4.0:Information of module
FAMA induced 4h
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0005982 starch metabolic process BP 2.269e-11
GO:0016143 S-glycoside metabolic process BP 4.115e-10
GO:0019757 glycosinolate metabolic process BP 4.115e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0071705 nitrogen compound transport BP 6.762e-16
GO:0006820 anion transport BP 2.837e-15
GO:1901698 response to nitrogen compound BP 1.577e-14
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
FAMA induced 4h		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 257247_at AT3G24140 FMA, FAMA 0.997 -0.758
2 263829_at AT2G40435 unknown 0.582 0.501
3 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 0.489 -0.122
4 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 0.429 -0.282
5 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.372 -0.052
6 260012_at AT1G67865 unknown 0.368 -1.064
7 266841_at AT2G26150 ATHSFA2, heat shock transcription factor A2, HSFA2, heat shock transcription factor A2 0.297 -0.485
8 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 0.289 -1.072
9 260248_at AT1G74310 ATHSP101, heat shock protein 101, HOT1, HSP101, heat shock protein 101 0.280 -0.359
10 250381_at AT5G11610 [Exostosin family protein] 0.248 -0.295
11 253971_at AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 0.236 -0.411
12 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 0.227 -1.022
13 251753_at AT3G55760 unknown 0.214 0.041
14 258702_at AT3G09730 unknown 0.212 -0.527
15 266320_at AT2G46640 TAC1, Tiller Angle Control 1 0.208 0.036
16 252661_at AT3G44450 unknown 0.207 1.058
17 263374_at AT2G20560 [DNAJ heat shock family protein] 0.206 0.263
18 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 0.197 -0.412
19 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.189 0.567
20 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 0.188 -0.902
21 261921_at AT1G65900 unknown 0.184 0.678
22 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 0.182 -0.698
23 247216_at AT5G64860 DPE1, disproportionating enzyme 0.174 0.168
24 259735_at AT1G64405 unknown 0.168 -0.501
25 253779_at AT4G28490 HAE, HAESA, RLK5, RECEPTOR-LIKE PROTEIN KINASE 5 0.167 -0.586
26 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.164 0.582
27 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] 0.161 -0.083
28 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 0.156 -0.404
29 245593_at AT4G14550 IAA14, indole-3-acetic acid inducible 14, SLR, SOLITARY ROOT 0.153 0.359
30 266707_at AT2G03310 unknown 0.151 -1.054
31 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.148 -0.444
32 260086_at AT1G63240 unknown 0.146 0.779
33 259081_at AT3G05030 ATNHX2, NHX2, sodium hydrogen exchanger 2 0.146 0.060
34 249645_at AT5G36910 THI2.2, thionin 2.2 0.146 0.273
35 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] 0.146 -0.463
36 256527_at AT1G66100 [Plant thionin] 0.139 -1.454
37 257832_at AT3G26740 CCL, CCR-like 0.138 -0.369
38 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 -0.637 1.417
39 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 -0.494 -0.232
40 263402_at AT2G04050 [MATE efflux family protein] -0.482 0.003
41 255934_at AT1G12740 CYP87A2, cytochrome P450, family 87, subfamily A, polypeptide 2 -0.459 -0.073
42 253998_at AT4G26010 [Peroxidase superfamily protein] -0.459 -0.029
43 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.431 -0.330
44 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 -0.395 -0.520
45 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.385 -0.528
46 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] -0.375 0.081
47 249459_at AT5G39580 [Peroxidase superfamily protein] -0.371 0.560
48 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] -0.359 -1.022
49 257774_at AT3G29250 AtSDR4, SDR4, short-chain dehydrogenase reductase 4 -0.359 0.405
50 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 -0.358 -0.781
51 256522_at AT1G66160 ATCMPG1, CMPG1, CYS, MET, PRO, and GLY protein 1 -0.354 0.423
52 266658_at AT2G25735 unknown -0.353 -0.331
53 246366_at AT1G51850 [Leucine-rich repeat protein kinase family protein] -0.347 -1.181
54 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -0.344 0.698
55 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 -0.340 1.750
56 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.327 0.586
57 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.299 0.827
58 252511_at AT3G46280 [protein kinase-related] -0.277 -0.066
59 245392_at AT4G15680 [Thioredoxin superfamily protein] -0.277 -0.177
60 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] -0.261 0.752
61 258935_at AT3G10120 unknown -0.261 -1.284
62 261951_at AT1G64490 [DEK, chromatin associated protein] -0.256 0.774
63 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] -0.255 0.373
64 256878_at AT3G26460 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.243 0.099
65 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 -0.237 0.224
66 249848_at AT5G23220 NIC3, nicotinamidase 3 -0.233 -0.266
67 263208_at AT1G10480 ZFP5, zinc finger protein 5 -0.229 -0.132
68 245505_at AT4G15690 [Thioredoxin superfamily protein] -0.226 -1.064
69 258100_at AT3G23550 [MATE efflux family protein] -0.224 -0.557
70 267409_at AT2G34910 unknown -0.220 1.098
71 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 -0.216 1.050
72 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 -0.216 0.813
73 254384_at AT4G21870 [HSP20-like chaperones superfamily protein] -0.215 0.769