4.0:Information of module
Starch sheath 2 days MS incubation
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.154e-31
GO:0006412 translation BP 1.067e-27
GO:0043414 macromolecule methylation BP 9.596e-26
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1901576 organic substance biosynthetic process BP 3.810e-04
GO:0009058 biosynthetic process BP 4.038e-04
GO:0006351 transcription, DNA-templated BP 4.699e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Starch sheath 2 days MS incubation		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
1 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 1.304 -0.244
2 256787_at AT3G13790 ATBFRUCT1, ATCWINV1, ARABIDOPSIS THALIANA CELL WALL INVERTASE 1 1.221 1.581
3 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 1.126 -0.525
4 254818_at AT4G12470 AZI1, azelaic acid induced 1 1.086 -0.775
5 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 1.065 0.404
6 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] 0.978 0.624
7 260556_at AT2G43620 [Chitinase family protein] 0.964 0.980
8 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 0.936 -0.051
9 256890_at AT3G23830 AtGRP4, GR-RBP4, GRP4, glycine-rich RNA-binding protein 4 0.931 0.513
10 263380_at AT2G40200 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.914 -0.087
11 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.900 -0.010
12 254649_at AT4G18570 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.877 0.829
13 266168_at AT2G38870 [Serine protease inhibitor, potato inhibitor I-type family protein] 0.876 0.592
14 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.860 0.775
15 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.860 -0.959
16 245145_at AT2G45440 DHDPS2, dihydrodipicolinate synthase 2 0.853 0.603
17 256983_at AT3G13470 Cpn60beta2, chaperonin-60beta2 0.852 0.906
18 247607_at AT5G60960 PNM1, PPR protein localized to the nucleus and mitochondria 1 0.845 0.394
19 261460_at AT1G07880 ATMPK13 0.841 0.039
20 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.841 -0.086
21 247440_at AT5G62680 AtNPF2.11, GTR2, GLUCOSINOLATE TRANSPORTER-2, NPF2.11, NRT1/ PTR family 2.11 0.838 -0.936
22 258532_at AT3G06700 [Ribosomal L29e protein family] 0.837 1.874
23 251486_at AT3G59540 [Ribosomal L38e protein family] 0.835 0.307
24 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.831 0.632
25 246228_at AT4G36430 [Peroxidase superfamily protein] 0.821 0.959
26 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 0.820 1.170
27 255080_at AT4G09030 AGP10, arabinogalactan protein 10, ATAGP10 0.781 1.503
28 251846_at AT3G54560 HTA11, histone H2A 11 0.780 1.166
29 264262_at AT1G09200 H3.1, histone 3.1 0.753 0.771
30 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 0.746 0.094
31 263212_at AT1G10510 emb2004, embryo defective 2004 0.746 0.200
32 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.736 -0.281
33 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 0.728 0.423
34 265076_at AT1G55490 CPN60B, chaperonin 60 beta, Cpn60beta1, chaperonin-60beta1, LEN1, LESION INITIATION 1 0.724 0.934
35 266256_at AT2G27710 [60S acidic ribosomal protein family] 0.716 1.363
36 252272_at AT3G49670 BAM2, BARELY ANY MERISTEM 2 0.706 0.146
37 264689_at AT1G09900 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.704 -0.884
38 265671_at AT2G32060 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.704 1.732
39 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.699 0.819
40 259196_at AT3G03600 RPS2, ribosomal protein S2 0.698 0.425
41 251966_at AT3G53380 LecRK-VIII.1, L-type lectin receptor kinase VIII.1 0.686 0.390
42 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.684 0.246
43 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 0.674 0.067
44 251476_at AT3G59670 unknown 0.673 0.002
45 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.671 0.254
46 264438_at AT1G27400 [Ribosomal protein L22p/L17e family protein] 0.659 1.534
47 253566_at AT4G31210 [DNA topoisomerase, type IA, core] 0.655 0.175
48 247654_at AT5G59850 [Ribosomal protein S8 family protein] 0.647 0.851
49 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 0.645 0.420
50 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.643 0.012
51 251029_at AT5G02050 [Mitochondrial glycoprotein family protein] 0.642 0.696
