4.0:Information of module
Starch sheath 2 days NAA
In comparison with root epidermis and lateral root cap pH4.6 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.065e-59
GO:0006412 translation BP 3.252e-50
GO:0032259 methylation BP 1.661e-43
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042546 cell wall biogenesis BP 3.718e-07
GO:0009834 plant-type secondary cell wall biogenesi... BP 1.997e-06
GO:0009832 plant-type cell wall biogenesis BP 1.325e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Starch sheath 2 days NAA		 Log2 signal ratio
root epidermis and lateral root cap pH4.6
1 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 1.188 0.063
2 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 1.179 0.028
3 256890_at AT3G23830 AtGRP4, GR-RBP4, GRP4, glycine-rich RNA-binding protein 4 1.107 0.174
4 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 1.054 0.046
5 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 1.044 -0.054
6 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 1.032 -0.025
7 256794_at AT3G22230 [Ribosomal L27e protein family] 1.018 0.023
8 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.987 -0.023
9 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 0.975 -0.000
10 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.970 -0.064
11 258532_at AT3G06700 [Ribosomal L29e protein family] 0.925 0.056
12 251486_at AT3G59540 [Ribosomal L38e protein family] 0.918 0.038
13 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.884 0.405
14 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.884 0.155
15 247607_at AT5G60960 PNM1, PPR protein localized to the nucleus and mitochondria 1 0.873 0.166
16 260668_at AT1G19530 unknown 0.866 -0.028
17 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.846 0.261
18 262118_at AT1G02850 BGLU11, beta glucosidase 11 0.836 0.169
19 251738_at AT3G56150 ATEIF3C-1, ATTIF3C1, EIF3C, eukaryotic translation initiation factor 3C, EIF3C-1, TIF3C1 0.834 0.092
20 251476_at AT3G59670 unknown 0.817 0.118
21 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.816 -0.051
22 257730_at AT3G18420 [Protein prenylyltransferase superfamily protein] 0.807 0.119
23 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 0.804 -0.008
24 261330_at AT1G44900 ATMCM2, MCM2, MINICHROMOSOME MAINTENANCE 2 0.799 0.153
25 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 0.799 -0.013
26 256983_at AT3G13470 Cpn60beta2, chaperonin-60beta2 0.794 0.065
27 266822_at AT2G44860 [Ribosomal protein L24e family protein] 0.792 0.165
28 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 0.791 -0.064
29 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 0.779 0.065
30 251846_at AT3G54560 HTA11, histone H2A 11 0.777 0.023
31 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] 0.776 -0.087
32 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 0.771 0.141
33 260235_at AT1G74560 NRP1, NAP1-related protein 1 0.770 0.214
34 254355_at AT4G22380 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.754 0.100
35 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.750 -0.094
36 245098_at AT2G40940 ERS, ETHYLENE RESPONSE SENSOR, ERS1, ethylene response sensor 1 0.748 -0.000
37 249271_at AT5G41790 CIP1, COP1-interactive protein 1 0.742 0.033
38 254162_at AT4G24440 [transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)] 0.727 -0.030
39 266256_at AT2G27710 [60S acidic ribosomal protein family] 0.727 0.104
40 247654_at AT5G59850 [Ribosomal protein S8 family protein] 0.723 0.087
41 245145_at AT2G45440 DHDPS2, dihydrodipicolinate synthase 2 0.722 -0.018
42 251538_at AT3G58660 [Ribosomal protein L1p/L10e family] 0.707 0.252
43 264260_at AT1G09210 AtCRT1b, CRT1b, calreticulin 1b 0.694 -0.011
44 252055_at AT3G52580 [Ribosomal protein S11 family protein] 0.682 0.105
