4.0:Information of module
Starch sheath 2 days NAA
In comparison with seed germinating in countinuous light 1 h SL help
Scatter plot of seleted modules.
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.065e-59
GO:0006412 translation BP 3.252e-50
GO:0032259 methylation BP 1.661e-43
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GOID Term Ontology p-value
GO:0042546 cell wall biogenesis BP 3.718e-07
GO:0009834 plant-type secondary cell wall biogenesi... BP 1.997e-06
GO:0009832 plant-type cell wall biogenesis BP 1.325e-05
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List of genes in module
・・・up requlated genes  ・・・down regulated genes
probeID AGICode Annotation Log2 signal ratio
Starch sheath 2 days NAA
Log2 signal ratio
seed germinating in countinuous light 1 h SL
1 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 1.188 1.371
2 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 1.179 -0.666
3 256890_at AT3G23830 AtGRP4, GR-RBP4, GRP4, glycine-rich RNA-binding protein 4 1.107 0.602
4 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 1.054 0.265
5 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 1.044 0.778
6 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 1.032 -0.538
7 256794_at AT3G22230 [Ribosomal L27e protein family] 1.018 0.795
8 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.987 -1.019
9 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 0.975 -0.581
10 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.970 -0.904
11 258532_at AT3G06700 [Ribosomal L29e protein family] 0.925 1.814
12 251486_at AT3G59540 [Ribosomal L38e protein family] 0.918 0.269
13 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.884 -0.739
14 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.884 0.676
15 247607_at AT5G60960 PNM1, PPR protein localized to the nucleus and mitochondria 1 0.873 0.420
16 260668_at AT1G19530 unknown 0.866 1.206
17 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.846 -0.168
18 262118_at AT1G02850 BGLU11, beta glucosidase 11 0.836 0.544
19 251738_at AT3G56150 ATEIF3C-1, ATTIF3C1, EIF3C, eukaryotic translation initiation factor 3C, EIF3C-1, TIF3C1 0.834 1.055
20 251476_at AT3G59670 unknown 0.817 0.484
21 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.816 -0.465
22 257730_at AT3G18420 [Protein prenylyltransferase superfamily protein] 0.807 0.697
23 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 0.804 0.402
24 261330_at AT1G44900 ATMCM2, MCM2, MINICHROMOSOME MAINTENANCE 2 0.799 0.451
25 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 0.799 0.652
26 256983_at AT3G13470 Cpn60beta2, chaperonin-60beta2 0.794 0.751
27 266822_at AT2G44860 [Ribosomal protein L24e family protein] 0.792 0.875
28 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 0.791 -0.532
29 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 0.779 1.267
30 251846_at AT3G54560 HTA11, histone H2A 11 0.777 -0.171
31 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] 0.776 0.019
32 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 0.771 0.603
33 260235_at AT1G74560 NRP1, NAP1-related protein 1 0.770 0.331
34 254355_at AT4G22380 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.754 0.816
35 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.750 1.528
36 245098_at AT2G40940 ERS, ETHYLENE RESPONSE SENSOR, ERS1, ethylene response sensor 1 0.748 -0.074
37 249271_at AT5G41790 CIP1, COP1-interactive protein 1 0.742 0.666
38 254162_at AT4G24440 [transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)] 0.727 0.475
39 266256_at AT2G27710 [60S acidic ribosomal protein family] 0.727 1.367
40 247654_at AT5G59850 [Ribosomal protein S8 family protein] 0.723 0.838
41 245145_at AT2G45440 DHDPS2, dihydrodipicolinate synthase 2 0.722 0.966
42 251538_at AT3G58660 [Ribosomal protein L1p/L10e family] 0.707 0.848
43 264260_at AT1G09210 AtCRT1b, CRT1b, calreticulin 1b 0.694 0.200
