4.0:Information of module
OXUPB1-2 elongation zone
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901701 cellular response to oxygen-containing c... BP 5.881e-07
GO:0071229 cellular response to acid chemical BP 2.963e-06
GO:0009612 response to mechanical stimulus BP 1.008e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006826 iron ion transport BP 4.114e-06
GO:0046916 cellular transition metal ion homeostasi... BP 2.072e-05
GO:0006810 transport BP 2.117e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
OXUPB1-2 elongation zone		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 261690_at AT1G50090 AtBCAT7, BCAT7, branched-chain amino acid transaminase 7 0.561 -0.008
2 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.527 0.015
3 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 0.516 -0.032
4 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] 0.501 -0.004
5 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 0.491 0.033
6 253830_at AT4G27652 unknown 0.422 0.056
7 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.384 0.053
8 251419_at AT3G60470 unknown 0.347 0.033
9 257947_at AT3G21720 ICL, isocitrate lyase 0.328 0.004
10 263837_at AT2G04500 [Cysteine/Histidine-rich C1 domain family protein] 0.325 -0.045
11 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 0.316 -0.001
12 257643_at AT3G25730 EDF3, ethylene response DNA binding factor 3 0.312 0.082
13 262743_at AT1G29020 [Calcium-binding EF-hand family protein] 0.310 0.064
14 261618_at AT1G33110 [MATE efflux family protein] 0.302 -0.053
15 261834_at AT1G10640 [Pectin lyase-like superfamily protein] 0.301 -0.037
16 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 0.300 0.057
17 253915_at AT4G27280 [Calcium-binding EF-hand family protein] 0.294 0.050
18 248048_at AT5G56080 ATNAS2, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, NAS2, nicotianamine synthase 2 0.290 -0.022
19 267623_at AT2G39650 unknown 0.283 0.059
20 245017_at ATCG00510 PSAI, photsystem I subunit I 0.275 -0.148
21 255938_at AT1G12620 [Pentatricopeptide repeat (PPR) superfamily protein] 0.271 0.010
22 246141_at AT5G19920 [Transducin/WD40 repeat-like superfamily protein] 0.263 -0.047
23 245024_at ATCG00120 ATPA, ATP synthase subunit alpha 0.263 -0.601
24 250948_at AT5G03490 [UDP-Glycosyltransferase superfamily protein] 0.232 -0.076
25 256877_at AT3G26470 [Powdery mildew resistance protein, RPW8 domain] 0.229 0.090
26 260484_at AT1G68360 [C2H2 and C2HC zinc fingers superfamily protein] 0.229 -0.012
27 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.224 0.043
28 246888_at AT5G26270 unknown 0.224 0.005
29 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 0.222 0.000
30 247921_at AT5G57660 ATCOL5, BBX6, B-box domain protein 6, COL5, CONSTANS-like 5 0.221 -0.060
31 246289_at AT3G56880 [VQ motif-containing protein] 0.216 -0.033
32 252411_at AT3G47430 PEX11B, peroxin 11B 0.216 0.009
33 249214_at AT5G42720 [Glycosyl hydrolase family 17 protein] 0.216 -0.003
34 255543_at AT4G01870 [tolB protein-related] 0.215 -0.061
35 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.211 0.064
36 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 0.210 -0.067
37 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 0.208 0.012
38 267301_at AT2G30110 ATUBA1, ubiquitin-activating enzyme 1, MOS5, MODIFIER OF SNC1 5, UBA1, ubiquitin-activating enzyme 1 0.206 -0.038
39 250135_at AT5G15360 unknown 0.202 -0.035
