4.0:Information of module
Stem tissue 2 days NAA
In comparison with csn4-1 mutant help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.336e-28
GO:0009165 nucleotide biosynthetic process BP 3.909e-24
GO:1901293 nucleoside phosphate biosynthetic proces... BP 4.878e-24
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010413 glucuronoxylan metabolic process BP 7.536e-14
GO:0045492 xylan biosynthetic process BP 7.536e-14
GO:0045491 xylan metabolic process BP 1.174e-13
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Stem tissue 2 days NAA		 Log2 signal ratio
csn4-1 mutant
1 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 1.402 0.818
2 263210_at AT1G10585 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 1.079 0.343
3 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 1.063 0.770
4 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 1.059 -0.113
5 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 1.041 -0.445
6 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 1.015 0.206
7 266421_at AT2G38540 ATLTP1, ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, LP1, lipid transfer protein 1, LTP1, LIPID TRANSFER PROTEIN 1 0.998 0.195
8 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.964 1.353
9 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.949 0.492
10 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.943 -0.367
11 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.928 -0.223
12 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.898 0.182
13 260556_at AT2G43620 [Chitinase family protein] 0.841 1.041
14 260561_at AT2G43580 [Chitinase family protein] 0.801 0.001
15 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.755 0.314
16 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.740 0.207
17 249271_at AT5G41790 CIP1, COP1-interactive protein 1 0.730 0.408
18 245098_at AT2G40940 ERS, ETHYLENE RESPONSE SENSOR, ERS1, ethylene response sensor 1 0.716 0.055
19 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.694 -0.049
20 255787_at AT2G33590 AtCRL1, CRL1, CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1 0.680 0.252
21 248139_at AT5G54970 unknown 0.680 0.237
22 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.669 1.272
23 246366_at AT1G51850 [Leucine-rich repeat protein kinase family protein] 0.660 0.242
24 266903_at AT2G34570 MEE21, maternal effect embryo arrest 21 0.617 0.213
25 252625_at AT3G44750 ATHD2A, HD2A, HISTONE DEACETYLASE 2A, HDA3, histone deacetylase 3, HDT1 0.611 0.299
26 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.596 0.391
27 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 0.594 -0.220
28 248036_at AT5G55920 OLI2, OLIGOCELLULA 2 0.593 0.452
29 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.591 -0.144
30 261005_at AT1G26420 [FAD-binding Berberine family protein] 0.583 0.231
31 255874_at AT2G40550 ETG1, E2F target gene 1 0.570 -0.156
32 258059_at AT3G29035 ANAC059, Arabidopsis NAC domain containing protein 59, ATNAC3, NAC domain containing protein 3, NAC3, NAC domain containing protein 3, ORS1, ORE1 SISTER1 0.568 -0.329
33 246921_at AT5G25080 [Sas10/Utp3/C1D family] 0.568 -0.028
34 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.566 0.155
35 250670_at AT5G06860 ATPGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1, PGIP1, polygalacturonase inhibiting protein 1 0.563 -0.035
36 266253_at AT2G27840 HD2D, histone deacetylase 2D, HDA13, HISTONE DEACETYLASE 13, HDT04, HDT4 0.547 0.177
37 254216_at AT4G23710 VAG2, vacuolar ATP synthase subunit G2, VATG2, VACUOLAR ATP SYNTHASE SUBUNIT G2, VHA-G2 0.537 -0.082
38 248236_at AT5G53870 AtENODL1, ENODL1, early nodulin-like protein 1 0.533 -0.566
39 259278_at AT3G01160 unknown 0.529 0.357
40 262094_at AT1G56110 NOP56, homolog of nucleolar protein NOP56 0.525 0.266
41 261330_at AT1G44900 ATMCM2, MCM2, MINICHROMOSOME MAINTENANCE 2 0.522 -0.037
42 248230_at AT5G53830 [VQ motif-containing protein] 0.516 -0.273
43 253609_at AT4G30190 AHA2, H(+)-ATPase 2, HA2, H(+)-ATPase 2, PMA2, PLASMA MEMBRANE PROTON ATPASE 2 0.515 -0.065
44 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 0.511 0.229
45 267004_at AT2G34260 WDR55, human WDR55 (WD40 repeat) homolog 0.504 0.136
46 258505_at AT3G06530 [ARM repeat superfamily protein] 0.498 0.262
47 250434_at AT5G10390 H3.1, histone 3.1 0.489 0.006
48 266168_at AT2G38870 [Serine protease inhibitor, potato inhibitor I-type family protein] 0.472 0.287
49 258871_at AT3G03060 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.470 0.463
50 260824_at AT1G06720 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.467 0.539
51 256661_at AT3G11964 RRP5, Ribosomal RNA Processing 5 0.465 0.332
52 267230_at AT2G44080 ARL, ARGOS-like 0.464 -0.128
