4.0:Information of module
coi1-2 JA
In comparison with Methyl Jasmonate 3 h  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 2.760e-29
GO:0050896 response to stimulus BP 6.472e-27
GO:0042221 response to chemical BP 7.442e-27
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009753 response to jasmonic acid BP 4.193e-21
GO:0044281 small molecule metabolic process BP 1.769e-20
GO:0009611 response to wounding BP 5.139e-20
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
coi1-2 JA		 Log2 signal ratio
Methyl Jasmonate 3 h
1 248322_at AT5G52760 [Copper transport protein family] 0.888 -0.069
2 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.770 -0.007
3 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.732 -0.207
4 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 0.670 0.176
5 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 0.654 -0.168
6 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.638 0.004
7 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.612 -0.277
8 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.604 -0.222
9 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.598 -0.163
10 261005_at AT1G26420 [FAD-binding Berberine family protein] 0.585 -0.058
11 254243_at AT4G23210 CRK13, cysteine-rich RLK (RECEPTOR-like protein kinase) 13 0.572 0.008
12 248790_at AT5G47450 ATTIP2;3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, TIP2;3, tonoplast intrinsic protein 2;3 0.561 -0.167
13 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.545 -0.381
14 258606_at AT3G02840 [ARM repeat superfamily protein] 0.542 -0.015
15 251621_at AT3G57700 [Protein kinase superfamily protein] 0.535 -0.133
16 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.533 -0.130
17 257540_at AT3G21520 AtDMP1, Arabidopsis thaliana DUF679 domain membrane protein 1, DMP1, DUF679 domain membrane protein 1 0.529 -0.017
18 251054_at AT5G01540 LecRK-VI.2, L-type lectin receptor kinase-VI.2, LECRKA4.1, lectin receptor kinase a4.1 0.492 -0.210
19 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.487 -0.004
20 265597_at AT2G20142 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.478 -0.106
21 267384_at AT2G44370 [Cysteine/Histidine-rich C1 domain family protein] 0.473 -0.126
22 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.461 0.138
23 246251_at AT4G37220 [Cold acclimation protein WCOR413 family] 0.448 0.011
24 255340_at AT4G04490 CRK36, cysteine-rich RLK (RECEPTOR-like protein kinase) 36 0.445 -0.063
25 264636_at AT1G65490 unknown 0.444 -0.517
26 264680_at AT1G65510 unknown 0.441 -0.123
27 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.439 -0.347
28 245692_at AT5G04150 BHLH101 0.439 -0.140
29 261545_at AT1G63530 unknown 0.426 -0.076
30 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.423 -0.535
31 262085_at AT1G56060 unknown 0.414 -0.026
32 248934_at AT5G46080 [Protein kinase superfamily protein] 0.413 -0.111
33 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 0.403 -0.779
34 250182_at AT5G14470 AtGALK2, GALK2, galactokinase 2 0.402 0.011
35 265853_at AT2G42360 [RING/U-box superfamily protein] 0.402 -0.030
36 259036_at AT3G09220 LAC7, laccase 7 0.386 -0.139
37 257061_at AT3G18250 [Putative membrane lipoprotein] 0.384 -0.039
38 249278_at AT5G41900 [alpha/beta-Hydrolases superfamily protein] 0.378 -0.078
39 250230_at AT5G13900 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.374 -0.216
40 264866_at AT1G24140 [Matrixin family protein] 0.372 0.103
41 250165_at AT5G15290 CASP5, Casparian strip membrane domain protein 5 0.372 -0.014
42 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.362 0.013
43 249289_at AT5G41040 ASFT, aliphatic suberin feruloyl-transferase, HHT, hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase, RWP1, REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 0.360 -0.086
44 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] 0.354 -0.275
45 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.354 -0.028
46 247691_at AT5G59720 HSP18.2, heat shock protein 18.2 0.352 0.113
47 245181_at AT5G12420 [O-acyltransferase (WSD1-like) family protein] 0.350 -0.083
48 254193_at AT4G23870 unknown 0.339 -0.170
49 251298_at AT3G62040 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.339 -0.183
50 250157_at AT5G15180 [Peroxidase superfamily protein] 0.334 -0.121