44 252055_at AT3G52580 [Ribosomal protein S11 family protein] 0.682 1.078
45 256681_at AT3G52340 ATSPP2, SUCROSE-PHOSPHATASE 2, SPP2, sucrose-6F-phosphate phosphohydrolase 2 0.680 0.744
46 259403_at AT1G17745 PGDH, 3-phosphoglycerate dehydrogenase, PGDH2, phosphoglycerate dehydrogenase 2 0.677 0.363
47 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.672 0.851
48 251029_at AT5G02050 [Mitochondrial glycoprotein family protein] 0.670 0.915
49 251958_at AT3G53560 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.665 0.189
50 253492_at AT4G31810 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.662 0.622
51 265671_at AT2G32060 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.658 1.703
52 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.657 0.141
53 267230_at AT2G44080 ARL, ARGOS-like 0.654 0.445
54 246220_at AT4G37210 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.650 1.463
55 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.649 0.305
56 258410_at AT3G16780 [Ribosomal protein L19e family protein] 0.649 0.871
57 248614_at AT5G49560 [Putative methyltransferase family protein] 0.640 0.361
58 256442_at AT3G10930 unknown 0.639 -0.555
59 255657_at AT4G00810 [60S acidic ribosomal protein family] 0.636 1.372
60 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.631 -0.597
61 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.631 0.045
62 252625_at AT3G44750 ATHD2A, HD2A, HISTONE DEACETYLASE 2A, HDA3, histone deacetylase 3, HDT1 0.629 1.165
63 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.622 0.487
64 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.618 0.962
65 249466_at AT5G39740 OLI7, OLIGOCELLULA 7, RPL5B, ribosomal protein L5 B 0.611 0.272
66 248036_at AT5G55920 OLI2, OLIGOCELLULA 2 0.609 0.997
67 257177_at AT3G23490 CYN, cyanase 0.607 1.812
68 253383_at AT4G32900 [Peptidyl-tRNA hydrolase II (PTH2) family protein] 0.602 0.278
69 262766_at AT1G13160 [ARM repeat superfamily protein] 0.600 -0.060
70 261023_at AT1G12200 FMO, flavin monooxygenase 0.596 -0.365
71 253116_at AT4G35850 [Pentatricopeptide repeat (PPR) superfamily protein] 0.596 0.920
72 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.593 0.490
73 250670_at AT5G06860 ATPGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1, PGIP1, polygalacturonase inhibiting protein 1 0.591 0.046
74 248335_at AT5G52450 [MATE efflux family protein] 0.591 0.144
75 249227_at AT5G42180 PER64, peroxidase 64 -0.717 -0.175
76 266989_at AT2G39330 JAL23, jacalin-related lectin 23 -0.669 -0.191
77 255246_at AT4G05640 unknown -0.651 -1.001
78 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 -0.646 -0.877
79 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 -0.637 -0.412
80 262858_at AT1G14940 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.634 0.610
81 247663_at AT5G60110 APUM18, pumilio 18, PUM18, pumilio 18 -0.615 0.079
82 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 -0.613 -0.618
83 253113_at AT4G35985 [Senescence/dehydration-associated protein-related] -0.607 0.147
84 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A -0.606 -0.190
85 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 -0.556 0.717
86 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.554 0.467
87 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 -0.543 -0.347
88 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] -0.543 -0.792
89 260403_at AT1G69810 ATWRKY36, WRKY36, WRKY DNA-binding protein 36 -0.538 -0.818
90 250233_at AT5G13460 IQD11, IQ-domain 11 -0.529 0.151
91 263084_at AT2G27180 unknown -0.529 -0.404
92 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) -0.515 -0.299
93 247731_at AT5G59590 UGT76E2, UDP-glucosyl transferase 76E2 -0.511 0.304
94 263689_at AT1G26820 RNS3, ribonuclease 3 -0.504 0.108
95 249564_at AT5G38400 unknown -0.498 -0.996
96 246761_at AT5G27980 [Seed maturation protein] -0.495 0.160
