4.0:Information of module
Starch sheath 2 days NAA
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 5 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.065e-59
GO:0006412 translation BP 3.252e-50
GO:0032259 methylation BP 1.661e-43
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042546 cell wall biogenesis BP 3.718e-07
GO:0009834 plant-type secondary cell wall biogenesi... BP 1.997e-06
GO:0009832 plant-type cell wall biogenesis BP 1.325e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Starch sheath 2 days NAA		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 5 hrs Taking 70 mm of Stump (4dpg)
1 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 1.188 0.329
2 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 1.179 -0.398
3 256890_at AT3G23830 AtGRP4, GR-RBP4, GRP4, glycine-rich RNA-binding protein 4 1.107 0.570
4 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 1.054 0.213
5 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 1.044 0.019
6 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 1.032 -0.605
7 256794_at AT3G22230 [Ribosomal L27e protein family] 1.018 0.768
8 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.987 -1.123
9 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 0.975 -0.475
10 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.970 -0.841
11 258532_at AT3G06700 [Ribosomal L29e protein family] 0.925 1.913
12 251486_at AT3G59540 [Ribosomal L38e protein family] 0.918 0.336
13 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.884 -0.378
14 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.884 0.765
15 247607_at AT5G60960 PNM1, PPR protein localized to the nucleus and mitochondria 1 0.873 0.425
16 260668_at AT1G19530 unknown 0.866 -0.051
17 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.846 -0.048
18 262118_at AT1G02850 BGLU11, beta glucosidase 11 0.836 0.361
19 251738_at AT3G56150 ATEIF3C-1, ATTIF3C1, EIF3C, eukaryotic translation initiation factor 3C, EIF3C-1, TIF3C1 0.834 0.714
20 251476_at AT3G59670 unknown 0.817 0.122
21 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.816 -0.257
22 257730_at AT3G18420 [Protein prenylyltransferase superfamily protein] 0.807 0.457
23 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 0.804 0.489
24 261330_at AT1G44900 ATMCM2, MCM2, MINICHROMOSOME MAINTENANCE 2 0.799 1.064
25 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 0.799 -0.075
26 256983_at AT3G13470 Cpn60beta2, chaperonin-60beta2 0.794 0.884
27 266822_at AT2G44860 [Ribosomal protein L24e family protein] 0.792 0.697
28 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 0.791 0.019
29 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 0.779 1.241
30 251846_at AT3G54560 HTA11, histone H2A 11 0.777 1.214
31 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] 0.776 0.490
32 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 0.771 0.527
33 260235_at AT1G74560 NRP1, NAP1-related protein 1 0.770 -0.075
34 254355_at AT4G22380 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.754 0.538
35 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.750 0.870
36 245098_at AT2G40940 ERS, ETHYLENE RESPONSE SENSOR, ERS1, ethylene response sensor 1 0.748 0.148
37 249271_at AT5G41790 CIP1, COP1-interactive protein 1 0.742 0.489
38 254162_at AT4G24440 [transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)] 0.727 0.434
39 266256_at AT2G27710 [60S acidic ribosomal protein family] 0.727 1.382
40 247654_at AT5G59850 [Ribosomal protein S8 family protein] 0.723 0.877
41 245145_at AT2G45440 DHDPS2, dihydrodipicolinate synthase 2 0.722 0.648
42 251538_at AT3G58660 [Ribosomal protein L1p/L10e family] 0.707 0.675
43 264260_at AT1G09210 AtCRT1b, CRT1b, calreticulin 1b 0.694 0.366
44 252055_at AT3G52580 [Ribosomal protein S11 family protein] 0.682 1.105
