4.0:Information of module
downy mildew cotyledons early stage
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 2.604e-08
GO:0044710 single-organism metabolic process BP 2.978e-08
GO:0009813 flavonoid biosynthetic process BP 9.756e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 2.426e-07
GO:0042221 response to chemical BP 4.417e-07
GO:0050896 response to stimulus BP 5.414e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
downy mildew cotyledons early stage		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.361 -0.322
2 254243_at AT4G23210 CRK13, cysteine-rich RLK (RECEPTOR-like protein kinase) 13 0.313 -0.435
3 257262_at AT3G21890 BBX31, B-box domain protein 31 0.296 -0.318
4 246968_at AT5G24870 [RING/U-box superfamily protein] 0.274 0.292
5 246620_at AT5G36220 CYP81D1, cytochrome P450, family 81, subfamily D, polypeptide 1, CYP91A1, CYTOCHROME P450 91A1 0.260 -0.704
6 247604_at AT5G60950 COBL5, COBRA-like protein 5 precursor 0.257 -0.432
7 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.236 0.510
8 252993_at AT4G38540 [FAD/NAD(P)-binding oxidoreductase family protein] 0.232 1.036
9 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 0.230 0.079
10 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.230 0.714
11 252896_at AT4G39480 CYP96A9, cytochrome P450, family 96, subfamily A, polypeptide 9 0.207 -0.284
12 260770_at AT1G49200 [RING/U-box superfamily protein] 0.205 -1.192
13 259520_at AT1G12320 unknown 0.205 -0.747
14 265931_at AT2G18520 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.201 0.287
15 252677_at AT3G44320 AtNIT3, NITRILASE 3, NIT3, nitrilase 3 0.199 0.062
16 246282_at AT4G36580 [AAA-type ATPase family protein] 0.197 0.636
17 259348_at AT3G03770 [Leucine-rich repeat protein kinase family protein] 0.192 -0.501
18 254543_at AT4G19810 ChiC, class V chitinase 0.191 0.558
19 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.188 -0.319
20 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] 0.188 0.077
21 259399_at AT1G17710 AtPEPC1, Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, PEPC1, phosphoethanolamine/phosphocholine phosphatase 1 0.187 -0.326
22 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 0.186 -1.004
23 251896_at AT3G54390 [sequence-specific DNA binding transcription factors] 0.185 -0.656
24 261023_at AT1G12200 FMO, flavin monooxygenase 0.183 -0.689
25 266372_at AT2G41310 ARR8, RESPONSE REGULATOR 8, ATRR3, response regulator 3, RR3, response regulator 3 0.181 0.509
26 261585_at AT1G01010 ANAC001, NAC domain containing protein 1, NAC001, NAC domain containing protein 1 0.179 -0.186
27 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 0.178 -0.286
28 255957_at AT1G22160 unknown 0.177 0.683
29 262464_at AT1G50280 [Phototropic-responsive NPH3 family protein] 0.174 -0.164
30 255310_at AT4G04955 ALN, allantoinase, ATALN, allantoinase 0.173 -0.212
31 254430_at AT4G20820 [FAD-binding Berberine family protein] 0.173 -0.589
32 245855_at AT5G13550 SULTR4;1, sulfate transporter 4.1 0.173 -0.415
33 251472_at AT3G59580 NLP9, NIN-like protein 9 0.173 -1.045
34 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 0.172 -0.591
35 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.170 0.504
36 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.170 -0.720
37 245885_at AT5G09440 EXL4, EXORDIUM like 4 0.169 0.210
38 246133_at AT5G20960 AAO1, aldehyde oxidase 1, AO1, aldehyde oxidase 1, AOalpha, aldehyde oxidase alpha, AT-AO1, ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, ATAO, AtAO1, Arabidopsis thaliana aldehyde oxidase 1 0.168 0.254
39 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] 0.168 0.300
40 261168_at AT1G04945 [HIT-type Zinc finger family protein] 0.166 0.191
41 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.165 0.777
