4.0:Information of module
Starch sheath 2 days NAA
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.065e-59
GO:0006412 translation BP 3.252e-50
GO:0032259 methylation BP 1.661e-43
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042546 cell wall biogenesis BP 3.718e-07
GO:0009834 plant-type secondary cell wall biogenesi... BP 1.997e-06
GO:0009832 plant-type cell wall biogenesis BP 1.325e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Starch sheath 2 days NAA		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
1 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 1.188 0.306
2 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 1.179 -0.203
3 256890_at AT3G23830 AtGRP4, GR-RBP4, GRP4, glycine-rich RNA-binding protein 4 1.107 0.513
4 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 1.054 0.241
5 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 1.044 0.404
6 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 1.032 -0.565
7 256794_at AT3G22230 [Ribosomal L27e protein family] 1.018 0.719
8 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.987 -0.956
9 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 0.975 -0.525
10 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.970 -0.775
11 258532_at AT3G06700 [Ribosomal L29e protein family] 0.925 1.874
12 251486_at AT3G59540 [Ribosomal L38e protein family] 0.918 0.307
13 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.884 -0.520
14 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.884 0.775
15 247607_at AT5G60960 PNM1, PPR protein localized to the nucleus and mitochondria 1 0.873 0.394
16 260668_at AT1G19530 unknown 0.866 -0.079
17 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.846 -0.281
18 262118_at AT1G02850 BGLU11, beta glucosidase 11 0.836 0.379
19 251738_at AT3G56150 ATEIF3C-1, ATTIF3C1, EIF3C, eukaryotic translation initiation factor 3C, EIF3C-1, TIF3C1 0.834 0.689
20 251476_at AT3G59670 unknown 0.817 0.002
21 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.816 -0.244
22 257730_at AT3G18420 [Protein prenylyltransferase superfamily protein] 0.807 0.439
23 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 0.804 0.423
24 261330_at AT1G44900 ATMCM2, MCM2, MINICHROMOSOME MAINTENANCE 2 0.799 1.053
25 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 0.799 -0.051
26 256983_at AT3G13470 Cpn60beta2, chaperonin-60beta2 0.794 0.906
27 266822_at AT2G44860 [Ribosomal protein L24e family protein] 0.792 0.636
28 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 0.791 0.424
29 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 0.779 1.170
30 251846_at AT3G54560 HTA11, histone H2A 11 0.777 1.166
31 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] 0.776 0.592
32 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 0.771 0.420
33 260235_at AT1G74560 NRP1, NAP1-related protein 1 0.770 -0.139
34 254355_at AT4G22380 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.754 0.477
35 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.750 0.802
36 245098_at AT2G40940 ERS, ETHYLENE RESPONSE SENSOR, ERS1, ethylene response sensor 1 0.748 0.113
37 249271_at AT5G41790 CIP1, COP1-interactive protein 1 0.742 0.495
38 254162_at AT4G24440 [transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)] 0.727 0.410
39 266256_at AT2G27710 [60S acidic ribosomal protein family] 0.727 1.363
40 247654_at AT5G59850 [Ribosomal protein S8 family protein] 0.723 0.851
41 245145_at AT2G45440 DHDPS2, dihydrodipicolinate synthase 2 0.722 0.603
42 251538_at AT3G58660 [Ribosomal protein L1p/L10e family] 0.707 0.626
43 264260_at AT1G09210 AtCRT1b, CRT1b, calreticulin 1b 0.694 0.327
44 252055_at AT3G52580 [Ribosomal protein S11 family protein] 0.682 1.057
45 256681_at AT3G52340 ATSPP2, SUCROSE-PHOSPHATASE 2, SPP2, sucrose-6F-phosphate phosphohydrolase 2 0.680 0.161
