4.0:Information of module
Stem tissue 5 days NAA
In comparison with Callus help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009627 systemic acquired resistance BP 4.172e-21
GO:0009814 defense response, incompatible interacti... BP 2.083e-19
GO:0045087 innate immune response BP 4.578e-17
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044711 single-organism biosynthetic process BP 5.589e-18
GO:0042546 cell wall biogenesis BP 7.689e-17
GO:0000271 polysaccharide biosynthetic process BP 1.119e-16
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Stem tissue 5 days NAA		 Log2 signal ratio
Callus
1 250464_at AT5G10040 unknown 1.484 0.434
2 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 1.286 0.723
3 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 1.254 1.236
4 250798_at AT5G05340 PRX52, peroxidase 52 1.218 0.519
5 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 1.209 1.643
6 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 1.187 0.754
7 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 1.169 0.648
8 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 1.123 0.789
9 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 1.120 -0.125
10 258064_at AT3G14680 CYP72A14, cytochrome P450, family 72, subfamily A, polypeptide 14 1.093 -0.216
11 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 1.089 0.620
12 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 1.076 1.287
13 255807_at AT4G10270 [Wound-responsive family protein] 1.021 0.738
14 254630_at AT4G18360 GOX3, glycolate oxidase 3 0.964 0.934
15 261023_at AT1G12200 FMO, flavin monooxygenase 0.951 -0.021
16 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 0.933 0.725
17 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 0.925 1.551
18 247024_at AT5G66985 unknown 0.909 1.449
19 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.902 0.169
20 263210_at AT1G10585 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.895 -0.102
21 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 0.877 0.244
22 255110_at AT4G08770 Prx37, peroxidase 37 0.865 1.034
23 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.842 0.126
24 254271_at AT4G23150 CRK7, cysteine-rich RLK (RECEPTOR-like protein kinase) 7 0.841 -0.934
25 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 0.836 0.317
26 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 0.835 0.303
27 248684_at AT5G48485 DIR1, DEFECTIVE IN INDUCED RESISTANCE 1 0.831 -0.659
28 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.829 1.514
29 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.824 0.525
30 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 0.820 1.093
31 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.819 0.631
32 250152_at AT5G15120 unknown 0.804 0.385
33 250090_at AT5G17330 GAD, glutamate decarboxylase, GAD1, GLUTAMATE DECARBOXYLASE 1 0.792 0.658
34 245226_at AT3G29970 [B12D protein] 0.791 1.593
35 252882_at AT4G39675 unknown 0.786 1.753
36 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 0.782 0.664
37 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.777 0.868
38 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 0.768 0.949
39 249333_at AT5G40990 GLIP1, GDSL lipase 1 0.768 -0.143
40 261005_at AT1G26420 [FAD-binding Berberine family protein] 0.762 -0.204
41 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 0.753 0.917
42 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.751 0.973
43 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 0.747 0.902
44 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.734 0.309
45 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.730 1.123
46 260556_at AT2G43620 [Chitinase family protein] 0.728 -0.101
47 245098_at AT2G40940 ERS, ETHYLENE RESPONSE SENSOR, ERS1, ethylene response sensor 1 0.724 0.234
48 262001_at AT1G33790 [jacalin lectin family protein] 0.723 0.817
49 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.706 0.583
50 258532_at AT3G06700 [Ribosomal L29e protein family] 0.694 1.693
