4.0:Information of module
downy mildew cotyledons late stage
In comparison with root epidermis and lateral root cap -S help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 4.215e-40
GO:0006955 immune response BP 2.403e-37
GO:0045087 innate immune response BP 2.403e-37
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 1.155e-14
GO:0048511 rhythmic process BP 1.155e-14
GO:0005982 starch metabolic process BP 8.607e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
downy mildew cotyledons late stage		 Log2 signal ratio
root epidermis and lateral root cap -S
1 259385_at AT1G13470 unknown 1.146 -0.033
2 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 1.072 -0.004
3 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 1.022 -0.005
4 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 0.913 -0.022
5 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.873 -0.119
6 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) 0.867 -0.212
7 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 0.752 0.002
8 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 0.724 -0.088
9 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] 0.718 0.014
10 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 0.711 -0.003
11 261020_at AT1G26390 [FAD-binding Berberine family protein] 0.707 -0.114
12 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 0.670 -0.103
13 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.647 -0.099
14 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.635 -0.042
15 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.616 -0.280
16 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.584 -0.124
17 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 0.548 -0.261
18 250942_at AT5G03350 [Legume lectin family protein] 0.546 -0.001
19 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.524 -0.474
20 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 0.486 -0.367
21 263032_at AT1G23850 unknown 0.485 0.109
22 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.473 -0.093
23 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 0.473 -0.193
24 252921_at AT4G39030 EDS5, ENHANCED DISEASE SUSCEPTIBILITY 5, SCORD3, susceptible to coronatine-deficient Pst DC3000 3, SID1, SALICYLIC ACID INDUCTION DEFICIENT 1 0.460 -0.001
25 265161_at AT1G30900 BP80-3;3, binding protein of 80 kDa 3;3, VSR3;3, VACUOLAR SORTING RECEPTOR 3;3, VSR6, VACUOLAR SORTING RECEPTOR 6 0.459 -0.136
26 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.454 0.087
27 258787_at AT3G11840 PUB24, plant U-box 24 0.421 -0.367
28 253405_at AT4G32800 [Integrase-type DNA-binding superfamily protein] 0.412 0.046
29 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 0.408 -0.355
30 261585_at AT1G01010 ANAC001, NAC domain containing protein 1, NAC001, NAC domain containing protein 1 0.397 -0.106
31 251633_at AT3G57460 [catalytics] 0.393 -0.051
32 247835_at AT5G57910 unknown 0.392 -0.307
33 245052_at AT2G26440 PME12, pectin methylesterase 12 0.379 0.192
34 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 0.363 -0.217
35 259518_at AT1G20510 OPCL1, OPC-8:0 CoA ligase1 0.362 -0.104
36 259058_at AT3G03470 CYP89A9, cytochrome P450, family 87, subfamily A, polypeptide 9 0.353 -0.397
37 262542_at AT1G34180 anac016, NAC domain containing protein 16, NAC016, NAC domain containing protein 16 0.348 -0.024
38 253401_at AT4G32870 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.344 -0.255
39 256593_at AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.339 -0.055
40 251259_at AT3G62260 [Protein phosphatase 2C family protein] 0.337 -0.010
41 255406_at AT4G03450 [Ankyrin repeat family protein] 0.331 -0.130
42 258982_at AT3G08870 LecRK-VI.1, L-type lectin receptor kinase VI.1 0.331 0.002
43 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.314 0.121
44 254275_at AT4G22670 AtHip1, HSP70-interacting protein 1, HIP1, HSP70-interacting protein 1, TPR11, tetratricopeptide repeat 11 0.306 0.336
45 265723_at AT2G32140 [transmembrane receptors] 0.304 -0.181
46 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 0.304 -0.429
47 258507_at AT3G06500 A/N-InvC, alkaline/neutral invertase C 0.301 0.180