45 256681_at AT3G52340 ATSPP2, SUCROSE-PHOSPHATASE 2, SPP2, sucrose-6F-phosphate phosphohydrolase 2 0.680 -0.043
46 259403_at AT1G17745 PGDH, 3-phosphoglycerate dehydrogenase, PGDH2, phosphoglycerate dehydrogenase 2 0.677 0.024
47 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.672 -0.011
48 251029_at AT5G02050 [Mitochondrial glycoprotein family protein] 0.670 0.408
49 251958_at AT3G53560 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.665 0.037
50 253492_at AT4G31810 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.662 0.207
51 265671_at AT2G32060 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.658 0.110
52 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.657 -0.056
53 267230_at AT2G44080 ARL, ARGOS-like 0.654 0.059
54 246220_at AT4G37210 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.650 0.041
55 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.649 0.421
56 258410_at AT3G16780 [Ribosomal protein L19e family protein] 0.649 0.135
57 248614_at AT5G49560 [Putative methyltransferase family protein] 0.640 0.095
58 256442_at AT3G10930 unknown 0.639 0.028
59 255657_at AT4G00810 [60S acidic ribosomal protein family] 0.636 0.023
60 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.631 0.472
61 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.631 0.021
62 252625_at AT3G44750 ATHD2A, HD2A, HISTONE DEACETYLASE 2A, HDA3, histone deacetylase 3, HDT1 0.629 0.213
63 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.622 0.067
64 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.618 0.352
65 249466_at AT5G39740 OLI7, OLIGOCELLULA 7, RPL5B, ribosomal protein L5 B 0.611 0.103
66 248036_at AT5G55920 OLI2, OLIGOCELLULA 2 0.609 0.248
67 257177_at AT3G23490 CYN, cyanase 0.607 -0.026
68 253383_at AT4G32900 [Peptidyl-tRNA hydrolase II (PTH2) family protein] 0.602 0.055
69 262766_at AT1G13160 [ARM repeat superfamily protein] 0.600 0.173
70 261023_at AT1G12200 FMO, flavin monooxygenase 0.596 0.007
71 253116_at AT4G35850 [Pentatricopeptide repeat (PPR) superfamily protein] 0.596 0.154
72 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.593 -0.004
73 250670_at AT5G06860 ATPGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1, PGIP1, polygalacturonase inhibiting protein 1 0.591 0.054
74 248335_at AT5G52450 [MATE efflux family protein] 0.591 0.034
75 249227_at AT5G42180 PER64, peroxidase 64 -0.717 -0.279
76 266989_at AT2G39330 JAL23, jacalin-related lectin 23 -0.669 -0.060
77 255246_at AT4G05640 unknown -0.651 -0.011
78 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 -0.646 0.014
79 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 -0.637 -0.111
80 262858_at AT1G14940 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.634 -0.040
81 247663_at AT5G60110 APUM18, pumilio 18, PUM18, pumilio 18 -0.615 -0.032
82 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 -0.613 -0.084
83 253113_at AT4G35985 [Senescence/dehydration-associated protein-related] -0.607 -0.086
84 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A -0.606 -0.045
85 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 -0.556 0.042
86 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.554 0.063
87 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 -0.543 -0.165
88 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] -0.543 -0.078
89 260403_at AT1G69810 ATWRKY36, WRKY36, WRKY DNA-binding protein 36 -0.538 -0.024
90 250233_at AT5G13460 IQD11, IQ-domain 11 -0.529 -0.050
91 263084_at AT2G27180 unknown -0.529 -0.013
92 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) -0.515 -0.177
93 247731_at AT5G59590 UGT76E2, UDP-glucosyl transferase 76E2 -0.511 -0.021
94 263689_at AT1G26820 RNS3, ribonuclease 3 -0.504 -0.151
95 249564_at AT5G38400 unknown -0.498 -0.023
96 246761_at AT5G27980 [Seed maturation protein] -0.495 0.034
97 256860_at AT3G23840 CER26-LIKE, CER26-LIKE -0.488 -0.127