51 260784_at AT1G06180 ATMYB13, myb domain protein 13, ATMYBLFGN, MYB13, myb domain protein 13 0.671 -0.470
52 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.670 0.296
53 246098_at AT5G20400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.669 0.346
54 264635_at AT1G65500 unknown 0.666 0.678
55 261930_at AT1G22440 [Zinc-binding alcohol dehydrogenase family protein] 0.664 0.264
56 248322_at AT5G52760 [Copper transport protein family] 0.660 0.158
57 254200_at AT4G24110 unknown 0.657 0.090
58 256787_at AT3G13790 ATBFRUCT1, ATCWINV1, ARABIDOPSIS THALIANA CELL WALL INVERTASE 1 0.655 1.494
59 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.649 0.366
60 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.640 -0.349
61 256596_at AT3G28540 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.639 0.252
62 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.638 -0.628
63 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 0.636 0.271
64 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 0.632 -0.458
65 257654_at AT3G13310 DJC66, DNA J protein C66 0.627 1.110
66 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 0.623 -0.110
67 249384_at AT5G39890 unknown 0.622 1.073
68 257061_at AT3G18250 [Putative membrane lipoprotein] 0.621 0.428
69 261020_at AT1G26390 [FAD-binding Berberine family protein] 0.610 0.573
70 247151_at AT5G65640 bHLH093, beta HLH protein 93 0.608 0.395
71 250670_at AT5G06860 ATPGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1, PGIP1, polygalacturonase inhibiting protein 1 0.607 0.296
72 265482_at AT2G15780 [Cupredoxin superfamily protein] 0.596 0.015
73 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 0.594 -0.528
74 261242_at AT1G32960 ATSBT3.3, SBT3.3 0.594 -0.610
75 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.592 0.440
76 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.586 0.795
77 264495_at AT1G27380 RIC2, ROP-interactive CRIB motif-containing protein 2 -1.106 -1.130
78 257021_at AT3G19710 BCAT4, branched-chain aminotransferase4 -1.090 -0.337
79 246380_at AT1G57750 CYP96A15, cytochrome P450, family 96, subfamily A, polypeptide 15, MAH1, MID-CHAIN ALKANE HYDROXYLASE 1 -1.077 -0.169
80 249227_at AT5G42180 PER64, peroxidase 64 -1.043 -0.040
81 267262_at AT2G22990 SCPL8, SERINE CARBOXYPEPTIDASE-LIKE 8, SNG1, sinapoylglucose 1 -1.023 -1.618
82 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -1.018 -1.296
83 265342_at AT2G18300 HBI1, HOMOLOG OF BEE2 INTERACTING WITH IBH 1 -1.013 -0.882
84 261395_at AT1G79700 WRI4, WRINKLED 4 -0.996 -0.394
85 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] -0.985 -0.503
86 257757_at AT3G18660 GUX1, glucuronic acid substitution of xylan 1, PGSIP1, plant glycogenin-like starch initiation protein 1 -0.943 -0.221
87 246275_at AT4G36540 BEE2, BR enhanced expression 2 -0.921 -0.938
88 256569_at AT3G19550 unknown -0.906 -0.892
89 259788_at AT1G29670 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.901 -0.246
90 261703_at AT1G32770 ANAC012, NAC domain containing protein 12, NAC012, NAC domain containing protein 12, NST3, NAC SECONDARY WALL THICKENING PROMOTING 3, SND1, SECONDARY WALL-ASSOCIATED NAC DOMAIN 1 -0.891 -1.222
91 257793_at AT3G26960 [Pollen Ole e 1 allergen and extensin family protein] -0.883 -0.791
92 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 -0.878 -0.445
93 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 -0.849 -0.900
94 247921_at AT5G57660 ATCOL5, BBX6, B-box domain protein 6, COL5, CONSTANS-like 5 -0.837 0.632
95 262612_at AT1G14150 PnsL2, Photosynthetic NDH subcomplex L 2, PQL1, PsbQ-like 1, PQL2, PsbQ-like 2 -0.835 -0.607
96 245105_at AT2G41610 unknown -0.829 0.060
97 264774_at AT1G22890 unknown -0.823 -0.295
98 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 -0.809 -0.432
99 267298_at AT2G23760 BLH4, BEL1-like homeodomain 4, SAW2, SAWTOOTH 2 -0.791 -0.987
100 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 -0.777 0.159
101 252412_at AT3G47295 unknown -0.761 -0.655