40 259199_at AT3G08980 [Peptidase S24/S26A/S26B/S26C family protein] 0.199 -0.036
41 260756_at AT1G48970 [NagB/RpiA/CoA transferase-like superfamily protein] 0.199 0.008
42 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 0.197 0.034
43 245006_at ATCG00340 PSAB 0.196 -0.285
44 249788_at AT5G24330 ATXR6, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6, SDG34, SET DOMAIN PROTEIN 34 0.195 0.021
45 265242_at AT2G07705 unknown 0.195 -0.080
46 250020_at AT5G18180 [H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein] 0.193 0.031
47 245050_at ATCG00070 PSBK, photosystem II reaction center protein K precursor 0.184 -0.138
48 251503_at AT3G59140 ABCC10, ATP-binding cassette C10, ATMRP14, multidrug resistance-associated protein 14, MRP14, multidrug resistance-associated protein 14 0.183 0.078
49 259075_at AT3G02320 [N2,N2-dimethylguanosine tRNA methyltransferase] 0.182 0.007
50 265990_at AT2G24280 [alpha/beta-Hydrolases superfamily protein] 0.182 -0.050
51 264457_at AT1G10400 [UDP-Glycosyltransferase superfamily protein] 0.181 -0.060
52 254246_at AT4G23250 CRK17, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 17, DUF26-21, EMB1290, EMBRYO DEFECTIVE 1290, RKC1, RECEPTOR-LIKE KINASE THALIANACOL-0GENOMICLIBRARY(CLONTECH).THEPOSITIVEPHAGECLONES C-X8-C-X2-C CLASS 1 0.179 -0.064
53 253579_at AT4G30610 BRS1, BRI1 SUPPRESSOR 1, SCPL24, SERINE CARBOXYPEPTIDASE 24 PRECURSOR 0.179 0.049
54 267166_at AT2G37720 TBL15, TRICHOME BIREFRINGENCE-LIKE 15 0.177 0.002
55 264393_at AT1G11880 [transferases, transferring hexosyl groups] 0.176 0.049
56 261784_at AT1G08220 unknown 0.174 0.005
57 247415_at AT5G63060 [Sec14p-like phosphatidylinositol transfer family protein] 0.173 0.025
58 254437_s_at AT3G06433 [pseudogene] 0.172 -0.026
59 263567_at AT2G15440 unknown 0.169 -0.014
60 258062_at AT3G26000 [Ribonuclease inhibitor] 0.169 -0.002
61 253259_at AT4G34410 RRTF1, redox responsive transcription factor 1 0.169 0.061
62 259866_at AT1G76640 CML39, CALMODULIN LIKE 39 0.168 0.061
63 266391_at AT2G41290 SSL2, strictosidine synthase-like 2 0.166 0.072
64 250165_at AT5G15290 CASP5, Casparian strip membrane domain protein 5 -0.677 0.030
65 255716_at AT4G00330 CRCK2, calmodulin-binding receptor-like cytoplasmic kinase 2 -0.639 0.001
66 247320_at AT5G64040 PSAN -0.601 0.053
67 249174_at AT5G42900 COR27, cold regulated gene 27 -0.590 0.020
68 248790_at AT5G47450 ATTIP2;3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, TIP2;3, tonoplast intrinsic protein 2;3 -0.588 0.026
69 252523_at AT3G46400 [Leucine-rich repeat protein kinase family protein] -0.586 -0.012
70 257595_at AT3G24750 unknown -0.524 0.004
71 245399_at AT4G17340 DELTA-TIP2, TIP2;2, tonoplast intrinsic protein 2;2 -0.517 0.025
72 250778_at AT5G05500 MOP10 -0.492 -0.004
73 254213_at AT4G23590 [Tyrosine transaminase family protein] -0.481 0.037
74 266356_at AT2G32300 UCC1, uclacyanin 1 -0.464 -0.059
75 251771_at AT3G56000 ATCSLA14, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A14, CSLA14, cellulose synthase like A14 -0.455 0.049
76 249202_at AT5G42580 CYP705A12, cytochrome P450, family 705, subfamily A, polypeptide 12 -0.422 -0.025
77 245792_at AT1G32100 ATPRR1, PRR1, pinoresinol reductase 1 -0.420 -0.028
78 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.413 -0.037
79 265720_at AT2G40110 [Yippee family putative zinc-binding protein] -0.408 0.028
