4.0:Information of module
downy mildew cotyledons late stage
In comparison with LWD1 and LWD2 in photoperiod regulation (lwd1lwd2 ) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 4.215e-40
GO:0006955 immune response BP 2.403e-37
GO:0045087 innate immune response BP 2.403e-37
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 1.155e-14
GO:0048511 rhythmic process BP 1.155e-14
GO:0005982 starch metabolic process BP 8.607e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
downy mildew cotyledons late stage		 Log2 signal ratio
LWD1 and LWD2 in photoperiod regulation (lwd1lwd2 )
1 259385_at AT1G13470 unknown 1.146 -0.226
2 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 1.072 -0.075
3 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 1.022 -0.260
4 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 0.913 -0.112
5 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.873 -0.283
6 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) 0.867 -0.639
7 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 0.752 -0.155
8 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 0.724 -0.471
9 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] 0.718 -0.080
10 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 0.711 -0.039
11 261020_at AT1G26390 [FAD-binding Berberine family protein] 0.707 0.051
12 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 0.670 -0.143
13 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.647 -0.365
14 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.635 -0.038
15 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.616 0.077
16 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.584 -0.148
17 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 0.548 -0.101
18 250942_at AT5G03350 [Legume lectin family protein] 0.546 -0.189
19 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.524 -0.052
20 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 0.486 0.014
21 263032_at AT1G23850 unknown 0.485 0.048
22 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.473 0.059
23 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 0.473 0.058
24 252921_at AT4G39030 EDS5, ENHANCED DISEASE SUSCEPTIBILITY 5, SCORD3, susceptible to coronatine-deficient Pst DC3000 3, SID1, SALICYLIC ACID INDUCTION DEFICIENT 1 0.460 0.078
25 265161_at AT1G30900 BP80-3;3, binding protein of 80 kDa 3;3, VSR3;3, VACUOLAR SORTING RECEPTOR 3;3, VSR6, VACUOLAR SORTING RECEPTOR 6 0.459 -0.255
26 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.454 -0.023
27 258787_at AT3G11840 PUB24, plant U-box 24 0.421 -0.103
28 253405_at AT4G32800 [Integrase-type DNA-binding superfamily protein] 0.412 0.136
29 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 0.408 -0.177
30 261585_at AT1G01010 ANAC001, NAC domain containing protein 1, NAC001, NAC domain containing protein 1 0.397 -0.072
31 251633_at AT3G57460 [catalytics] 0.393 0.024
32 247835_at AT5G57910 unknown 0.392 0.035
33 245052_at AT2G26440 PME12, pectin methylesterase 12 0.379 -0.123
34 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 0.363 -0.058
35 259518_at AT1G20510 OPCL1, OPC-8:0 CoA ligase1 0.362 -0.020
36 259058_at AT3G03470 CYP89A9, cytochrome P450, family 87, subfamily A, polypeptide 9 0.353 -0.190
37 262542_at AT1G34180 anac016, NAC domain containing protein 16, NAC016, NAC domain containing protein 16 0.348 0.081
38 253401_at AT4G32870 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.344 -0.124
39 256593_at AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.339 -0.145
40 251259_at AT3G62260 [Protein phosphatase 2C family protein] 0.337 0.136
41 255406_at AT4G03450 [Ankyrin repeat family protein] 0.331 -0.117
42 258982_at AT3G08870 LecRK-VI.1, L-type lectin receptor kinase VI.1 0.331 -0.356
43 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.314 -0.066
44 254275_at AT4G22670 AtHip1, HSP70-interacting protein 1, HIP1, HSP70-interacting protein 1, TPR11, tetratricopeptide repeat 11 0.306 0.020
45 265723_at AT2G32140 [transmembrane receptors] 0.304 0.191
46 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 0.304 -0.069
47 258507_at AT3G06500 A/N-InvC, alkaline/neutral invertase C 0.301 0.046
