4.0:Information of module
downy mildew cotyledons late stage
In comparison with AgNO3 3 h  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 4.215e-40
GO:0006955 immune response BP 2.403e-37
GO:0045087 innate immune response BP 2.403e-37
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 1.155e-14
GO:0048511 rhythmic process BP 1.155e-14
GO:0005982 starch metabolic process BP 8.607e-13
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
downy mildew cotyledons late stage		 Log2 signal ratio
AgNO3 3 h
1 259385_at AT1G13470 unknown 1.146 0.064
2 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 1.072 0.373
3 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 1.022 0.375
4 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 0.913 0.347
5 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.873 0.075
6 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) 0.867 0.125
7 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 0.752 1.024
8 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 0.724 0.027
9 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] 0.718 0.179
10 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 0.711 0.091
11 261020_at AT1G26390 [FAD-binding Berberine family protein] 0.707 0.127
12 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 0.670 0.225
13 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.647 0.277
14 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.635 0.040
15 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.616 0.735
16 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.584 0.423
17 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 0.548 0.109
18 250942_at AT5G03350 [Legume lectin family protein] 0.546 -0.092
19 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.524 0.235
20 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 0.486 0.271
21 263032_at AT1G23850 unknown 0.485 0.321
22 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.473 0.909
23 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 0.473 -0.044
24 252921_at AT4G39030 EDS5, ENHANCED DISEASE SUSCEPTIBILITY 5, SCORD3, susceptible to coronatine-deficient Pst DC3000 3, SID1, SALICYLIC ACID INDUCTION DEFICIENT 1 0.460 0.292
25 265161_at AT1G30900 BP80-3;3, binding protein of 80 kDa 3;3, VSR3;3, VACUOLAR SORTING RECEPTOR 3;3, VSR6, VACUOLAR SORTING RECEPTOR 6 0.459 -0.043
26 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.454 0.157
27 258787_at AT3G11840 PUB24, plant U-box 24 0.421 0.612
28 253405_at AT4G32800 [Integrase-type DNA-binding superfamily protein] 0.412 0.211
29 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 0.408 -0.174
30 261585_at AT1G01010 ANAC001, NAC domain containing protein 1, NAC001, NAC domain containing protein 1 0.397 0.300
31 251633_at AT3G57460 [catalytics] 0.393 0.051
32 247835_at AT5G57910 unknown 0.392 0.515
33 245052_at AT2G26440 PME12, pectin methylesterase 12 0.379 0.266
34 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 0.363 0.394
35 259518_at AT1G20510 OPCL1, OPC-8:0 CoA ligase1 0.362 0.434
36 259058_at AT3G03470 CYP89A9, cytochrome P450, family 87, subfamily A, polypeptide 9 0.353 0.299
37 262542_at AT1G34180 anac016, NAC domain containing protein 16, NAC016, NAC domain containing protein 16 0.348 0.448
38 253401_at AT4G32870 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.344 -0.052
39 256593_at AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.339 0.039
40 251259_at AT3G62260 [Protein phosphatase 2C family protein] 0.337 0.239
41 255406_at AT4G03450 [Ankyrin repeat family protein] 0.331 0.215
42 258982_at AT3G08870 LecRK-VI.1, L-type lectin receptor kinase VI.1 0.331 0.131
43 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.314 0.181
44 254275_at AT4G22670 AtHip1, HSP70-interacting protein 1, HIP1, HSP70-interacting protein 1, TPR11, tetratricopeptide repeat 11 0.306 -0.040
45 265723_at AT2G32140 [transmembrane receptors] 0.304 0.283
46 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 0.304 0.318
47 258507_at AT3G06500 A/N-InvC, alkaline/neutral invertase C 0.301 0.350
48 250858_at AT5G04760 [Duplicated homeodomain-like superfamily protein] 0.297 0.201