46 259403_at AT1G17745 PGDH, 3-phosphoglycerate dehydrogenase, PGDH2, phosphoglycerate dehydrogenase 2 0.677 0.850
47 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.672 0.515
48 251029_at AT5G02050 [Mitochondrial glycoprotein family protein] 0.670 0.696
49 251958_at AT3G53560 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.665 -0.184
50 253492_at AT4G31810 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.662 0.714
51 265671_at AT2G32060 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.658 1.732
52 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.657 0.343
53 267230_at AT2G44080 ARL, ARGOS-like 0.654 -0.274
54 246220_at AT4G37210 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.650 1.364
55 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.649 0.246
56 258410_at AT3G16780 [Ribosomal protein L19e family protein] 0.649 0.904
57 248614_at AT5G49560 [Putative methyltransferase family protein] 0.640 0.164
58 256442_at AT3G10930 unknown 0.639 -0.465
59 255657_at AT4G00810 [60S acidic ribosomal protein family] 0.636 1.389
60 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.631 -0.648
61 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.631 -0.177
62 252625_at AT3G44750 ATHD2A, HD2A, HISTONE DEACETYLASE 2A, HDA3, histone deacetylase 3, HDT1 0.629 1.034
63 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.622 1.126
64 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.618 0.012
65 249466_at AT5G39740 OLI7, OLIGOCELLULA 7, RPL5B, ribosomal protein L5 B 0.611 0.154
66 248036_at AT5G55920 OLI2, OLIGOCELLULA 2 0.609 0.874
67 257177_at AT3G23490 CYN, cyanase 0.607 1.164
68 253383_at AT4G32900 [Peptidyl-tRNA hydrolase II (PTH2) family protein] 0.602 -0.140
69 262766_at AT1G13160 [ARM repeat superfamily protein] 0.600 -0.145
70 261023_at AT1G12200 FMO, flavin monooxygenase 0.596 -0.845
71 253116_at AT4G35850 [Pentatricopeptide repeat (PPR) superfamily protein] 0.596 1.031
72 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.593 0.831
73 250670_at AT5G06860 ATPGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1, PGIP1, polygalacturonase inhibiting protein 1 0.591 0.485
74 248335_at AT5G52450 [MATE efflux family protein] 0.591 -0.092
75 249227_at AT5G42180 PER64, peroxidase 64 -0.717 0.412
76 266989_at AT2G39330 JAL23, jacalin-related lectin 23 -0.669 -0.144
77 255246_at AT4G05640 unknown -0.651 -0.626
78 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 -0.646 -0.823
79 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 -0.637 -0.087
80 262858_at AT1G14940 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.634 -0.597
81 247663_at AT5G60110 APUM18, pumilio 18, PUM18, pumilio 18 -0.615 0.079
82 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 -0.613 -0.180
83 253113_at AT4G35985 [Senescence/dehydration-associated protein-related] -0.607 0.379
84 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A -0.606 -0.494
85 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 -0.556 0.249
86 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.554 0.658
87 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 -0.543 0.021
88 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] -0.543 -0.405
89 260403_at AT1G69810 ATWRKY36, WRKY36, WRKY DNA-binding protein 36 -0.538 0.072
90 250233_at AT5G13460 IQD11, IQ-domain 11 -0.529 0.576
91 263084_at AT2G27180 unknown -0.529 -0.333
92 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) -0.515 -0.392
93 247731_at AT5G59590 UGT76E2, UDP-glucosyl transferase 76E2 -0.511 0.157
94 263689_at AT1G26820 RNS3, ribonuclease 3 -0.504 0.699
95 249564_at AT5G38400 unknown -0.498 -0.884
96 246761_at AT5G27980 [Seed maturation protein] -0.495 0.250
97 256860_at AT3G23840 CER26-LIKE, CER26-LIKE -0.488 0.955
98 256668_at AT3G32190 unknown -0.486 0.200