45 256681_at AT3G52340 ATSPP2, SUCROSE-PHOSPHATASE 2, SPP2, sucrose-6F-phosphate phosphohydrolase 2 0.680 0.125
46 259403_at AT1G17745 PGDH, 3-phosphoglycerate dehydrogenase, PGDH2, phosphoglycerate dehydrogenase 2 0.677 0.755
47 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.672 0.457
48 251029_at AT5G02050 [Mitochondrial glycoprotein family protein] 0.670 0.748
49 251958_at AT3G53560 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.665 -0.203
50 253492_at AT4G31810 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.662 0.735
51 265671_at AT2G32060 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.658 1.749
52 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.657 0.444
53 267230_at AT2G44080 ARL, ARGOS-like 0.654 -0.028
54 246220_at AT4G37210 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.650 1.372
55 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.649 0.269
56 258410_at AT3G16780 [Ribosomal protein L19e family protein] 0.649 0.885
57 248614_at AT5G49560 [Putative methyltransferase family protein] 0.640 0.222
58 256442_at AT3G10930 unknown 0.639 -0.160
59 255657_at AT4G00810 [60S acidic ribosomal protein family] 0.636 1.408
60 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.631 -0.605
61 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.631 -0.187
62 252625_at AT3G44750 ATHD2A, HD2A, HISTONE DEACETYLASE 2A, HDA3, histone deacetylase 3, HDT1 0.629 1.072
63 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.622 1.112
64 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.618 0.058
65 249466_at AT5G39740 OLI7, OLIGOCELLULA 7, RPL5B, ribosomal protein L5 B 0.611 0.165
66 248036_at AT5G55920 OLI2, OLIGOCELLULA 2 0.609 0.905
67 257177_at AT3G23490 CYN, cyanase 0.607 1.286
68 253383_at AT4G32900 [Peptidyl-tRNA hydrolase II (PTH2) family protein] 0.602 -0.110
69 262766_at AT1G13160 [ARM repeat superfamily protein] 0.600 -0.101
70 261023_at AT1G12200 FMO, flavin monooxygenase 0.596 -0.898
71 253116_at AT4G35850 [Pentatricopeptide repeat (PPR) superfamily protein] 0.596 1.036
72 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.593 0.709
73 250670_at AT5G06860 ATPGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1, PGIP1, polygalacturonase inhibiting protein 1 0.591 0.444
74 248335_at AT5G52450 [MATE efflux family protein] 0.591 -0.009
75 249227_at AT5G42180 PER64, peroxidase 64 -0.717 0.196
76 266989_at AT2G39330 JAL23, jacalin-related lectin 23 -0.669 -0.144
77 255246_at AT4G05640 unknown -0.651 -0.637
78 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 -0.646 -0.772
79 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 -0.637 -0.044
80 262858_at AT1G14940 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.634 -0.680
81 247663_at AT5G60110 APUM18, pumilio 18, PUM18, pumilio 18 -0.615 0.195
82 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 -0.613 -0.172
83 253113_at AT4G35985 [Senescence/dehydration-associated protein-related] -0.607 0.578
84 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A -0.606 -0.157
85 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 -0.556 0.190
86 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.554 0.601
87 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 -0.543 -0.169
88 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] -0.543 -0.655
89 260403_at AT1G69810 ATWRKY36, WRKY36, WRKY DNA-binding protein 36 -0.538 0.006
90 250233_at AT5G13460 IQD11, IQ-domain 11 -0.529 0.693
91 263084_at AT2G27180 unknown -0.529 -0.366
92 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) -0.515 -0.370
93 247731_at AT5G59590 UGT76E2, UDP-glucosyl transferase 76E2 -0.511 0.041
94 263689_at AT1G26820 RNS3, ribonuclease 3 -0.504 0.802
95 249564_at AT5G38400 unknown -0.498 -0.888
96 246761_at AT5G27980 [Seed maturation protein] -0.495 0.264
97 256860_at AT3G23840 CER26-LIKE, CER26-LIKE -0.488 1.024