49 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.296 0.154
50 264636_at AT1G65490 unknown 0.289 -0.203
51 254318_at AT4G22530 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.287 0.780
52 266993_at AT2G39210 [Major facilitator superfamily protein] 0.280 0.218
53 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.280 0.935
54 261564_at AT1G01720 ANAC002, Arabidopsis NAC domain containing protein 2, ATAF1 0.277 0.301
55 266977_at AT2G39420 [alpha/beta-Hydrolases superfamily protein] 0.277 0.086
56 255787_at AT2G33590 AtCRL1, CRL1, CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1 0.275 0.201
57 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.273 0.427
58 254784_at AT4G12720 AtNUDT7, Arabidopsis thaliana Nudix hydrolase homolog 7, GFG1, GROWTH FACTOR GENE 1, NUDT7 0.264 0.249
59 247351_at AT5G63790 ANAC102, NAC domain containing protein 102, NAC102, NAC domain containing protein 102 0.262 0.356
60 246631_at AT1G50740 [Transmembrane proteins 14C] 0.260 0.294
61 254673_at AT4G18430 AtRABA1e, RAB GTPase homolog A1E, RABA1e, RAB GTPase homolog A1E 0.258 0.354
62 259418_at AT1G02390 ATGPAT2, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 2, GPAT2, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 2 0.255 0.065
63 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] 0.251 0.332
64 267076_at AT2G41090 [Calcium-binding EF-hand family protein] 0.249 0.106
65 265728_at AT2G31990 [Exostosin family protein] 0.231 0.182
66 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] 0.226 -0.282
67 254573_at AT4G19420 [Pectinacetylesterase family protein] 0.224 -0.139
68 253284_at AT4G34150 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.222 0.189
69 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.220 0.530
70 267490_at AT2G19130 [S-locus lectin protein kinase family protein] 0.219 0.293
71 256529_at AT1G33260 [Protein kinase superfamily protein] 0.217 -0.192
72 267008_at AT2G39350 ABCG1, ATP-binding cassette G1 0.217 0.499
73 245731_at AT1G73500 ATMKK9, MKK9, MAP kinase kinase 9 0.214 0.403
74 262254_at AT1G53920 GLIP5, GDSL-motif lipase 5 0.212 0.012
75 248959_at AT5G45630 unknown 0.212 -0.057
76 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.211 0.401
77 256060_at AT1G07050 [CCT motif family protein] -0.979 -0.085
78 248744_at AT5G48250 BBX8, B-box domain protein 8 -0.658 0.032
79 256602_at AT3G28310 unknown -0.611 0.032
80 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.592 -0.052
81 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 -0.564 -0.067
82 256631_at AT3G28320 unknown -0.560 -0.050
83 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.556 -0.129
84 253322_at AT4G33980 unknown -0.521 0.145
85 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.508 -0.002
86 247867_at AT5G57630 CIPK21, CBL-interacting protein kinase 21, SnRK3.4, SNF1-RELATED PROTEIN KINASE 3.4 -0.506 0.160
87 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 -0.479 -0.027
88 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.478 0.620
89 259595_at AT1G28050 BBX13, B-box domain protein 13 -0.462 0.176
90 250194_at AT5G14550 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.451 0.093
91 246525_at AT5G15840 BBX1, B-box domain protein 1, CO, CONSTANS, FG -0.440 0.068
92 267280_at AT2G19450 ABX45, AS11, ATDGAT, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, AtDGAT1, DGAT1, acyl-CoA:diacylglycerol acyltransferase 1, RDS1, TAG1, TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1 -0.438 0.052
93 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.422 -0.061
94 247525_at AT5G61380 APRR1, AtTOC1, TIMING OF CAB EXPRESSION 1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TOC1, TIMING OF CAB EXPRESSION 1 -0.422 -0.020
95 251753_at AT3G55760 unknown -0.421 -0.041
96 262892_at AT1G79440 ALDH5F1, aldehyde dehydrogenase 5F1, ENF1, ENLARGED FIL EXPRESSION DOMAIN 1, SSADH, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, SSADH1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1 -0.395 0.028
97 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 -0.383 -0.066
98 266839_at AT2G25930 ELF3, EARLY FLOWERING 3, PYK20 -0.357 -0.038