48 250858_at AT5G04760 [Duplicated homeodomain-like superfamily protein] 0.297 -0.009
49 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.296 -0.299
50 264636_at AT1G65490 unknown 0.289 -0.009
51 254318_at AT4G22530 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.287 -0.301
52 266993_at AT2G39210 [Major facilitator superfamily protein] 0.280 -0.281
53 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.280 -0.001
54 261564_at AT1G01720 ANAC002, Arabidopsis NAC domain containing protein 2, ATAF1 0.277 0.018
55 266977_at AT2G39420 [alpha/beta-Hydrolases superfamily protein] 0.277 -0.301
56 255787_at AT2G33590 AtCRL1, CRL1, CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1 0.275 -0.030
57 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.273 0.025
58 254784_at AT4G12720 AtNUDT7, Arabidopsis thaliana Nudix hydrolase homolog 7, GFG1, GROWTH FACTOR GENE 1, NUDT7 0.264 -0.084
59 247351_at AT5G63790 ANAC102, NAC domain containing protein 102, NAC102, NAC domain containing protein 102 0.262 0.055
60 246631_at AT1G50740 [Transmembrane proteins 14C] 0.260 -0.298
61 254673_at AT4G18430 AtRABA1e, RAB GTPase homolog A1E, RABA1e, RAB GTPase homolog A1E 0.258 -0.528
62 259418_at AT1G02390 ATGPAT2, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 2, GPAT2, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 2 0.255 -0.277
63 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] 0.251 -0.080
64 267076_at AT2G41090 [Calcium-binding EF-hand family protein] 0.249 0.021
65 265728_at AT2G31990 [Exostosin family protein] 0.231 -0.647
66 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] 0.226 0.009
67 254573_at AT4G19420 [Pectinacetylesterase family protein] 0.224 -0.327
68 253284_at AT4G34150 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.222 -0.352
69 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.220 0.104
70 267490_at AT2G19130 [S-locus lectin protein kinase family protein] 0.219 -0.454
71 256529_at AT1G33260 [Protein kinase superfamily protein] 0.217 -0.103
72 267008_at AT2G39350 ABCG1, ATP-binding cassette G1 0.217 -0.213
73 245731_at AT1G73500 ATMKK9, MKK9, MAP kinase kinase 9 0.214 0.187
74 262254_at AT1G53920 GLIP5, GDSL-motif lipase 5 0.212 -0.208
75 248959_at AT5G45630 unknown 0.212 -0.067
76 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.211 -0.340
77 256060_at AT1G07050 [CCT motif family protein] -0.979 -0.055
78 248744_at AT5G48250 BBX8, B-box domain protein 8 -0.658 -0.024
79 256602_at AT3G28310 unknown -0.611 0.088
80 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.592 -0.078
81 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 -0.564 0.019
82 256631_at AT3G28320 unknown -0.560 -0.047
83 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.556 0.187
84 253322_at AT4G33980 unknown -0.521 0.252
85 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.508 0.207
86 247867_at AT5G57630 CIPK21, CBL-interacting protein kinase 21, SnRK3.4, SNF1-RELATED PROTEIN KINASE 3.4 -0.506 -0.416
87 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 -0.479 0.154
88 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.478 0.583
89 259595_at AT1G28050 BBX13, B-box domain protein 13 -0.462 0.047
90 250194_at AT5G14550 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.451 -0.093
91 246525_at AT5G15840 BBX1, B-box domain protein 1, CO, CONSTANS, FG -0.440 -0.010
92 267280_at AT2G19450 ABX45, AS11, ATDGAT, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, AtDGAT1, DGAT1, acyl-CoA:diacylglycerol acyltransferase 1, RDS1, TAG1, TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1 -0.438 0.069
93 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.422 -0.392
94 247525_at AT5G61380 APRR1, AtTOC1, TIMING OF CAB EXPRESSION 1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TOC1, TIMING OF CAB EXPRESSION 1 -0.422 0.016
95 251753_at AT3G55760 unknown -0.421 0.155
96 262892_at AT1G79440 ALDH5F1, aldehyde dehydrogenase 5F1, ENF1, ENLARGED FIL EXPRESSION DOMAIN 1, SSADH, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, SSADH1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1 -0.395 -0.021
97 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 -0.383 0.292
98 266839_at AT2G25930 ELF3, EARLY FLOWERING 3, PYK20 -0.357 -0.041