98 256668_at AT3G32190 unknown -0.486 0.126
99 254311_at AT4G22440 unknown -0.484 -0.028
100 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA -0.480 -0.022
101 256435_at AT3G11180 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.477 -0.090
102 250770_at AT5G05390 LAC12, laccase 12 -0.477 -0.053
103 265754_x_at AT2G10640 [CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.474 -0.005
104 257421_at AT1G12030 unknown -0.471 -0.046
105 260618_at AT1G53230 TCP3, TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 -0.463 -0.076
106 246635_at AT1G31720 unknown -0.461 -0.034
107 249209_at AT5G42620 [metalloendopeptidases] -0.460 -0.048
108 255918_at AT5G28570 unknown -0.457 -0.024
109 249852_at AT5G23270 ATSTP11, SUGAR TRANSPORTER 11, STP11, sugar transporter 11 -0.455 -0.079
110 257090_at AT3G20530 [Protein kinase superfamily protein] -0.450 -0.105
111 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.449 -0.035
112 262805_at AT1G20900 AHL27, AT-hook motif nuclear-localized protein 27, ESC, ESCAROLA, ORE7, ORESARA 7 -0.449 0.045
113 251292_at AT3G61920 unknown -0.446 -0.020
114 265080_at AT1G55570 sks12, SKU5 similar 12 -0.443 -0.025
115 260158_at AT1G79910 [Regulator of Vps4 activity in the MVB pathway protein] -0.442 -0.107
116 246783_at AT5G27360 SFP2 -0.436 -0.030
117 246293_at AT3G56710 SIB1, sigma factor binding protein 1 -0.429 -0.077
118 258672_at AT3G08570 [Phototropic-responsive NPH3 family protein] -0.425 0.027
119 256662_at AT3G11980 FAR2, FATTY ACID REDUCTASE 2, MS2, MALE STERILITY 2 -0.424 -0.029
120 258726_at AT3G11745 unknown -0.423 -0.014
121 251252_at AT3G62230 DAF1, DUO1-activated F-box 1 -0.422 -0.040
122 265300_at AT2G13950 [Cysteine/Histidine-rich C1 domain family protein] -0.422 0.014
123 246826_at AT5G26310 UGT72E3 -0.421 -0.113
124 259884_at AT1G76390 PUB43, plant U-box 43 -0.420 0.005
125 259650_at AT1G55290 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -0.418 -0.387
126 257900_at AT3G28420 [Putative membrane lipoprotein] -0.415 -0.036
127 261441_at AT1G28470 ANAC010, NAC domain containing protein 10, NAC010, NAC domain containing protein 10, SND3, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3 -0.414 -0.164
128 254186_at AT4G24010 ATCSLG1, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, CSLG1, cellulose synthase like G1 -0.406 -0.079
129 264720_at AT1G70080 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.401 0.070
130 248355_at AT5G52340 ATEXO70A2, exocyst subunit exo70 family protein A2, EXO70A2, exocyst subunit exo70 family protein A2 -0.397 -0.008
131 259961_at AT1G53700 PK3AT, PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG1, WAG 1 -0.394 -0.053
132 245244_at AT1G44350 ILL6, IAA-leucine resistant (ILR)-like gene 6 -0.392 0.071
133 254263_at AT4G23493 unknown -0.391 -0.078
134 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase -0.390 -0.253
135 258177_at AT3G21660 [UBX domain-containing protein] -0.389 0.023
136 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.389 0.011
137 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 -0.389 0.009
138 257752_at AT3G18720 [F-box family protein] -0.389 0.016
139 262031_x_at AT1G37160 [gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GI:4567296 from (Arabidopsis thaliana)] -0.388 -0.059
140 249476_at AT5G38910 [RmlC-like cupins superfamily protein] -0.387 -0.028
141 247880_at AT5G57780 P1R1, P1R1 -0.385 0.035
142 247427_at AT5G62580 [ARM repeat superfamily protein] -0.382 0.003
143 253587_at AT4G30770 [Putative membrane lipoprotein] -0.377 -0.035
144 253501_at AT4G32010 HSI2-L1, HSL1, HSI2-like 1, VAL2, VP1/ABI3-LIKE 2 -0.372 -0.094
145 265903_at AT2G25600 AKT6, SPIK, Shaker pollen inward K+ channel -0.372 -0.063
146 245567_at AT4G14630 GLP9, germin-like protein 9 -0.365 0.007
147 247831_at AT5G58540 [Protein kinase superfamily protein] -0.365 0.022