80 252624_at AT3G44735 ATPSK3, PHYTOSULFOKINE 3 PRECURSOR, PSK1, PSK3, PHYTOSULFOKINE 3 PRECURSOR -0.393 0.097
81 247191_at AT5G65310 ATHB-5, ATHB5, homeobox protein 5, HB5, homeobox protein 5 -0.388 0.064
82 265983_at AT2G18550 ATHB21, homeobox protein 21, HB-2, homeobox-2, HB21, homeobox protein 21 -0.381 -0.062
83 259120_at AT3G02240 GLV4, GOLVEN 4, RGF7, root meristem growth factor 7 -0.367 0.068
84 247868_at AT5G57620 AtMYB36, myb domain protein 36, MYB36, myb domain protein 36 -0.362 -0.023
85 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.362 0.009
86 253530_at AT4G31530 [NAD(P)-binding Rossmann-fold superfamily protein] -0.358 -0.009
87 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.356 0.016
88 253834_at AT4G27800 PPH1, PROTEIN PHOSPHATASE 1, TAP38, thylakoid-associated phosphatase 38 -0.348 -0.017
89 251109_at AT5G01600 ATFER1, ARABIDOPSIS THALIANA FERRETIN 1, FER1, ferretin 1 -0.348 0.007
90 247333_at AT5G63600 ATFLS5, FLS5, flavonol synthase 5 -0.337 -0.028
91 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.315 0.036
92 261572_at AT1G01170 unknown -0.313 0.036
93 249824_at AT5G23380 unknown -0.307 0.024
94 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] -0.304 -0.032
95 264056_at AT2G28510 [Dof-type zinc finger DNA-binding family protein] -0.297 0.030
96 256600_at AT3G14850 TBL41, TRICHOME BIREFRINGENCE-LIKE 41 -0.291 0.023
97 256225_at AT1G56220 [Dormancy/auxin associated family protein] -0.289 -0.007
98 245123_at AT2G47450 CAO, CHAOS, CPSRP43, CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43 -0.289 0.008
99 253294_at AT4G33740 unknown -0.289 0.043
100 249870_at AT5G23080 TGH, TOUGH -0.285 -0.037
101 260938_at AT1G45170 unknown -0.284 0.042
102 261345_at AT1G79760 DTA4, downstream target of AGL15-4 -0.283 -0.043
103 260968_at AT1G12250 [Pentapeptide repeat-containing protein] -0.269 0.022
104 250718_at AT5G06240 emb2735, embryo defective 2735 -0.265 0.018
105 256870_at AT3G26300 CYP71B34, cytochrome P450, family 71, subfamily B, polypeptide 34 -0.264 -0.073
106 259576_at AT1G35330 [RING/U-box superfamily protein] -0.263 0.022
107 256563_at AT3G29780 RALFL27, ralf-like 27 -0.262 -0.060
108 257868_at AT3G25070 RIN4, RPM1 interacting protein 4 -0.261 -0.007
109 245341_at AT4G16447 unknown -0.261 -0.004
110 256743_at AT3G29370 P1R3, P1R3 -0.260 0.062
111 253150_at AT4G35660 unknown -0.260 -0.008
112 250409_at AT5G10860 CBSX3, CBS domain containing protein 3 -0.260 -0.003
113 247211_at AT5G64880 unknown -0.259 0.042
114 245386_at AT4G14010 RALFL32, ralf-like 32 -0.258 0.066
115 249031_at AT5G44900 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.257 -0.012
116 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] -0.248 -0.044
117 254225_at AT4G23670 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.246 0.105
118 262368_at AT1G73060 LPA3, Low PSII Accumulation 3 -0.245 0.010
119 250732_at AT5G06480 [Immunoglobulin E-set superfamily protein] -0.243 0.015
120 255540_at AT4G01800 AGY1, Albino or Glassy Yellow 1, AtcpSecA, Arabidopsis thaliana chloroplast SecA, SECA1 -0.242 -0.076
121 250231_at AT5G13910 LEP, LEAFY PETIOLE -0.242 0.027
122 257374_at AT2G43280 [Far-red impaired responsive (FAR1) family protein] -0.239 0.032
123 267075_at AT2G41070 ATBZIP12, DPBF4, EEL, ENHANCED EM LEVEL -0.234 0.021
124 247716_at AT5G59350 unknown -0.234 0.037
125 253017_at AT4G37970 ATCAD6, CAD6, cinnamyl alcohol dehydrogenase 6 -0.234 0.021