51 245148_at AT2G45220 PME17, pectin methylesterase 17 0.330 -0.208
52 250940_at AT5G03310 SAUR44, SMALL AUXIN UPREGULATED RNA 44 0.325 0.005
53 254543_at AT4G19810 ChiC, class V chitinase 0.324 -0.195
54 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 0.321 -0.195
55 267121_at AT2G23540 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.320 -0.051
56 250446_at AT5G10770 [Eukaryotic aspartyl protease family protein] 0.316 -0.227
57 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 0.316 -0.032
58 260239_at AT1G74360 [Leucine-rich repeat protein kinase family protein] 0.314 -0.044
59 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 0.313 -0.013
60 248496_at AT5G50790 AtSWEET10, SWEET10 0.309 -0.018
61 259439_at AT1G01480 ACS2, 1-amino-cyclopropane-1-carboxylate synthase 2, AT-ACC2 0.307 -0.037
62 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] 0.306 0.043
63 267385_at AT2G44380 [Cysteine/Histidine-rich C1 domain family protein] 0.305 -0.362
64 248176_at AT5G54650 ATFH5, FORMIN HOMOLOGY 5, Fh5, formin homology5 0.300 0.052
65 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] 0.298 -0.176
66 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.296 0.032
67 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 0.294 -0.150
68 265499_at AT2G15480 UGT73B5, UDP-glucosyl transferase 73B5 0.293 0.048
69 263411_at AT2G28710 [C2H2-type zinc finger family protein] 0.290 -0.009
70 252209_at AT3G50400 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.287 -0.102
71 264223_s_at AT3G16030 CES101, CALLUS EXPRESSION OF RBCS 101, RFO3, RESISTANCE TO FUSARIUM OXYSPORUM 3 0.281 0.017
72 260303_at AT1G70520 ASG6, ALTERED SEED GERMINATION 6, CRK2, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 0.278 -0.142
73 256933_at AT3G22600 LTPG5, glycosylphosphatidylinositol-anchored lipid protein transfer 5 0.271 -0.082
74 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 0.268 -0.156
75 246858_at AT5G25930 [Protein kinase family protein with leucine-rich repeat domain] 0.265 0.233
76 252502_at AT3G46900 COPT2, copper transporter 2 0.260 -0.011
77 245412_at AT4G17280 [Auxin-responsive family protein] 0.257 -0.116
78 260770_at AT1G49200 [RING/U-box superfamily protein] 0.255 -0.397
79 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] -0.894 0.966
80 245531_at AT4G15100 scpl30, serine carboxypeptidase-like 30 -0.891 0.311
81 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 -0.874 0.732
82 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.831 1.337
83 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 -0.622 1.284
84 264396_at AT1G12050 AtFAH, FAH, fumarylacetoacetate hydrolase, SSCD1, short-day sensitive cell deathshort-day sensitive cell deathshort-day sensitive cell death 111 -0.581 0.040
85 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 -0.564 0.758
86 249675_at AT5G35940 [Mannose-binding lectin superfamily protein] -0.558 0.996
87 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 -0.548 1.038
88 263594_at AT2G01880 ATPAP7, PURPLE ACID PHOSPHATASE 7, PAP7, purple acid phosphatase 7 -0.518 0.437
89 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase -0.500 0.586
90 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A -0.493 0.821
91 254907_at AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -0.491 0.224
92 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] -0.483 0.153
93 246149_at AT5G19890 [Peroxidase superfamily protein] -0.479 0.091
94 264145_at AT1G79310 AtMC7, metacaspase 7, AtMCP2a, metacaspase 2a, MC7, metacaspase 7, MCP2a, metacaspase 2a -0.465 0.380
95 252618_at AT3G45140 ATLOX2, ARABIODOPSIS THALIANA LIPOXYGENASE 2, LOX2, lipoxygenase 2 -0.463 0.185
96 254150_at AT4G24350 [Phosphorylase superfamily protein] -0.462 0.692
97 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] -0.455 0.498
98 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 -0.445 1.290
99 265327_at AT2G18210 unknown -0.442 0.702
100 262698_at AT1G75960 [AMP-dependent synthetase and ligase family protein] -0.434 0.728
101 252114_at AT3G51450 [Calcium-dependent phosphotriesterase superfamily protein] -0.433 0.810
102 251480_at AT3G59710 [NAD(P)-binding Rossmann-fold superfamily protein] -0.423 0.679
103 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.416 0.327
104 249971_at AT5G19110 [Eukaryotic aspartyl protease family protein] -0.411 0.792