99 254311_at AT4G22440 unknown -0.484 -0.165
100 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA -0.480 -0.360
101 256435_at AT3G11180 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.477 -1.140
102 250770_at AT5G05390 LAC12, laccase 12 -0.477 0.732
103 265754_x_at AT2G10640 [CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.474 0.302
104 257421_at AT1G12030 unknown -0.471 0.288
105 260618_at AT1G53230 TCP3, TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 -0.463 0.069
106 246635_at AT1G31720 unknown -0.461 0.190
107 249209_at AT5G42620 [metalloendopeptidases] -0.460 -0.534
108 255918_at AT5G28570 unknown -0.457 -0.580
109 249852_at AT5G23270 ATSTP11, SUGAR TRANSPORTER 11, STP11, sugar transporter 11 -0.455 -0.424
110 257090_at AT3G20530 [Protein kinase superfamily protein] -0.450 0.133
111 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.449 -0.927
112 262805_at AT1G20900 AHL27, AT-hook motif nuclear-localized protein 27, ESC, ESCAROLA, ORE7, ORESARA 7 -0.449 -0.589
113 251292_at AT3G61920 unknown -0.446 -0.455
114 265080_at AT1G55570 sks12, SKU5 similar 12 -0.443 -0.570
115 260158_at AT1G79910 [Regulator of Vps4 activity in the MVB pathway protein] -0.442 -0.233
116 246783_at AT5G27360 SFP2 -0.436 0.120
117 246293_at AT3G56710 SIB1, sigma factor binding protein 1 -0.429 -0.596
118 258672_at AT3G08570 [Phototropic-responsive NPH3 family protein] -0.425 0.928
119 256662_at AT3G11980 FAR2, FATTY ACID REDUCTASE 2, MS2, MALE STERILITY 2 -0.424 -0.022
120 258726_at AT3G11745 unknown -0.423 -0.473
121 251252_at AT3G62230 DAF1, DUO1-activated F-box 1 -0.422 -0.320
122 265300_at AT2G13950 [Cysteine/Histidine-rich C1 domain family protein] -0.422 -0.274
123 246826_at AT5G26310 UGT72E3 -0.421 -0.827
124 259884_at AT1G76390 PUB43, plant U-box 43 -0.420 -0.459
125 259650_at AT1G55290 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -0.418 -0.061
126 257900_at AT3G28420 [Putative membrane lipoprotein] -0.415 -0.083
127 261441_at AT1G28470 ANAC010, NAC domain containing protein 10, NAC010, NAC domain containing protein 10, SND3, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3 -0.414 0.003
128 254186_at AT4G24010 ATCSLG1, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, CSLG1, cellulose synthase like G1 -0.406 -0.617
129 264720_at AT1G70080 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.401 -0.928
130 248355_at AT5G52340 ATEXO70A2, exocyst subunit exo70 family protein A2, EXO70A2, exocyst subunit exo70 family protein A2 -0.397 -1.053
131 259961_at AT1G53700 PK3AT, PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG1, WAG 1 -0.394 0.563
132 245244_at AT1G44350 ILL6, IAA-leucine resistant (ILR)-like gene 6 -0.392 -0.425
133 254263_at AT4G23493 unknown -0.391 0.927
134 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase -0.390 0.746
135 258177_at AT3G21660 [UBX domain-containing protein] -0.389 -0.435
136 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.389 -0.359
137 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 -0.389 0.078
138 257752_at AT3G18720 [F-box family protein] -0.389 -0.206
139 262031_x_at AT1G37160 [gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GI:4567296 from (Arabidopsis thaliana)] -0.388 0.048
140 249476_at AT5G38910 [RmlC-like cupins superfamily protein] -0.387 -0.202
141 247880_at AT5G57780 P1R1, P1R1 -0.385 -0.345
142 247427_at AT5G62580 [ARM repeat superfamily protein] -0.382 0.655
143 253587_at AT4G30770 [Putative membrane lipoprotein] -0.377 -1.184
144 253501_at AT4G32010 HSI2-L1, HSL1, HSI2-like 1, VAL2, VP1/ABI3-LIKE 2 -0.372 0.028
145 265903_at AT2G25600 AKT6, SPIK, Shaker pollen inward K+ channel -0.372 -0.619
146 245567_at AT4G14630 GLP9, germin-like protein 9 -0.365 -0.522
147 247831_at AT5G58540 [Protein kinase superfamily protein] -0.365 -0.610