99 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.356 -0.152
100 249053_at AT5G44440 [FAD-binding Berberine family protein] -0.354 -0.427
101 247786_at AT5G58600 PMR5, POWDERY MILDEW RESISTANT 5, TBL44, TRICHOME BIREFRINGENCE-LIKE 44 -0.352 0.212
102 261203_at AT1G12845 unknown -0.351 -0.280
103 247216_at AT5G64860 DPE1, disproportionating enzyme -0.349 0.011
104 255070_at AT4G09020 ATISA3, ISA3, isoamylase 3 -0.346 -0.149
105 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.341 -0.256
106 254645_at AT4G18520 SEL1, SEEDLING LETHAL 1 -0.337 0.554
107 260636_at AT1G62430 ATCDS1, CDP-diacylglycerol synthase 1, CDS1, CDP-diacylglycerol synthase 1 -0.325 -0.045
108 247348_at AT5G63810 AtBGAL10, Arabidopsis thaliana beta-galactosidase 10, BGAL10, beta-galactosidase 10 -0.315 0.574
109 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 -0.306 -0.001
110 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 -0.306 0.088
111 249869_at AT5G23050 AAE17, acyl-activating enzyme 17 -0.305 0.132
112 266225_at AT2G28900 ATOEP16-1, outer plastid envelope protein 16-1, ATOEP16-L, OUTER PLASTID ENVELOPE PROTEIN 16-L, OEP16, outer envelope protein 16, OEP16-1, outer plastid envelope protein 16-1 -0.300 0.248
113 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 -0.299 -0.395
114 264211_at AT1G22770 FB, GI, GIGANTEA -0.297 -0.208
115 248888_at AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 -0.290 0.021
116 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.284 0.358
117 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.282 -0.635
118 265078_at AT1G55500 ECT4, evolutionarily conserved C-terminal region 4 -0.280 0.203
119 258409_at AT3G17640 [Leucine-rich repeat (LRR) family protein] -0.273 -0.005
120 266439_s_at AT2G43200 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.272 0.137
121 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 -0.270 0.182
122 248502_at AT5G50450 [HCP-like superfamily protein with MYND-type zinc finger] -0.266 -0.069
123 253351_at AT4G33700 unknown -0.259 0.331
124 262784_at AT1G10760 GWD, GWD1, SEX1, STARCH EXCESS 1, SOP, SOP1 -0.253 0.057
125 250216_at AT5G14090 AtLAZY1, LAZY1, LAZY 1 -0.250 -0.130
126 254803_at AT4G13100 [RING/U-box superfamily protein] -0.250 0.010
127 259014_at AT3G07320 [O-Glycosyl hydrolases family 17 protein] -0.249 0.129
128 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 -0.248 -0.067
129 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 -0.248 -0.369
130 251432_at AT3G59820 AtLETM1, LETM1, leucine zipper-EF-hand-containing transmembrane protein 1 -0.248 0.412
131 259600_at AT1G35220 unknown -0.247 -0.009
132 251494_at AT3G59350 [Protein kinase superfamily protein] -0.244 -0.079
133 253421_at AT4G32340 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.243 0.050
134 246483_at AT5G16000 AtNIK1, NIK1, NSP-interacting kinase 1 -0.241 0.293
135 247744_at AT5G59020 unknown -0.240 0.049
136 257487_at AT1G71850 [Ubiquitin carboxyl-terminal hydrolase family protein] -0.239 0.628
137 246516_at AT5G15740 [O-fucosyltransferase family protein] -0.238 0.129
138 258719_at AT3G09540 [Pectin lyase-like superfamily protein] -0.238 -0.023
139 259303_at AT3G05130 unknown -0.237 0.550
140 255931_at AT1G12710 AtPP2-A12, phloem protein 2-A12, PP2-A12, phloem protein 2-A12 -0.237 -0.282
141 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 -0.235 0.106
142 246002_at AT5G20740 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.233 -0.055
143 247100_at AT5G66520 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.231 0.035
144 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 -0.230 -0.514
145 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.230 -0.121
146 256822_at AT3G22190 IQD5, IQ-domain 5 -0.229 0.051
147 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 -0.225 -0.057
148 254430_at AT4G20820 [FAD-binding Berberine family protein] -0.222 -0.245
149 266598_at AT2G46110 KPHMT1, ketopantoate hydroxymethyltransferase 1, PANB1 -0.220 0.320
150 263912_at AT2G36390 BE3, BRANCHING ENZYME 3, SBE2.1, starch branching enzyme 2.1 -0.217 0.155
151 263495_at AT2G42530 COR15B, cold regulated 15b -0.216 -0.020