97 256860_at AT3G23840 CER26-LIKE, CER26-LIKE -0.488 0.552
98 256668_at AT3G32190 unknown -0.486 -0.070
99 254311_at AT4G22440 unknown -0.484 -0.146
100 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA -0.480 -0.584
101 256435_at AT3G11180 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.477 -1.239
102 250770_at AT5G05390 LAC12, laccase 12 -0.477 0.343
103 265754_x_at AT2G10640 [CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.474 0.308
104 257421_at AT1G12030 unknown -0.471 0.229
105 260618_at AT1G53230 TCP3, TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 -0.463 0.532
106 246635_at AT1G31720 unknown -0.461 0.116
107 249209_at AT5G42620 [metalloendopeptidases] -0.460 -0.520
108 255918_at AT5G28570 unknown -0.457 -0.638
109 249852_at AT5G23270 ATSTP11, SUGAR TRANSPORTER 11, STP11, sugar transporter 11 -0.455 -0.355
110 257090_at AT3G20530 [Protein kinase superfamily protein] -0.450 0.117
111 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.449 -1.016
112 262805_at AT1G20900 AHL27, AT-hook motif nuclear-localized protein 27, ESC, ESCAROLA, ORE7, ORESARA 7 -0.449 -0.280
113 251292_at AT3G61920 unknown -0.446 -0.662
114 265080_at AT1G55570 sks12, SKU5 similar 12 -0.443 -0.706
115 260158_at AT1G79910 [Regulator of Vps4 activity in the MVB pathway protein] -0.442 -0.798
116 246783_at AT5G27360 SFP2 -0.436 0.233
117 246293_at AT3G56710 SIB1, sigma factor binding protein 1 -0.429 -0.826
118 258672_at AT3G08570 [Phototropic-responsive NPH3 family protein] -0.425 0.557
119 256662_at AT3G11980 FAR2, FATTY ACID REDUCTASE 2, MS2, MALE STERILITY 2 -0.424 -0.151
120 258726_at AT3G11745 unknown -0.423 0.139
121 251252_at AT3G62230 DAF1, DUO1-activated F-box 1 -0.422 -0.628
122 265300_at AT2G13950 [Cysteine/Histidine-rich C1 domain family protein] -0.422 -0.322
123 246826_at AT5G26310 UGT72E3 -0.421 -1.276
124 259884_at AT1G76390 PUB43, plant U-box 43 -0.420 -0.241
125 259650_at AT1G55290 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -0.418 -0.170
126 257900_at AT3G28420 [Putative membrane lipoprotein] -0.415 0.044
127 261441_at AT1G28470 ANAC010, NAC domain containing protein 10, NAC010, NAC domain containing protein 10, SND3, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3 -0.414 -0.040
128 254186_at AT4G24010 ATCSLG1, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, CSLG1, cellulose synthase like G1 -0.406 -0.731
129 264720_at AT1G70080 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.401 -0.823
130 248355_at AT5G52340 ATEXO70A2, exocyst subunit exo70 family protein A2, EXO70A2, exocyst subunit exo70 family protein A2 -0.397 -1.406
131 259961_at AT1G53700 PK3AT, PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG1, WAG 1 -0.394 0.128
132 245244_at AT1G44350 ILL6, IAA-leucine resistant (ILR)-like gene 6 -0.392 -0.486
133 254263_at AT4G23493 unknown -0.391 0.695
134 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase -0.390 0.851
135 258177_at AT3G21660 [UBX domain-containing protein] -0.389 -0.339
136 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.389 -0.615
137 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 -0.389 -0.099
138 257752_at AT3G18720 [F-box family protein] -0.389 -0.362
139 262031_x_at AT1G37160 [gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GI:4567296 from (Arabidopsis thaliana)] -0.388 -0.113
140 249476_at AT5G38910 [RmlC-like cupins superfamily protein] -0.387 -0.342
141 247880_at AT5G57780 P1R1, P1R1 -0.385 -0.971
142 247427_at AT5G62580 [ARM repeat superfamily protein] -0.382 0.188
143 253587_at AT4G30770 [Putative membrane lipoprotein] -0.377 -1.379
144 253501_at AT4G32010 HSI2-L1, HSL1, HSI2-like 1, VAL2, VP1/ABI3-LIKE 2 -0.372 0.065
145 265903_at AT2G25600 AKT6, SPIK, Shaker pollen inward K+ channel -0.372 -0.760
146 245567_at AT4G14630 GLP9, germin-like protein 9 -0.365 -0.617
147 247831_at AT5G58540 [Protein kinase superfamily protein] -0.365 -0.383