42 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.163 0.519
43 259327_at AT3G16460 JAL34, jacalin-related lectin 34 0.162 0.820
44 264271_at AT1G60270 BGLU6, beta glucosidase 6 0.162 -0.728
45 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.158 -0.341
46 252134_at AT3G50910 unknown 0.158 1.215
47 251292_at AT3G61920 unknown 0.157 -0.636
48 259503_at AT1G15870 [Mitochondrial glycoprotein family protein] 0.156 0.240
49 253048_at AT4G37560 [Acetamidase/Formamidase family protein] 0.154 -0.534
50 246966_at AT5G24850 CRY3, cryptochrome 3 0.149 0.566
51 258009_at AT3G19440 [Pseudouridine synthase family protein] 0.148 -0.045
52 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.146 0.627
53 261804_at AT1G30530 UGT78D1, UDP-glucosyl transferase 78D1 0.146 0.339
54 263918_at AT2G36590 ATPROT3, PROLINE TRANSPORTER 3, ProT3, proline transporter 3 0.144 0.491
55 259746_at AT1G71060 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.144 -0.440
56 253382_at AT4G33040 [Thioredoxin superfamily protein] 0.144 0.033
57 248961_at AT5G45650 [subtilase family protein] 0.143 1.163
58 265433_at AT2G20950 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.143 -0.517
59 252736_at AT3G43210 ATNACK2, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, NACK2, NPK1-ACTIVATING KINESIN 2, TES, TETRASPORE 0.142 -0.803
60 246120_at AT5G20360 Phox3, Phox3 0.141 -0.489
61 261106_at AT1G62990 IXR11, KNAT7, KNOTTED-like homeobox of Arabidopsis thaliana 7 0.141 -0.826
62 256981_at AT3G13380 BRL3, BRI1-like 3 0.139 -0.866
63 248939_at AT5G45790 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.139 -0.677
64 262480_at AT1G11340 [S-locus lectin protein kinase family protein] 0.138 -0.786
65 253940_at AT4G26950 unknown 0.137 -1.103
66 255622_at AT4G01070 GT72B1, UGT72B1, UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1 0.133 0.683
67 256529_at AT1G33260 [Protein kinase superfamily protein] 0.130 -1.104
68 264806_at AT1G08610 [Pentatricopeptide repeat (PPR) superfamily protein] 0.129 -0.426
69 264444_at AT1G27360 SPL11, squamosa promoter-like 11 0.125 0.282
70 246516_at AT5G15740 [O-fucosyltransferase family protein] 0.125 0.814
71 266623_at AT2G35390 [Phosphoribosyltransferase family protein] 0.123 0.125
72 248065_at AT5G55580 [Mitochondrial transcription termination factor family protein] 0.122 0.718
73 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.122 -0.398
74 267096_at AT2G38180 [SGNH hydrolase-type esterase superfamily protein] 0.122 -0.027
75 247718_at AT5G59310 LTP4, lipid transfer protein 4 -0.836 0.168
76 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A -0.743 -0.346
77 267459_at AT2G33850 unknown -0.659 -1.190
78 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.532 0.349
79 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 -0.529 0.466
80 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.459 -0.464
81 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B -0.438 0.521
82 248509_at AT5G50335 unknown -0.434 -0.376
83 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 -0.432 -0.635
84 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] -0.408 0.002
85 247713_at AT5G59330 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.401 -0.820
86 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 -0.374 -0.145
87 254074_at AT4G25490 ATCBF1, CBF1, C-repeat/DRE binding factor 1, DREB1B, DRE BINDING PROTEIN 1B -0.360 -0.082
88 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] -0.357 0.218
89 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 -0.356 -0.162
90 248164_at AT5G54490 PBP1, pinoid-binding protein 1 -0.330 -0.355
91 245891_at AT5G09220 AAP2, amino acid permease 2 -0.329 -0.611
92 252193_at AT3G50060 MYB77, myb domain protein 77 -0.325 -0.077
93 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.324 0.617
