G61550 [U-box domain-containing protein kinase family protein] 0.899 -0.647
27 261814_at AT1G08310 [alpha/beta-Hydrolases superfamily protein] 0.886 -0.913
28 263391_at AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C 0.886 -0.412
29 247519_at AT5G61430 ANAC100, NAC domain containing protein 100, ATNAC5, NAC100, NAC domain containing protein 100 0.856 -0.764
30 256014_at AT1G19200 unknown 0.841 -0.275
31 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.840 -0.761
32 259346_at AT3G03910 glutamate dehydrogenase 3 0.839 -0.157
33 248189_at AT5G54090 [DNA mismatch repair protein MutS, type 2] 0.837 -0.607
34 255175_at AT4G07960 ATCSLC12, Cellulose-synthase-like C12, CSLC12, CELLULOSE-SYNTHASE LIKE C12, CSLC12, Cellulose-synthase-like C12 0.828 -0.442
35 266132_at AT2G45130 ATSPX3, ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX3, SPX domain gene 3 0.824 -0.778
36 246342_at AT3G56700 AtFAR6, FAR6, fatty acid reductase 6 0.819 -1.364
37 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] 0.810 -0.310
38 249465_at AT5G39720 AIG2L, avirulence induced gene 2 like protein 0.808 -0.726
39 256519_at AT1G66110 unknown 0.806 -1.291
40 247961_at AT5G56570 [Leucine-rich repeat (LRR) family protein] 0.804 -0.649
41 258172_at AT3G21620 [ERD (early-responsive to dehydration stress) family protein] 0.803 -0.901
42 264272_at AT1G60280 ANAC023, NAC domain containing protein 23, NAC023, NAC domain containing protein 23 0.787 -0.865
43 258887_at AT3G05630 PDLZ2, PHOSPHOLIPASE D ZETA 2, PLDP2, phospholipase D P2, PLDZETA2, PHOSPHOLIPASE D ZETA 2 0.780 -0.076
44 251420_at AT3G60490 [Integrase-type DNA-binding superfamily protein] 0.750 -0.233
45 251301_at AT3G61880 CYP78A9, cytochrome p450 78a9 0.750 -0.926
46 262350_at AT2G48150 ATGPX4, glutathione peroxidase 4, GPX4, glutathione peroxidase 4 0.748 -1.818
47 264823_at AT1G03445 BSU1, BRI1 SUPPRESSOR 1 0.743 0.491
48 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.741 -0.781
49 245090_at AT2G40900 UMAMIT11, Usually multiple acids move in and out Transporters 11 0.739 -0.584
50 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] 0.732 0.223
51 260148_at AT1G52800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.731 -0.612
52 267389_at AT2G44460 BGLU28, beta glucosidase 28 0.712 -0.448
53 262231_at AT1G68740 PHO1;H1 0.700 -0.329
54 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 0.698 -0.165
55 253784_at AT4G28610 AtPHR1, PHR1, phosphate starvation response 1 0.690 0.216
56 251236_at AT3G62380 unknown 0.685 -0.774
57 246001_at AT5G20790 unknown 0.685 1.230
58 258969_at AT3G10680 [HSP20-like chaperones superfamily protein] 0.685 0.315
59 253296_at AT4G33770 ITPK2, inositol 1,3,4-trisphosphate 5/6 kinase 2 0.670 -0.392
60 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.655 0.234
61 254096_at AT4G25150 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.653 0.056
62 263879_at AT2G22030 [Galactose oxidase/kelch repeat superfamily protein] 0.651 -0.301
63 246251_at AT4G37220 [Cold acclimation protein WCOR413 family] 0.643 -0.828
64 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 0.632 -0.503
65 255950_at AT1G22110 [structural constituent of ribosome] 0.631 -0.084
66 264638_at AT1G65480 FT, FLOWERING LOCUS T, RSB8, REDUCED STEM BRANCHING 8 0.624 -1.484
67 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 0.613 -0.897