98 256668_at AT3G32190 unknown -0.486 0.246
99 254311_at AT4G22440 unknown -0.484 -0.267
100 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA -0.480 -0.253
101 256435_at AT3G11180 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.477 -1.199
102 250770_at AT5G05390 LAC12, laccase 12 -0.477 0.654
103 265754_x_at AT2G10640 [CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.474 0.250
104 257421_at AT1G12030 unknown -0.471 0.293
105 260618_at AT1G53230 TCP3, TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 -0.463 0.001
106 246635_at AT1G31720 unknown -0.461 0.153
107 249209_at AT5G42620 [metalloendopeptidases] -0.460 -0.509
108 255918_at AT5G28570 unknown -0.457 -0.390
109 249852_at AT5G23270 ATSTP11, SUGAR TRANSPORTER 11, STP11, sugar transporter 11 -0.455 -0.403
110 257090_at AT3G20530 [Protein kinase superfamily protein] -0.450 0.218
111 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.449 -0.877
112 262805_at AT1G20900 AHL27, AT-hook motif nuclear-localized protein 27, ESC, ESCAROLA, ORE7, ORESARA 7 -0.449 -0.548
113 251292_at AT3G61920 unknown -0.446 -0.389
114 265080_at AT1G55570 sks12, SKU5 similar 12 -0.443 -0.558
115 260158_at AT1G79910 [Regulator of Vps4 activity in the MVB pathway protein] -0.442 -0.395
116 246783_at AT5G27360 SFP2 -0.436 0.245
117 246293_at AT3G56710 SIB1, sigma factor binding protein 1 -0.429 -0.566
118 258672_at AT3G08570 [Phototropic-responsive NPH3 family protein] -0.425 0.880
119 256662_at AT3G11980 FAR2, FATTY ACID REDUCTASE 2, MS2, MALE STERILITY 2 -0.424 -0.136
120 258726_at AT3G11745 unknown -0.423 -0.421
121 251252_at AT3G62230 DAF1, DUO1-activated F-box 1 -0.422 -0.204
122 265300_at AT2G13950 [Cysteine/Histidine-rich C1 domain family protein] -0.422 -0.356
123 246826_at AT5G26310 UGT72E3 -0.421 -0.938
124 259884_at AT1G76390 PUB43, plant U-box 43 -0.420 -0.320
125 259650_at AT1G55290 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -0.418 -0.052
126 257900_at AT3G28420 [Putative membrane lipoprotein] -0.415 0.033
127 261441_at AT1G28470 ANAC010, NAC domain containing protein 10, NAC010, NAC domain containing protein 10, SND3, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3 -0.414 0.050
128 254186_at AT4G24010 ATCSLG1, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, CSLG1, cellulose synthase like G1 -0.406 -0.644
129 264720_at AT1G70080 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.401 -0.993
130 248355_at AT5G52340 ATEXO70A2, exocyst subunit exo70 family protein A2, EXO70A2, exocyst subunit exo70 family protein A2 -0.397 -1.049
131 259961_at AT1G53700 PK3AT, PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG1, WAG 1 -0.394 0.566
132 245244_at AT1G44350 ILL6, IAA-leucine resistant (ILR)-like gene 6 -0.392 -0.437
133 254263_at AT4G23493 unknown -0.391 0.851
134 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase -0.390 0.710
135 258177_at AT3G21660 [UBX domain-containing protein] -0.389 -0.400
136 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.389 -0.423
137 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 -0.389 -0.025
138 257752_at AT3G18720 [F-box family protein] -0.389 -0.281
139 262031_x_at AT1G37160 [gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GI:4567296 from (Arabidopsis thaliana)] -0.388 -0.016
140 249476_at AT5G38910 [RmlC-like cupins superfamily protein] -0.387 -0.048
141 247880_at AT5G57780 P1R1, P1R1 -0.385 -0.660
142 247427_at AT5G62580 [ARM repeat superfamily protein] -0.382 0.621
143 253587_at AT4G30770 [Putative membrane lipoprotein] -0.377 -1.262
144 253501_at AT4G32010 HSI2-L1, HSL1, HSI2-like 1, VAL2, VP1/ABI3-LIKE 2 -0.372 0.014
145 265903_at AT2G25600 AKT6, SPIK, Shaker pollen inward K+ channel -0.372 -0.575
146 245567_at AT4G14630 GLP9, germin-like protein 9 -0.365 -0.483
147 247831_at AT5G58540 [Protein kinase superfamily protein] -0.365 -0.528