4.0:Information of module
downy mildew cotyledons early stage
In comparison with dark-hs help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 2.604e-08
GO:0044710 single-organism metabolic process BP 2.978e-08
GO:0009813 flavonoid biosynthetic process BP 9.756e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 2.426e-07
GO:0042221 response to chemical BP 4.417e-07
GO:0050896 response to stimulus BP 5.414e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
downy mildew cotyledons early stage		 Log2 signal ratio
dark-hs
1 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.361 -0.205
2 254243_at AT4G23210 CRK13, cysteine-rich RLK (RECEPTOR-like protein kinase) 13 0.313 0.080
3 257262_at AT3G21890 BBX31, B-box domain protein 31 0.296 0.007
4 246968_at AT5G24870 [RING/U-box superfamily protein] 0.274 -0.113
5 246620_at AT5G36220 CYP81D1, cytochrome P450, family 81, subfamily D, polypeptide 1, CYP91A1, CYTOCHROME P450 91A1 0.260 0.052
6 247604_at AT5G60950 COBL5, COBRA-like protein 5 precursor 0.257 -0.331
7 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.236 -0.107
8 252993_at AT4G38540 [FAD/NAD(P)-binding oxidoreductase family protein] 0.232 -0.015
9 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 0.230 -0.105
10 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.230 0.027
11 252896_at AT4G39480 CYP96A9, cytochrome P450, family 96, subfamily A, polypeptide 9 0.207 0.040
12 260770_at AT1G49200 [RING/U-box superfamily protein] 0.205 -0.049
13 259520_at AT1G12320 unknown 0.205 -0.047
14 265931_at AT2G18520 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.201 0.081
15 252677_at AT3G44320 AtNIT3, NITRILASE 3, NIT3, nitrilase 3 0.199 0.040
16 246282_at AT4G36580 [AAA-type ATPase family protein] 0.197 -0.182
17 259348_at AT3G03770 [Leucine-rich repeat protein kinase family protein] 0.192 -0.054
18 254543_at AT4G19810 ChiC, class V chitinase 0.191 -0.118
19 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.188 -0.121
20 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] 0.188 -0.049
21 259399_at AT1G17710 AtPEPC1, Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, PEPC1, phosphoethanolamine/phosphocholine phosphatase 1 0.187 0.344
22 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 0.186 0.053
23 251896_at AT3G54390 [sequence-specific DNA binding transcription factors] 0.185 0.040
24 261023_at AT1G12200 FMO, flavin monooxygenase 0.183 0.074
25 266372_at AT2G41310 ARR8, RESPONSE REGULATOR 8, ATRR3, response regulator 3, RR3, response regulator 3 0.181 -0.394
26 261585_at AT1G01010 ANAC001, NAC domain containing protein 1, NAC001, NAC domain containing protein 1 0.179 0.049
27 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 0.178 -0.055
28 255957_at AT1G22160 unknown 0.177 0.027
29 262464_at AT1G50280 [Phototropic-responsive NPH3 family protein] 0.174 -0.041
30 255310_at AT4G04955 ALN, allantoinase, ATALN, allantoinase 0.173 0.123
31 254430_at AT4G20820 [FAD-binding Berberine family protein] 0.173 -0.054
32 245855_at AT5G13550 SULTR4;1, sulfate transporter 4.1 0.173 0.051
33 251472_at AT3G59580 NLP9, NIN-like protein 9 0.173 0.003
34 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 0.172 -0.078
35 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.170 0.126
36 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.170 0.240
37 245885_at AT5G09440 EXL4, EXORDIUM like 4 0.169 0.068
38 246133_at AT5G20960 AAO1, aldehyde oxidase 1, AO1, aldehyde oxidase 1, AOalpha, aldehyde oxidase alpha, AT-AO1, ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, ATAO, AtAO1, Arabidopsis thaliana aldehyde oxidase 1 0.168 0.004
39 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] 0.168 -0.021
40 261168_at AT1G04945 [HIT-type Zinc finger family protein] 0.166 -0.194