68 263987_at AT2G42690 [alpha/beta-Hydrolases superfamily protein] 0.609 0.749
69 267322_at AT2G19330 PIRL6, plant intracellular ras group-related LRR 6 0.604 -0.639
70 261636_at AT1G50110 [D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein] 0.602 -0.223
71 253519_at AT4G31240 AtNRX2, NRX2, nucleoredoxin 2 0.599 0.110
72 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 0.596 0.215
73 250750_at AT5G05870 UGT76C1, UDP-glucosyl transferase 76C1 0.595 0.851
74 255924_at AT1G22170 [Phosphoglycerate mutase family protein] 0.595 0.162
75 258854_at AT3G02100 [UDP-Glycosyltransferase superfamily protein] 0.587 -0.881
76 247536_at AT5G61650 CYCP4, CYCP4;2, CYCLIN P4;2 0.573 -0.805
77 261256_at AT1G05760 RTM1, restricted tev movement 1 0.571 1.119
78 246498_at AT5G16230 [Plant stearoyl-acyl-carrier-protein desaturase family protein] 0.568 -0.196
79 260906_at AT1G02540 unknown 0.562 -1.147
80 263083_at AT2G27190 ATPAP1, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, ATPAP12, PURPLE ACID PHOSPHATASE 12, PAP1, PURPLE ACID PHOSPHATASE 1, PAP12, purple acid phosphatase 12 0.555 1.684
81 264694_at AT1G70250 [receptor serine/threonine kinase, putative] 0.552 -0.474
82 258860_at AT3G02050 ATKT4, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, ATKUP3, KUP3, K+ uptake transporter 3 0.552 -0.318
83 262802_at AT1G20930 CDKB2;2, cyclin-dependent kinase B2;2 0.551 0.437
84 263851_at AT2G04460 unknown 0.538 0.298
85 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 0.534 -0.399
86 257217_at AT3G14940 ATPPC3, phosphoenolpyruvate carboxylase 3, PPC3, phosphoenolpyruvate carboxylase 3 0.532 0.720
87 260549_at AT2G43535 [Scorpion toxin-like knottin superfamily protein] 0.531 0.047
88 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] 0.528 0.663
89 259334_at AT3G03790 [ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein] 0.515 0.691
90 252011_at AT3G52720 ACA1, alpha carbonic anhydrase 1, ATACA1, A. THALIANA ALPHA CARBONIC ANHYDRASE 1, CAH1, CARBONIC ANHYDRASE 1 0.515 -0.458
91 255427_at AT4G03380 unknown 0.512 -0.165
92 247754_at AT5G59080 unknown 0.500 -0.198
93 264729_at AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 0.497 0.329
94 263197_at AT1G53930 [Ubiquitin-like superfamily protein] 0.490 -1.098
95 266508_at AT2G47920 NET3C, Networked 3C 0.489 0.163
96 259015_at AT3G07350 unknown 0.488 -0.384
97 248006_at AT5G56250 HAP8, HAPLESS 8 0.488 -0.373
98 267423_at AT2G35060 KUP11, K+ uptake permease 11 0.486 0.284
99 266516_at AT2G47880 [Glutaredoxin family protein] -0.396 0.348
100 252639_at AT3G44550 FAR5, fatty acid reductase 5 -0.325 -0.683
101 258209_at AT3G14060 unknown -0.320 -0.848
102 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 -0.319 -0.004
103 264433_at AT1G61810 BGLU45, beta-glucosidase 45 -0.258 -1.190
104 244977_at ATCG00730 PETD, photosynthetic electron transfer D -0.251 -1.159
105 245015_at ATCG00490 RBCL -0.250 -0.502
106 248888_at AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 -0.249 -0.010
107 245384_at AT4G16790 [hydroxyproline-rich glycoprotein family protein] -0.233 -0.215
108 250600_at AT5G07800 [Flavin-binding monooxygenase family protein] -0.233 0.429
109 260004_at AT1G67860 unknown -0.224 -0.226
110 267380_at AT2G26170 CYP711A1, cytochrome P450, family 711, subfamily A, polypeptide 1, MAX1, MORE AXILLARY BRANCHES 1 -0.221 -0.206
111 259765_at AT1G64370 unknown -0.215 -0.759