52 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor 0.636 0.731
53 247268_at AT5G64080 AtXYP1, XYP1, xylogen protein 1 0.635 0.286
54 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.635 0.171
55 253666_at AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 -1.000 -0.741
56 245076_at AT2G23170 GH3.3 -0.759 0.239
57 253010_at AT4G37750 ANT, AINTEGUMENTA, CKC, CKC1, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, DRG, DRAGON -0.644 -0.493
58 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 -0.638 -0.131
59 262122_at AT1G02790 PGA4, polygalacturonase 4 -0.610 -0.236
60 259996_at AT1G67910 unknown -0.603 -0.403
61 262438_at AT1G47410 unknown -0.597 0.105
62 255246_at AT4G05640 unknown -0.597 -0.626
63 253501_at AT4G32010 HSI2-L1, HSL1, HSI2-like 1, VAL2, VP1/ABI3-LIKE 2 -0.556 0.028
64 257615_at AT3G26510 [Octicosapeptide/Phox/Bem1p family protein] -0.530 -0.219
65 258797_at AT3G04730 IAA16, indoleacetic acid-induced protein 16 -0.499 1.188
66 258672_at AT3G08570 [Phototropic-responsive NPH3 family protein] -0.492 0.928
67 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] -0.490 -0.405
68 267305_at AT2G30070 ATKT1, potassium transporter 1, ATKT1P, ATKUP1, KT1, potassium transporter 1, KUP1, POTASSIUM UPTAKE TRANSPORTER 1 -0.489 0.425
69 256435_at AT3G11180 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.488 -1.140
70 260242_at AT1G63650 AtEGL3, ATMYC-2, EGL1, EGL3, ENHANCER OF GLABRA 3 -0.486 -0.055
71 253588_at AT4G30790 [INVOLVED IN: autophagy] -0.478 -0.339
72 264083_at AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 -0.464 0.363
73 248801_at AT5G47370 HAT2 -0.463 0.130
74 250240_at AT5G13590 unknown -0.457 -0.060
75 258503_at AT3G02500 unknown -0.456 -0.815
76 249447_at AT5G39400 ATPTEN1, PTEN1, Phosphatase and TENsin homolog deleted on chromosome ten 1 -0.456 -0.883
77 261453_at AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 -0.454 -0.401
78 262700_at AT1G76020 [Thioredoxin superfamily protein] -0.444 -0.856
79 258726_at AT3G11745 unknown -0.444 -0.473
80 266111_at AT2G02061 [Nucleotide-diphospho-sugar transferase family protein] -0.442 -0.235
81 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.440 -0.285
82 262171_at AT1G74950 JAZ2, JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY10B -0.420 -0.099
83 251196_at AT3G62950 [Thioredoxin superfamily protein] -0.420 -0.479
84 264430_at AT1G61680 ATTPS14, TERPENE SYNTHASE 14, TPS14, terpene synthase 14 -0.407 -0.101
85 249306_at AT5G41400 [RING/U-box superfamily protein] -0.406 -0.534
86 256872_at AT3G26490 [Phototropic-responsive NPH3 family protein] -0.401 0.234
87 253038_at AT4G37790 HAT22 -0.380 -0.330
88 266423_at AT2G41340 RPB5D, RNA polymerase II fifth largest subunit, D -0.378 -0.696
89 253966_at AT4G26520 AtFBA7, FBA7, fructose-bisphosphate aldolase 7 -0.377 -0.499
90 262228_at AT1G68690 AtPERK9, proline-rich extensin-like receptor kinase 9, PERK9, proline-rich extensin-like receptor kinase 9 -0.377 0.072
91 245416_at AT4G17350 unknown -0.375 0.002
92 264826_at AT1G03410 2A6 -0.372 -0.541
93 262031_x_at AT1G37160 [gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GI:4567296 from (Arabidopsis thaliana)] -0.368 0.048
94 259535_at AT1G12280 SUMM2, suppressor of mkk1 mkk2 2 -0.364 -0.826
95 250216_at AT5G14090 AtLAZY1, LAZY1, LAZY 1 -0.353 0.016
96 251448_at AT3G59845 [Zinc-binding dehydrogenase family protein] -0.350 0.077
97 252200_at AT3G50280 [HXXXD-type acyl-transferase family protein] -0.346 -0.976
98 261922_at AT1G65890 AAE12, acyl activating enzyme 12 -0.344 -0.879
99 250365_at AT5G11410 [Protein kinase superfamily protein] -0.341 -0.204
100 259000_at AT3G01860 unknown -0.341 0.219
101 255854_at AT1G67050 unknown -0.340 -0.177
102 246999_at AT5G67440 MEL2, MAB4/ENP/NPY1-LIKE 2, NPY3, NAKED PINS IN YUC MUTANTS 3 -0.337 -0.727
103 249093_at AT5G43880 TRM21, TON1 Recruiting Motif 21 -0.328 0.380
104 264788_at AT2G17880 DJC24, DNA J protein C24 -0.327 -0.005
105 264828_at AT1G03380 ATATG18G, homolog of yeast autophagy 18 (ATG18) G, ATG18G, homolog of yeast autophagy 18 (ATG18) G -0.322 -0.386
106 249647_at AT5G37040 [F-box family protein] -0.320 -0.685
107 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -0.313 0.006