48 250858_at AT5G04760 [Duplicated homeodomain-like superfamily protein] 0.297 0.066
49 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.296 0.203
50 264636_at AT1G65490 unknown 0.289 -0.074
51 254318_at AT4G22530 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.287 -0.185
52 266993_at AT2G39210 [Major facilitator superfamily protein] 0.280 -0.153
53 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.280 -0.151
54 261564_at AT1G01720 ANAC002, Arabidopsis NAC domain containing protein 2, ATAF1 0.277 -0.112
55 266977_at AT2G39420 [alpha/beta-Hydrolases superfamily protein] 0.277 0.147
56 255787_at AT2G33590 AtCRL1, CRL1, CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1 0.275 -0.097
57 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.273 -0.023
58 254784_at AT4G12720 AtNUDT7, Arabidopsis thaliana Nudix hydrolase homolog 7, GFG1, GROWTH FACTOR GENE 1, NUDT7 0.264 0.015
59 247351_at AT5G63790 ANAC102, NAC domain containing protein 102, NAC102, NAC domain containing protein 102 0.262 0.027
60 246631_at AT1G50740 [Transmembrane proteins 14C] 0.260 0.040
61 254673_at AT4G18430 AtRABA1e, RAB GTPase homolog A1E, RABA1e, RAB GTPase homolog A1E 0.258 0.050
62 259418_at AT1G02390 ATGPAT2, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 2, GPAT2, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 2 0.255 -0.128
63 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] 0.251 -0.180
64 267076_at AT2G41090 [Calcium-binding EF-hand family protein] 0.249 -0.175
65 265728_at AT2G31990 [Exostosin family protein] 0.231 -0.037
66 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] 0.226 0.008
67 254573_at AT4G19420 [Pectinacetylesterase family protein] 0.224 -0.060
68 253284_at AT4G34150 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.222 0.043
69 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.220 -0.048
70 267490_at AT2G19130 [S-locus lectin protein kinase family protein] 0.219 -0.026
71 256529_at AT1G33260 [Protein kinase superfamily protein] 0.217 -0.263
72 267008_at AT2G39350 ABCG1, ATP-binding cassette G1 0.217 0.066
73 245731_at AT1G73500 ATMKK9, MKK9, MAP kinase kinase 9 0.214 0.155
74 262254_at AT1G53920 GLIP5, GDSL-motif lipase 5 0.212 0.066
75 248959_at AT5G45630 unknown 0.212 0.153
76 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.211 0.473
77 256060_at AT1G07050 [CCT motif family protein] -0.979 0.882
78 248744_at AT5G48250 BBX8, B-box domain protein 8 -0.658 0.470
79 256602_at AT3G28310 unknown -0.611 -0.057
80 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.592 0.246
81 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 -0.564 0.574
82 256631_at AT3G28320 unknown -0.560 -0.027
83 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.556 0.203
84 253322_at AT4G33980 unknown -0.521 0.809
85 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.508 1.053
86 247867_at AT5G57630 CIPK21, CBL-interacting protein kinase 21, SnRK3.4, SNF1-RELATED PROTEIN KINASE 3.4 -0.506 0.287
87 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 -0.479 0.085
88 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.478 -0.098
89 259595_at AT1G28050 BBX13, B-box domain protein 13 -0.462 0.303
90 250194_at AT5G14550 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.451 0.223
91 246525_at AT5G15840 BBX1, B-box domain protein 1, CO, CONSTANS, FG -0.440 0.087
92 267280_at AT2G19450 ABX45, AS11, ATDGAT, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, AtDGAT1, DGAT1, acyl-CoA:diacylglycerol acyltransferase 1, RDS1, TAG1, TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1 -0.438 0.248
93 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.422 0.288
94 247525_at AT5G61380 APRR1, AtTOC1, TIMING OF CAB EXPRESSION 1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TOC1, TIMING OF CAB EXPRESSION 1 -0.422 0.463
95 251753_at AT3G55760 unknown -0.421 -0.034
96 262892_at AT1G79440 ALDH5F1, aldehyde dehydrogenase 5F1, ENF1, ENLARGED FIL EXPRESSION DOMAIN 1, SSADH, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, SSADH1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1 -0.395 0.144
97 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 -0.383 0.240