112 260666_at AT1G19300 ATGATL1, GATL1, GALACTURONOSYLTRANSFERASE-LIKE 1, GLZ1, GAOLAOZHUANGREN 1, PARVUS, PARVUS -0.205 -0.885
113 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.201 0.165
114 256255_at AT3G11280 [Duplicated homeodomain-like superfamily protein] -0.198 -0.652
115 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.196 -0.083
116 264466_at AT1G10380 [Putative membrane lipoprotein] -0.189 -0.786
117 262753_at AT1G16340 ATKDSA2, ATKSDA -0.182 0.188
118 266222_at AT2G28780 unknown -0.180 -0.244
119 262873_at AT1G64700 unknown -0.176 -0.666
120 253181_at AT4G35180 LHT7, LYS/HIS transporter 7 -0.174 -0.871
121 251197_at AT3G62960 [Thioredoxin superfamily protein] -0.170 -1.130
122 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 -0.167 -0.398
123 249775_at AT5G24160 SQE6, squalene monoxygenase 6 -0.164 0.185
124 254174_at AT4G24120 ATYSL1, YELLOW STRIPE LIKE 1, YSL1, YELLOW STRIPE like 1 -0.156 0.099
125 254271_at AT4G23150 CRK7, cysteine-rich RLK (RECEPTOR-like protein kinase) 7 -0.153 -0.951
126 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 -0.148 0.215
127 256731_at AT3G30340 UMAMIT32, Usually multiple acids move in and out Transporters 32 -0.146 0.038
128 258150_at AT3G18160 PEX3-1, peroxin 3-1 -0.145 1.061
129 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] -0.143 -0.024
130 264346_at AT1G12010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.140 -0.479
131 255626_at AT4G00780 [TRAF-like family protein] -0.136 0.074
132 265870_at AT2G01660 PDLP6, plasmodesmata-located protein 6 -0.136 -0.233
133 246769_at AT5G27440 unknown -0.135 0.871
134 265338_at AT2G18400 [ribosomal protein L6 family protein] -0.134 -0.121
135 256336_at AT1G72030 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.133 0.785
136 261762_at AT1G15510 ATECB2, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, ECB2, EARLY CHLOROPLAST BIOGENESIS2, VAC1, VANILLA CREAM 1 -0.132 -0.001
137 264605_at AT1G04550 BDL, BODENLOS, IAA12, indole-3-acetic acid inducible 12 -0.132 -0.315
138 249612_at AT5G37290 [ARM repeat superfamily protein] -0.132 1.142
139 260076_at AT1G73630 [EF hand calcium-binding protein family] -0.127 -0.715
140 260189_at AT1G67550 URE, urease -0.127 -0.160
141 256529_at AT1G33260 [Protein kinase superfamily protein] -0.127 -1.104
142 245346_at AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase -0.126 -1.436
143 247255_at AT5G64780 [Uncharacterised conserved protein UCP009193] -0.125 -0.760
144 247440_at AT5G62680 AtNPF2.11, GTR2, GLUCOSINOLATE TRANSPORTER-2, NPF2.11, NRT1/ PTR family 2.11 -0.125 -0.010
145 248008_at AT5G56270 ATWRKY2, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY2, WRKY DNA-binding protein 2 -0.125 -0.389
146 251669_at AT3G57180 BPG2, BRASSINAZOLE(BRZ) INSENSITIVE PALE GREEN 2 -0.125 1.040
147 252478_at AT3G46540 [ENTH/VHS family protein] -0.124 0.489
148 247688_at AT5G59760 unknown -0.124 -1.016
149 249028_at AT5G44740 POLH, Y-family DNA polymerase H -0.121 0.442
150 263919_at AT2G36470 unknown -0.119 -0.914
151 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B -0.117 -0.197
152 263159_at AT1G54130 AT-RSH3, ATRSH3, RELA/SPOT HOMOLOG 3, RSH3, RELA/SPOT homolog 3 -0.117 0.976
153 245330_at AT4G14930 [Survival protein SurE-like phosphatase/nucleotidase] -0.116 0.294
154 250109_at AT5G15230 GASA4, GAST1 protein homolog 4 -0.116 0.760
155 254292_at AT4G23030 [MATE efflux family protein] -0.112 0.371