102 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 -0.756 -0.641
103 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.750 0.436
104 251297_at AT3G62020 GLP10, germin-like protein 10 -0.750 -0.808
105 254924_at AT4G11330 ATMPK5, MAP kinase 5, MPK5, MAP kinase 5 -0.749 -0.940
106 254122_at AT4G24510 CER2, ECERIFERUM 2, VC-2, VC2 -0.739 -0.041
107 255756_at AT1G19940 AtGH9B5, glycosyl hydrolase 9B5, GH9B5, glycosyl hydrolase 9B5 -0.736 -1.290
108 257859_at AT3G12955 SAUR74, SMALL AUXIN UPREGULATED RNA 74 -0.731 -1.045
109 258468_at AT3G06070 unknown -0.729 -1.171
110 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 -0.722 0.454
111 248121_at AT5G54690 GAUT12, galacturonosyltransferase 12, IRX8, IRREGULAR XYLEM 8, LGT6 -0.720 -0.295
112 247037_at AT5G67070 RALFL34, ralf-like 34 -0.718 0.215
113 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 -0.707 -0.303
114 260840_at AT1G29050 TBL38, TRICHOME BIREFRINGENCE-LIKE 38 -0.697 0.206
115 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -0.685 -0.842
116 252280_at AT3G49260 iqd21, IQ-domain 21 -0.681 -0.762
117 259981_at AT1G76450 [Photosystem II reaction center PsbP family protein] -0.673 -0.461
118 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A -0.665 -0.460
119 249123_at AT5G43760 KCS20, 3-ketoacyl-CoA synthase 20 -0.654 0.374
120 250182_at AT5G14470 AtGALK2, GALK2, galactokinase 2 -0.652 -0.838
121 265038_at AT1G03920 [Protein kinase family protein] -0.642 0.093
122 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 -0.641 -0.141
123 247170_at AT5G65530 [Protein kinase superfamily protein] -0.639 0.111
124 247590_at AT5G60720 unknown -0.638 0.238
125 251157_at AT3G63140 CSP41A, chloroplast stem-loop binding protein of 41 kDa -0.627 -0.050
126 251303_at AT3G61910 ANAC066, NAC domain protein 66, NAC066, NAC domain protein 66, NST2, NAC SECONDARY WALL THICKENING PROMOTING FACTOR2 -0.618 0.301
127 266708_at AT2G03200 [Eukaryotic aspartyl protease family protein] -0.616 -0.678
128 259583_at AT1G28070 unknown -0.613 0.757
129 249134_at AT5G43150 unknown -0.605 0.652
130 249472_at AT5G39210 CRR7, CHLORORESPIRATORY REDUCTION 7 -0.605 0.075
131 265463_at AT2G37090 IRX9, IRREGULAR XYLEM 9 -0.602 0.307
132 253876_at AT4G27430 CIP7, COP1-interacting protein 7 -0.592 -0.567
133 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A -0.591 0.101
134 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.590 -0.565
135 267141_at AT2G38090 [Duplicated homeodomain-like superfamily protein] -0.585 0.334
136 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 -0.585 -0.236
137 266526_at AT2G16980 [Major facilitator superfamily protein] -0.583 -0.785
138 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] -0.581 -0.730
139 264559_at AT1G09610 GXM3, glucuronoxylan methyltransferase 3 -0.580 -1.075
140 251785_at AT3G55130 ABCG19, ATP-binding cassette G19, ATWBC19, white-brown complex homolog 19, WBC19, white-brown complex homolog 19 -0.579 -0.037
141 254305_at AT4G22200 AKT2, AKT2/3, potassium transport 2/3, AKT3, KT2/3, potassium transport 2/3 -0.576 -1.255
142 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 -0.575 -0.344
143 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 -0.571 -1.010
144 254564_at AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 -0.568 -0.417
145 246512_at AT5G15630 COBL4, COBRA-LIKE4, IRX6, IRREGULAR XYLEM 6 -0.568 -1.145
146 255302_at AT4G04830 ATMSRB5, methionine sulfoxide reductase B5, MSRB5, methionine sulfoxide reductase B5 -0.567 0.484
147 259658_at AT1G55370 NDF5, NDH-dependent cyclic electron flow 5 -0.566 -0.827
148 249818_at AT5G23860 TUB8, tubulin beta 8 -0.564 0.790
149 264119_at AT1G79180 ATMYB63, MYB DOMAIN PROTEIN 63, MYB63, myb domain protein 63 -0.563 0.852
150 256926_at AT3G22540 unknown -0.559 -0.218
151 265452_at AT2G46510 AIB, ABA-inducible BHLH-type transcription factor, ATAIB, ABA-inducible BHLH-type transcription factor, JAM1, JA-associated MYC2-like 1 -0.555 0.457