98 266839_at AT2G25930 ELF3, EARLY FLOWERING 3, PYK20 -0.357 0.212
99 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.356 0.192
100 249053_at AT5G44440 [FAD-binding Berberine family protein] -0.354 -0.039
101 247786_at AT5G58600 PMR5, POWDERY MILDEW RESISTANT 5, TBL44, TRICHOME BIREFRINGENCE-LIKE 44 -0.352 0.193
102 261203_at AT1G12845 unknown -0.351 0.186
103 247216_at AT5G64860 DPE1, disproportionating enzyme -0.349 0.054
104 255070_at AT4G09020 ATISA3, ISA3, isoamylase 3 -0.346 0.084
105 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.341 0.314
106 254645_at AT4G18520 SEL1, SEEDLING LETHAL 1 -0.337 0.104
107 260636_at AT1G62430 ATCDS1, CDP-diacylglycerol synthase 1, CDS1, CDP-diacylglycerol synthase 1 -0.325 0.024
108 247348_at AT5G63810 AtBGAL10, Arabidopsis thaliana beta-galactosidase 10, BGAL10, beta-galactosidase 10 -0.315 0.196
109 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 -0.306 0.211
110 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 -0.306 -0.022
111 249869_at AT5G23050 AAE17, acyl-activating enzyme 17 -0.305 0.348
112 266225_at AT2G28900 ATOEP16-1, outer plastid envelope protein 16-1, ATOEP16-L, OUTER PLASTID ENVELOPE PROTEIN 16-L, OEP16, outer envelope protein 16, OEP16-1, outer plastid envelope protein 16-1 -0.300 0.106
113 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 -0.299 0.022
114 264211_at AT1G22770 FB, GI, GIGANTEA -0.297 0.185
115 248888_at AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 -0.290 -0.061
116 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.284 0.150
117 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.282 0.333
118 265078_at AT1G55500 ECT4, evolutionarily conserved C-terminal region 4 -0.280 0.009
119 258409_at AT3G17640 [Leucine-rich repeat (LRR) family protein] -0.273 0.024
120 266439_s_at AT2G43200 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.272 -0.205
121 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 -0.270 -0.109
122 248502_at AT5G50450 [HCP-like superfamily protein with MYND-type zinc finger] -0.266 0.409
123 253351_at AT4G33700 unknown -0.259 0.147
124 262784_at AT1G10760 GWD, GWD1, SEX1, STARCH EXCESS 1, SOP, SOP1 -0.253 0.091
125 250216_at AT5G14090 AtLAZY1, LAZY1, LAZY 1 -0.250 -0.057
126 254803_at AT4G13100 [RING/U-box superfamily protein] -0.250 -0.053
127 259014_at AT3G07320 [O-Glycosyl hydrolases family 17 protein] -0.249 0.168
128 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 -0.248 0.211
129 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 -0.248 0.286
130 251432_at AT3G59820 AtLETM1, LETM1, leucine zipper-EF-hand-containing transmembrane protein 1 -0.248 0.233
131 259600_at AT1G35220 unknown -0.247 0.012
132 251494_at AT3G59350 [Protein kinase superfamily protein] -0.244 0.404
133 253421_at AT4G32340 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.243 0.070
134 246483_at AT5G16000 AtNIK1, NIK1, NSP-interacting kinase 1 -0.241 0.009
135 247744_at AT5G59020 unknown -0.240 0.037
136 257487_at AT1G71850 [Ubiquitin carboxyl-terminal hydrolase family protein] -0.239 0.019
137 246516_at AT5G15740 [O-fucosyltransferase family protein] -0.238 0.005
138 258719_at AT3G09540 [Pectin lyase-like superfamily protein] -0.238 -0.091
139 259303_at AT3G05130 unknown -0.237 0.213
140 255931_at AT1G12710 AtPP2-A12, phloem protein 2-A12, PP2-A12, phloem protein 2-A12 -0.237 0.170
141 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 -0.235 0.300
142 246002_at AT5G20740 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.233 0.026
143 247100_at AT5G66520 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.231 -0.065
144 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 -0.230 -0.067
145 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.230 0.061
146 256822_at AT3G22190 IQD5, IQ-domain 5 -0.229 0.073
147 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 -0.225 -0.052
148 254430_at AT4G20820 [FAD-binding Berberine family protein] -0.222 -0.071
149 266598_at AT2G46110 KPHMT1, ketopantoate hydroxymethyltransferase 1, PANB1 -0.220 0.163
150 263912_at AT2G36390 BE3, BRANCHING ENZYME 3, SBE2.1, starch branching enzyme 2.1 -0.217 0.083
151 263495_at AT2G42530 COR15B, cold regulated 15b -0.216 0.219