41 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.165 -0.027
42 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.163 -0.176
43 259327_at AT3G16460 JAL34, jacalin-related lectin 34 0.162 -0.006
44 264271_at AT1G60270 BGLU6, beta glucosidase 6 0.162 0.113
45 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.158 0.129
46 252134_at AT3G50910 unknown 0.158 0.085
47 251292_at AT3G61920 unknown 0.157 0.228
48 259503_at AT1G15870 [Mitochondrial glycoprotein family protein] 0.156 0.033
49 253048_at AT4G37560 [Acetamidase/Formamidase family protein] 0.154 0.076
50 246966_at AT5G24850 CRY3, cryptochrome 3 0.149 -0.015
51 258009_at AT3G19440 [Pseudouridine synthase family protein] 0.148 0.019
52 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.146 0.002
53 261804_at AT1G30530 UGT78D1, UDP-glucosyl transferase 78D1 0.146 -0.039
54 263918_at AT2G36590 ATPROT3, PROLINE TRANSPORTER 3, ProT3, proline transporter 3 0.144 -0.039
55 259746_at AT1G71060 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.144 -0.039
56 253382_at AT4G33040 [Thioredoxin superfamily protein] 0.144 0.078
57 248961_at AT5G45650 [subtilase family protein] 0.143 0.067
58 265433_at AT2G20950 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.143 -0.019
59 252736_at AT3G43210 ATNACK2, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, NACK2, NPK1-ACTIVATING KINESIN 2, TES, TETRASPORE 0.142 0.030
60 246120_at AT5G20360 Phox3, Phox3 0.141 -0.221
61 261106_at AT1G62990 IXR11, KNAT7, KNOTTED-like homeobox of Arabidopsis thaliana 7 0.141 -0.003
62 256981_at AT3G13380 BRL3, BRI1-like 3 0.139 -0.119
63 248939_at AT5G45790 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.139 0.107
64 262480_at AT1G11340 [S-locus lectin protein kinase family protein] 0.138 0.063
65 253940_at AT4G26950 unknown 0.137 0.039
66 255622_at AT4G01070 GT72B1, UGT72B1, UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1 0.133 0.005
67 256529_at AT1G33260 [Protein kinase superfamily protein] 0.130 -0.046
68 264806_at AT1G08610 [Pentatricopeptide repeat (PPR) superfamily protein] 0.129 -0.033
69 264444_at AT1G27360 SPL11, squamosa promoter-like 11 0.125 -0.065
70 246516_at AT5G15740 [O-fucosyltransferase family protein] 0.125 0.001
71 266623_at AT2G35390 [Phosphoribosyltransferase family protein] 0.123 0.159
72 248065_at AT5G55580 [Mitochondrial transcription termination factor family protein] 0.122 0.005
73 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.122 0.032
74 267096_at AT2G38180 [SGNH hydrolase-type esterase superfamily protein] 0.122 -0.005
75 247718_at AT5G59310 LTP4, lipid transfer protein 4 -0.836 0.049
76 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A -0.743 0.090
77 267459_at AT2G33850 unknown -0.659 0.074
78 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.532 0.033
79 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 -0.529 0.130
80 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.459 -0.377
81 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B -0.438 -0.043
82 248509_at AT5G50335 unknown -0.434 0.023
83 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 -0.432 0.240
84 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] -0.408 0.422
85 247713_at AT5G59330 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.401 -0.047
86 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 -0.374 0.423
87 254074_at AT4G25490 ATCBF1, CBF1, C-repeat/DRE binding factor 1, DREB1B, DRE BINDING PROTEIN 1B -0.360 0.117
88 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] -0.357 0.014
89 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 -0.356 -0.024
90 248164_at AT5G54490 PBP1, pinoid-binding protein 1 -0.330 0.134
91 245891_at AT5G09220 AAP2, amino acid permease 2 -0.329 0.011
92 252193_at AT3G50060 MYB77, myb domain protein 77 -0.325 0.232