53 248335_at AT5G52450 [MATE efflux family protein] 0.459 -0.085
54 266668_at AT2G29760 OTP81, ORGANELLE TRANSCRIPT PROCESSING 81 0.456 0.158
55 257658_at AT3G13230 [RNA-binding KH domain-containing protein] 0.455 0.085
56 257021_at AT3G19710 BCAT4, branched-chain aminotransferase4 -1.423 -0.047
57 246380_at AT1G57750 CYP96A15, cytochrome P450, family 96, subfamily A, polypeptide 15, MAH1, MID-CHAIN ALKANE HYDROXYLASE 1 -1.078 0.020
58 251297_at AT3G62020 GLP10, germin-like protein 10 -1.001 -0.914
59 253657_at AT4G30110 ATHMA2, ARABIDOPSIS HEAVY METAL ATPASE 2, HMA2, heavy metal atpase 2 -0.975 0.033
60 257233_at AT3G15050 IQD10, IQ-domain 10 -0.945 -0.063
61 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 -0.912 -0.133
62 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 -0.888 0.180
63 251733_at AT3G56240 CCH, copper chaperone -0.871 -0.158
64 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -0.867 -0.222
65 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 -0.856 -0.078
66 247590_at AT5G60720 unknown -0.830 -0.398
67 255302_at AT4G04830 ATMSRB5, methionine sulfoxide reductase B5, MSRB5, methionine sulfoxide reductase B5 -0.823 -0.252
68 248121_at AT5G54690 GAUT12, galacturonosyltransferase 12, IRX8, IRREGULAR XYLEM 8, LGT6 -0.820 -0.538
69 257793_at AT3G26960 [Pollen Ole e 1 allergen and extensin family protein] -0.787 -0.017
70 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 -0.755 -0.153
71 265463_at AT2G37090 IRX9, IRREGULAR XYLEM 9 -0.750 -0.468
72 265342_at AT2G18300 HBI1, HOMOLOG OF BEE2 INTERACTING WITH IBH 1 -0.746 -0.426
73 252280_at AT3G49260 iqd21, IQ-domain 21 -0.745 -0.197
74 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor -0.733 -0.529
75 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 -0.729 0.073
76 263465_at AT2G31940 unknown -0.727 -0.335
77 260840_at AT1G29050 TBL38, TRICHOME BIREFRINGENCE-LIKE 38 -0.719 -0.297
78 246512_at AT5G15630 COBL4, COBRA-LIKE4, IRX6, IRREGULAR XYLEM 6 -0.703 -0.341
79 265038_at AT1G03920 [Protein kinase family protein] -0.698 0.033
80 260205_at AT1G70700 JAZ9, JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY7 -0.697 -0.381
81 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C -0.695 -0.058
82 251303_at AT3G61910 ANAC066, NAC domain protein 66, NAC066, NAC domain protein 66, NST2, NAC SECONDARY WALL THICKENING PROMOTING FACTOR2 -0.690 0.002
83 257151_at AT3G27200 [Cupredoxin superfamily protein] -0.687 -0.912
84 257859_at AT3G12955 SAUR74, SMALL AUXIN UPREGULATED RNA 74 -0.685 0.307
85 261809_at AT1G08340 [Rho GTPase activating protein with PAK-box/P21-Rho-binding domain] -0.669 -0.119
86 264119_at AT1G79180 ATMYB63, MYB DOMAIN PROTEIN 63, MYB63, myb domain protein 63 -0.667 -0.226
87 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 -0.659 -0.329
88 245792_at AT1G32100 ATPRR1, PRR1, pinoresinol reductase 1 -0.652 -0.883
89 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 -0.635 0.110
90 267141_at AT2G38090 [Duplicated homeodomain-like superfamily protein] -0.633 -0.408
91 250182_at AT5G14470 AtGALK2, GALK2, galactokinase 2 -0.619 -0.726
92 259680_at AT1G77690 LAX3, like AUX1 3 -0.614 -0.928
93 267298_at AT2G23760 BLH4, BEL1-like homeodomain 4, SAW2, SAWTOOTH 2 -0.609 -0.245
94 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.607 -1.032
95 260666_at AT1G19300 ATGATL1, GATL1, GALACTURONOSYLTRANSFERASE-LIKE 1, GLZ1, GAOLAOZHUANGREN 1, PARVUS, PARVUS -0.601 -0.253
96 256054_at AT1G07120 unknown -0.591 -0.027
97 252870_at AT4G39940 AKN2, APS-kinase 2, APK2, ADENOSINE-5'-PHOSPHOSULFATE (APS) KINASE 2 -0.579 -0.226
98 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.577 -0.776
99 254687_at AT4G13770 CYP83A1, cytochrome P450, family 83, subfamily A, polypeptide 1, REF2, REDUCED EPIDERMAL FLUORESCENCE 2 -0.570 0.187
100 261794_at AT1G16060 ADAP, ARIA-interacting double AP2 domain protein, WRI3, WRINKLED 3 -0.568 -0.024
101 257668_at AT3G20460 [Major facilitator superfamily protein] -0.566 -0.369
102 261248_at AT1G20030 [Pathogenesis-related thaumatin superfamily protein] -0.560 -0.057
103 254862_at AT4G12030 BASS5, BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, BAT5, bile acid transporter 5 -0.559 -0.027
104 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 -0.559 -0.117
105 259822_at AT1G66230 AtMYB20, myb domain protein 20, MYB20, myb domain protein 20 -0.557 -0.123
106 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.557 -0.784
107 263992_at AT2G12920 [gypsy-like retrotransposon family, has a 1.2e-128 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.557 0.004
108 264559_at AT1G09610 GXM3, glucuronoxylan methyltransferase 3 -0.554 -0.170
109 247041_at AT5G67180 TOE3, target of early activation tagged (EAT) 3 -0.547 0.012