94 251928_at AT3G53980 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.324 0.121
95 246215_at AT4G37180 [Homeodomain-like superfamily protein] -0.320 0.922
96 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 -0.318 0.849
97 266503_at AT2G47780 [Rubber elongation factor protein (REF)] -0.307 1.316
98 254687_at AT4G13770 CYP83A1, cytochrome P450, family 83, subfamily A, polypeptide 1, REF2, REDUCED EPIDERMAL FLUORESCENCE 2 -0.304 -0.237
99 250277_at AT5G12940 [Leucine-rich repeat (LRR) family protein] -0.300 0.194
100 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.297 0.713
101 257900_at AT3G28420 [Putative membrane lipoprotein] -0.296 -0.059
102 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.290 0.440
103 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 -0.284 -0.444
104 248163_at AT5G54510 DFL1, DWARF IN LIGHT 1, GH3.6, Gretchen Hagen3.6 -0.281 0.730
105 264211_at AT1G22770 FB, GI, GIGANTEA -0.277 -0.426
106 250098_at AT5G17350 unknown -0.277 -0.307
107 255064_at AT4G08950 EXO, EXORDIUM -0.272 1.041
108 256503_at AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 -0.270 0.811
109 255568_at AT4G01250 AtWRKY22, WRKY22 -0.269 0.135
110 258939_at AT3G10020 unknown -0.268 0.237
111 263265_at AT2G38820 unknown -0.260 -0.640
112 266831_at AT2G22830 SQE2, squalene epoxidase 2 -0.259 0.308
113 267393_at AT2G44500 [O-fucosyltransferase family protein] -0.257 0.445
114 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 -0.257 0.891
115 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.255 0.031
116 248710_at AT5G48480 [Lactoylglutathione lyase / glyoxalase I family protein] -0.254 0.142
117 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] -0.252 0.232
118 260742_at AT1G15050 IAA34, indole-3-acetic acid inducible 34 -0.249 -0.561
119 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 -0.248 -0.701
120 261203_at AT1G12845 unknown -0.244 0.042
121 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.241 -0.291
122 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -0.239 -0.914
123 255433_at AT4G03210 XTH9, xyloglucan endotransglucosylase/hydrolase 9 -0.238 1.312
124 263799_at AT2G24550 unknown -0.231 0.949
125 259979_at AT1G76600 unknown -0.229 -0.501
126 255285_at AT4G04630 unknown -0.226 0.183
127 258376_at AT3G17680 [Kinase interacting (KIP1-like) family protein] -0.225 0.738
128 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.224 0.027
129 247878_at AT5G57760 unknown -0.224 -0.150
130 252050_at AT3G52550 unknown -0.223 -0.377
131 261745_at AT1G08500 AtENODL18, ENODL18, early nodulin-like protein 18 -0.222 0.597
132 259015_at AT3G07350 unknown -0.219 -0.384
133 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 -0.219 0.513
134 258275_at AT3G15760 unknown -0.214 -0.293
135 248895_at AT5G46330 FLS2, FLAGELLIN-SENSITIVE 2 -0.214 0.190
136 254377_at AT4G21650 [Subtilase family protein] -0.213 -1.096
137 258641_at AT3G08030 unknown -0.208 0.936
138 257076_at AT3G19680 unknown -0.208 0.421
139 257679_at AT3G20470 ATGRP-5, ATGRP5, GRP-5, GLYCINE-RICH PROTEIN 5, GRP5, glycine-rich protein 5 -0.198 -0.035
140 267529_at AT2G45490 AtAUR3, ataurora3, AUR3, ataurora3 -0.191 -0.042
141 247597_at AT5G60860 AtRABA1f, RAB GTPase homolog A1F, RABA1f, RAB GTPase homolog A1F -0.189 -0.073
142 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] -0.186 -0.024
143 246251_at AT4G37220 [Cold acclimation protein WCOR413 family] -0.181 -0.828
144 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A -0.178 -0.446
145 267230_at AT2G44080 ARL, ARGOS-like -0.177 0.620
146 260944_at AT1G45130 AtBGAL5, BGAL5, beta-galactosidase 5 -0.177 0.926
147 249117_at AT5G43840 AT-HSFA6A, heat shock transcription factor A6A, HSFA6A, heat shock transcription factor A6A -0.175 -0.261