156 252572_at AT3G45290 ATMLO3, MILDEW RESISTANCE LOCUS O 3, MLO3, MILDEW RESISTANCE LOCUS O 3 -0.112 -0.842
157 262711_at AT1G16500 unknown -0.111 -0.260
158 249821_at AT5G23690 [Polynucleotide adenylyltransferase family protein] -0.111 0.297
159 267636_at AT2G42110 unknown -0.110 -0.363
160 264055_at AT2G28590 [Protein kinase superfamily protein] -0.109 -0.001
161 247282_at AT5G64240 AtMC3, metacaspase 3, AtMCP1a, metacaspase 1a, MC3, metacaspase 3, MCP1a, metacaspase 1a -0.104 0.052
162 262793_at AT1G13110 CYP71B7, cytochrome P450, family 71 subfamily B, polypeptide 7 -0.101 0.703
163 259570_at AT1G20440 AtCOR47, COR47, cold-regulated 47, RD17 -0.099 0.133
164 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 -0.098 0.042
165 249365_at AT5G40600 unknown -0.096 0.329
166 259596_at AT1G28130 GH3.17 -0.095 0.478
167 253589_at AT4G30825 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.095 -0.257
168 253210_at AT4G34840 ATMTAN2, ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 2, ATMTN2, ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 2, MTAN2, METHYLTHIOADENOSINE NUCLEOSIDASE 2, MTN2, methylthioadenosine nucleosidase 2 -0.094 0.300
169 250823_at AT5G05180 unknown -0.094 0.530
170 264968_at AT1G67360 [Rubber elongation factor protein (REF)] -0.093 0.571
171 246749_at AT5G27830 unknown -0.092 0.928
172 267068_at AT2G41020 [WW domain-containing protein] -0.092 -0.352
173 262996_at AT1G54440 [Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain] -0.092 0.920
174 252421_at AT3G47540 [Chitinase family protein] -0.091 -0.544
175 265667_at AT2G27470 NF-YB11, nuclear factor Y, subunit B11 -0.089 0.512
176 250987_at AT5G02860 [Pentatricopeptide repeat (PPR) superfamily protein] -0.088 -0.353
177 266079_at AT2G37860 LCD1, LOWER CELL DENSITY 1 -0.087 1.366
178 264517_at AT1G10120 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.086 0.290
179 257805_at AT3G18830 ATPLT5, POLYOL TRANSPORTER 5, ATPMT5, ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, PMT5, polyol/monosaccharide transporter 5 -0.085 1.172
180 265429_at AT2G20710 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.085 -0.396
181 256821_at AT3G22180 [DHHC-type zinc finger family protein] -0.085 -0.659
182 246238_at AT4G36670 AtPLT6, AtPMT6, PLT6, polyol transporter 6, PMT6, polyol/monosaccharide transporter 6 -0.085 0.572
183 259928_at AT1G34380 [5'-3' exonuclease family protein] -0.082 -0.164
184 264407_at AT1G10180 unknown -0.082 0.732
185 247034_at AT5G67260 CYCD3;2, CYCLIN D3;2 -0.080 0.764
186 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 -0.079 -0.384
187 250542_at AT5G08270 unknown -0.078 -0.071
188 249606_at AT5G37260 CIR1, CIRCADIAN 1, RVE2, REVEILLE 2 -0.077 -0.397
189 263777_at AT2G46450 ATCNGC12, cyclic nucleotide-gated channel 12, CNGC12, cyclic nucleotide-gated channel 12 -0.076 0.539
190 245301_at AT4G17190 FPS2, farnesyl diphosphate synthase 2 -0.074 0.279
191 252418_at AT3G47490 [HNH endonuclease] -0.074 0.383
192 255013_at AT4G10000 [Thioredoxin family protein] -0.074 0.765
193 263647_at AT2G04690 Pyridoxamine 5'-phosphate oxidase family protein -0.073 0.987
194 253534_at AT4G31500 ATR4, ALTERED TRYPTOPHAN REGULATION 4, CYP83B1, cytochrome P450, family 83, subfamily B, polypeptide 1, RED1, RED ELONGATED 1, RNT1, RUNT 1, SUR2, SUPERROOT 2 -0.071 0.694
195 251372_at AT3G60520 unknown -0.071 -0.697