105 255786_at AT1G19670 ATCLH1, chlorophyllase 1, ATHCOR1, CORONATINE-INDUCED PROTEIN 1, CLH1, chlorophyllase 1, CORI1, CORONATINE-INDUCED PROTEIN 1 -0.404 0.898
106 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] -0.400 0.476
107 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 -0.397 0.494
108 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 -0.395 1.120
109 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 -0.395 1.178
110 266977_at AT2G39420 [alpha/beta-Hydrolases superfamily protein] -0.390 0.505
111 256489_at AT1G31550 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.386 0.788
112 266418_at AT2G38750 ANNAT4, annexin 4, AtANN4 -0.383 0.383
113 256751_at AT3G27170 ATCLC-B, CLC-B, chloride channel B -0.383 0.245
114 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] -0.381 0.499
115 259640_at AT1G52400 ATBG1, A. THALIANA BETA-GLUCOSIDASE 1, BGL1, BETA-GLUCOSIDASE HOMOLOG 1, BGLU18, beta glucosidase 18 -0.377 0.555
116 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.368 0.842
117 265955_at AT2G37280 ABCG33, ATP-binding cassette G33, ATPDR5, PLEIOTROPIC DRUG RESISTANCE 5, PDR5, pleiotropic drug resistance 5 -0.366 0.198
118 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 -0.351 0.644
119 250633_at AT5G07460 ATMSRA2, ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, PMSR2, peptidemethionine sulfoxide reductase 2 -0.348 0.351
120 254233_at AT4G23800 3xHMG-box2, 3xHigh Mobility Group-box2 -0.344 -0.009
121 257197_at AT3G23800 SBP3, selenium-binding protein 3 -0.335 0.103
122 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A -0.332 0.188
123 247213_at AT5G64900 ATPEP1, ARABIDOPSIS THALIANA PEPTIDE 1, PEP1, PEPTIDE 1, PROPEP1, precursor of peptide 1 -0.330 0.309
124 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.320 0.307
125 254361_at AT4G22212 [Arabidopsis defensin-like protein] -0.320 0.206
126 258571_at AT3G04420 anac048, NAC domain containing protein 48, NAC048, NAC domain containing protein 48 -0.320 0.045
127 265051_at AT1G52100 [Mannose-binding lectin superfamily protein] -0.318 0.059
128 266271_at AT2G29440 ATGSTU6, glutathione S-transferase tau 6, GST24, GLUTATHIONE S-TRANSFERASE 24, GSTU6, glutathione S-transferase tau 6 -0.316 0.549
129 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 -0.316 0.790
130 263120_at AT1G78490 CYP708A3, cytochrome P450, family 708, subfamily A, polypeptide 3 -0.312 0.356
131 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 -0.310 0.401
132 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 -0.308 0.062
133 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.304 0.462
134 260031_at AT1G68790 CRWN3, CROWDED NUCLEI 3, LINC3, LITTLE NUCLEI3 -0.296 0.020
135 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.293 0.064
136 251141_at AT5G01075 [Glycosyl hydrolase family 35 protein] -0.292 0.100
137 260541_at AT2G43530 [Scorpion toxin-like knottin superfamily protein] -0.292 0.499
138 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.287 0.611
139 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 -0.283 0.775
140 262608_at AT1G14120 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.282 0.929
141 250149_at AT5G14700 [NAD(P)-binding Rossmann-fold superfamily protein] -0.282 0.395
142 263972_at AT2G42760 unknown -0.281 0.385
143 257021_at AT3G19710 BCAT4, branched-chain aminotransferase4 -0.276 0.067
144 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B -0.270 0.833
145 264083_at AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 -0.266 0.235
146 252487_at AT3G46660 UGT76E12, UDP-glucosyl transferase 76E12 -0.265 0.342
147 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 -0.262 0.326
148 249567_at AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.261 0.184
149 255128_at AT4G08310 unknown -0.260 -0.053
150 247331_at AT5G63530 ATFP3, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, FP3, farnesylated protein 3 -0.255 0.052
151 266209_at AT2G27550 ATC, centroradialis -0.255 0.101
152 260205_at AT1G70700 JAZ9, JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY7 -0.255 0.909
153 266828_at AT2G22930 [UDP-Glycosyltransferase superfamily protein] -0.254 0.363
154 251466_at AT3G59340 unknown -0.254 0.557
155 255111_at AT4G08780 [Peroxidase superfamily protein] -0.253 0.062