93 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.324 0.050
94 251928_at AT3G53980 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.324 0.073
95 246215_at AT4G37180 [Homeodomain-like superfamily protein] -0.320 -0.001
96 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 -0.318 -0.256
97 266503_at AT2G47780 [Rubber elongation factor protein (REF)] -0.307 0.079
98 254687_at AT4G13770 CYP83A1, cytochrome P450, family 83, subfamily A, polypeptide 1, REF2, REDUCED EPIDERMAL FLUORESCENCE 2 -0.304 -0.056
99 250277_at AT5G12940 [Leucine-rich repeat (LRR) family protein] -0.300 -0.143
100 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.297 0.008
101 257900_at AT3G28420 [Putative membrane lipoprotein] -0.296 0.061
102 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.290 -0.026
103 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 -0.284 0.197
104 248163_at AT5G54510 DFL1, DWARF IN LIGHT 1, GH3.6, Gretchen Hagen3.6 -0.281 -0.014
105 264211_at AT1G22770 FB, GI, GIGANTEA -0.277 0.338
106 250098_at AT5G17350 unknown -0.277 0.222
107 255064_at AT4G08950 EXO, EXORDIUM -0.272 0.035
108 256503_at AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 -0.270 0.004
109 255568_at AT4G01250 AtWRKY22, WRKY22 -0.269 -0.227
110 258939_at AT3G10020 unknown -0.268 0.648
111 263265_at AT2G38820 unknown -0.260 0.191
112 266831_at AT2G22830 SQE2, squalene epoxidase 2 -0.259 0.069
113 267393_at AT2G44500 [O-fucosyltransferase family protein] -0.257 0.032
114 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 -0.257 -0.142
115 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.255 0.078
116 248710_at AT5G48480 [Lactoylglutathione lyase / glyoxalase I family protein] -0.254 0.112
117 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] -0.252 -0.204
118 260742_at AT1G15050 IAA34, indole-3-acetic acid inducible 34 -0.249 -0.017
119 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 -0.248 0.169
120 261203_at AT1G12845 unknown -0.244 -0.053
121 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.241 -0.039
122 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -0.239 0.282
123 255433_at AT4G03210 XTH9, xyloglucan endotransglucosylase/hydrolase 9 -0.238 0.029
124 263799_at AT2G24550 unknown -0.231 -0.087
125 259979_at AT1G76600 unknown -0.229 -0.203
126 255285_at AT4G04630 unknown -0.226 -0.150
127 258376_at AT3G17680 [Kinase interacting (KIP1-like) family protein] -0.225 0.025
128 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.224 0.110
129 247878_at AT5G57760 unknown -0.224 -0.181
130 252050_at AT3G52550 unknown -0.223 0.112
131 261745_at AT1G08500 AtENODL18, ENODL18, early nodulin-like protein 18 -0.222 -0.043
132 259015_at AT3G07350 unknown -0.219 0.156
133 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 -0.219 0.052
134 258275_at AT3G15760 unknown -0.214 0.238
135 248895_at AT5G46330 FLS2, FLAGELLIN-SENSITIVE 2 -0.214 0.030
136 254377_at AT4G21650 [Subtilase family protein] -0.213 -0.006
137 258641_at AT3G08030 unknown -0.208 -0.020
138 257076_at AT3G19680 unknown -0.208 0.100
139 257679_at AT3G20470 ATGRP-5, ATGRP5, GRP-5, GLYCINE-RICH PROTEIN 5, GRP5, glycine-rich protein 5 -0.198 0.044
140 267529_at AT2G45490 AtAUR3, ataurora3, AUR3, ataurora3 -0.191 0.135
141 247597_at AT5G60860 AtRABA1f, RAB GTPase homolog A1F, RABA1f, RAB GTPase homolog A1F -0.189 0.097
142 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] -0.186 0.113
143 246251_at AT4G37220 [Cold acclimation protein WCOR413 family] -0.181 0.151
144 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A -0.178 0.168
145 267230_at AT2G44080 ARL, ARGOS-like -0.177 0.160
146 260944_at AT1G45130 AtBGAL5, BGAL5, beta-galactosidase 5 -0.177 -0.026
147 249117_at AT5G43840 AT-HSFA6A, heat shock transcription factor A6A, HSFA6A, heat shock transcription factor A6A -0.175 0.097