99 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.356 -0.231
100 249053_at AT5G44440 [FAD-binding Berberine family protein] -0.354 -0.161
101 247786_at AT5G58600 PMR5, POWDERY MILDEW RESISTANT 5, TBL44, TRICHOME BIREFRINGENCE-LIKE 44 -0.352 -0.097
102 261203_at AT1G12845 unknown -0.351 -0.196
103 247216_at AT5G64860 DPE1, disproportionating enzyme -0.349 -0.051
104 255070_at AT4G09020 ATISA3, ISA3, isoamylase 3 -0.346 -0.019
105 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.341 -0.093
106 254645_at AT4G18520 SEL1, SEEDLING LETHAL 1 -0.337 -0.130
107 260636_at AT1G62430 ATCDS1, CDP-diacylglycerol synthase 1, CDS1, CDP-diacylglycerol synthase 1 -0.325 -0.068
108 247348_at AT5G63810 AtBGAL10, Arabidopsis thaliana beta-galactosidase 10, BGAL10, beta-galactosidase 10 -0.315 -0.176
109 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 -0.306 -0.185
110 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 -0.306 -0.196
111 249869_at AT5G23050 AAE17, acyl-activating enzyme 17 -0.305 0.061
112 266225_at AT2G28900 ATOEP16-1, outer plastid envelope protein 16-1, ATOEP16-L, OUTER PLASTID ENVELOPE PROTEIN 16-L, OEP16, outer envelope protein 16, OEP16-1, outer plastid envelope protein 16-1 -0.300 0.001
113 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 -0.299 -0.273
114 264211_at AT1G22770 FB, GI, GIGANTEA -0.297 -0.176
115 248888_at AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 -0.290 -0.038
116 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.284 0.004
117 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.282 0.021
118 265078_at AT1G55500 ECT4, evolutionarily conserved C-terminal region 4 -0.280 0.327
119 258409_at AT3G17640 [Leucine-rich repeat (LRR) family protein] -0.273 -0.138
120 266439_s_at AT2G43200 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.272 -0.167
121 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 -0.270 -0.108
122 248502_at AT5G50450 [HCP-like superfamily protein with MYND-type zinc finger] -0.266 -0.073
123 253351_at AT4G33700 unknown -0.259 -0.011
124 262784_at AT1G10760 GWD, GWD1, SEX1, STARCH EXCESS 1, SOP, SOP1 -0.253 -0.053
125 250216_at AT5G14090 AtLAZY1, LAZY1, LAZY 1 -0.250 -0.098
126 254803_at AT4G13100 [RING/U-box superfamily protein] -0.250 -0.151
127 259014_at AT3G07320 [O-Glycosyl hydrolases family 17 protein] -0.249 -0.080
128 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 -0.248 -0.150
129 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 -0.248 -0.054
130 251432_at AT3G59820 AtLETM1, LETM1, leucine zipper-EF-hand-containing transmembrane protein 1 -0.248 -0.065
131 259600_at AT1G35220 unknown -0.247 -0.116
132 251494_at AT3G59350 [Protein kinase superfamily protein] -0.244 0.034
133 253421_at AT4G32340 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.243 -0.119
134 246483_at AT5G16000 AtNIK1, NIK1, NSP-interacting kinase 1 -0.241 -0.172
135 247744_at AT5G59020 unknown -0.240 0.012
136 257487_at AT1G71850 [Ubiquitin carboxyl-terminal hydrolase family protein] -0.239 -0.109
137 246516_at AT5G15740 [O-fucosyltransferase family protein] -0.238 -0.407
138 258719_at AT3G09540 [Pectin lyase-like superfamily protein] -0.238 -0.122
139 259303_at AT3G05130 unknown -0.237 -0.061
140 255931_at AT1G12710 AtPP2-A12, phloem protein 2-A12, PP2-A12, phloem protein 2-A12 -0.237 -0.016
141 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 -0.235 -0.208
142 246002_at AT5G20740 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.233 -0.190
143 247100_at AT5G66520 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.231 -0.226
144 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 -0.230 -0.274
145 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.230 -0.319
146 256822_at AT3G22190 IQD5, IQ-domain 5 -0.229 -0.055
147 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 -0.225 0.076
148 254430_at AT4G20820 [FAD-binding Berberine family protein] -0.222 -0.019
149 266598_at AT2G46110 KPHMT1, ketopantoate hydroxymethyltransferase 1, PANB1 -0.220 -0.159
150 263912_at AT2G36390 BE3, BRANCHING ENZYME 3, SBE2.1, starch branching enzyme 2.1 -0.217 0.003
151 263495_at AT2G42530 COR15B, cold regulated 15b -0.216 0.067