4.0:Information of module
xrn4-5 flower
In comparison with seedling 12h after Gamma WT help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0000096 sulfur amino acid metabolic process BP 9.268e-04
GO:0010075 regulation of meristem growth BP 1.049e-03
GO:0035266 meristem growth BP 1.412e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 5.961e-06
GO:0009451 RNA modification BP 1.375e-04
GO:2000026 regulation of multicellular organismal d... BP 1.626e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
xrn4-5 flower		 Log2 signal ratio
seedling 12h after Gamma WT
1 248377_at AT5G51720 At-NEET, NEET, NEET group protein 0.517 -0.624
2 251109_at AT5G01600 ATFER1, ARABIDOPSIS THALIANA FERRETIN 1, FER1, ferretin 1 0.388 0.017
3 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.324 0.023
4 255645_at AT4G00880 SAUR31, SMALL AUXIN UPREGULATED RNA 31 0.213 0.189
5 259704_at AT1G77680 [Ribonuclease II/R family protein] 0.207 0.128
6 246066_at AT5G19400 SMG7 0.207 0.058
7 260268_at AT1G68490 unknown 0.193 0.079
8 248592_at AT5G49280 [hydroxyproline-rich glycoprotein family protein] 0.186 0.042
9 259871_at AT1G76800 [Vacuolar iron transporter (VIT) family protein] 0.177 -0.041
10 248276_at AT5G53550 ATYSL3, YELLOW STRIPE LIKE 3, YSL3, YELLOW STRIPE like 3 0.177 -0.141
11 256193_at AT1G30200 [F-box family protein] 0.165 -0.042
12 253455_at AT4G32020 unknown 0.160 -0.016
13 257295_at AT3G17420 GPK1, glyoxysomal protein kinase 1 0.155 0.235
14 266770_at AT2G03090 ATEXP15, ATEXPA15, expansin A15, ATHEXP ALPHA 1.3, EXP15, EXPANSIN 15, EXPA15, expansin A15 0.152 -0.003
15 265291_at AT2G22720 [SPT2 chromatin protein] 0.151 -0.035
16 249261_at AT5G41710 [Mutator-like transposase family, has a 6.2e-18 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.141 0.028
17 258938_at AT3G10080 [RmlC-like cupins superfamily protein] 0.138 0.028
18 259984_at AT1G76460 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.138 -0.010
19 253141_at AT4G35440 ATCLC-E, CLC-E, chloride channel E, CLCE, CHLORIDE CHANNEL E 0.137 -0.043
20 261863_at AT1G50630 unknown 0.134 -0.028
21 245078_at AT2G23340 DEAR3, DREB and EAR motif protein 3 0.130 0.223
22 255626_at AT4G00780 [TRAF-like family protein] 0.129 -0.027
23 250424_at AT5G10550 GTE2, global transcription factor group E2 0.126 -0.011
24 250372_at AT5G11460 unknown 0.126 0.562
25 248166_at AT5G54520 [Transducin/WD40 repeat-like superfamily protein] 0.126 -0.154
26 256976_at AT3G21020 [copia-like retrotransposon family, has a 5.4e-14 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] 0.126 0.123
27 254108_at AT4G25230 RIN2, RPM1 interacting protein 2 0.125 0.015
28 247735_at AT5G59440 ATTMPK.1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, ATTMPK.2, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ZEU1, ZEUS1 0.124 -0.012
29 245282_at AT4G14990 [Topoisomerase II-associated protein PAT1] 0.123 -0.029
30 254632_at AT4G18630 unknown 0.123 0.311
31 257675_at AT3G20310 ATERF-7, ATERF7, ERF7, ethylene response factor 7 0.121 -0.083
32 253270_at AT4G34160 CYCD3, CYCD3;1, CYCLIN D3;1 0.121 -0.029
33 267382_at AT2G44300 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.121 0.134
34 267295_at AT2G23800 GGPS2, geranylgeranyl pyrophosphate synthase 2, GGPS5, GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5 -0.526 -0.044
35 260228_at AT1G74540 CYP98A8, cytochrome P450, family 98, subfamily A, polypeptide 8 -0.385 0.062
36 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 -0.373 0.071
37 250904_at AT5G03620 [Subtilisin-like serine endopeptidase family protein] -0.281 0.008
38 260233_at AT1G74550 CYP98A9, cytochrome P450, family 98, subfamily A, polypeptide 9 -0.267 0.095
39 246592_at AT5G14890 [NHL domain-containing protein] -0.176 0.013
40 254211_at AT4G23570 SGT1A -0.174 -0.210
41 266589_at AT2G46250 [myosin heavy chain-related] -0.156 -0.107
42 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.155 -0.208
43 247567_at AT5G61190 [putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain] -0.152 0.018
44 259719_at AT1G61070 LCR66, low-molecular-weight cysteine-rich 66, PDF2.4, PLANT DEFENSIN 2.4 -0.146 0.011
45 250294_at AT5G13380 [Auxin-responsive GH3 family protein] -0.144 0.005
46 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 -0.140 0.009
47 258140_at AT3G24503 ALDH1A, aldehyde dehydrogenase 1A, ALDH2C4, aldehyde dehydrogenase 2C4, REF1, REDUCED EPIDERMAL FLUORESCENCE1 -0.140 0.030
48 260143_at AT1G71880 ATSUC1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, SUC1, sucrose-proton symporter 1 -0.135 0.009
49 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.132 -0.053
50 250635_at AT5G07510 ATGRP-4, ARABIDOPSIS THALIANA GLYCINE-RICH PROTEIN 4, ATGRP14, ARABIDOPSIS THALIANA GLYCINE-RICH PROTEIN 14, GRP-4, GLYCINE-RICH PROTEIN 4, GRP14, glycine-rich protein 14 -0.127 -0.096
51 246963_at AT5G24820 [Eukaryotic aspartyl protease family protein] -0.126 0.033
52 266325_at AT2G46630 unknown -0.125 0.168
53 254459_at AT4G21200 ATGA2OX8, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, GA2OX8, gibberellin 2-oxidase 8 -0.124 0.008
54 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 -0.120 -0.176
55 245246_at AT1G44224 [ECA1 gametogenesis related family protein] -0.118 -0.025
56 263195_at AT1G36150 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.118 0.038
57 251455_at AT3G60100 CSY5, citrate synthase 5 -0.114 0.165
58 250281_at AT5G13240 [transcription regulators] -0.112 0.050
59 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 -0.111 -0.397
60 256860_at AT3G23840 CER26-LIKE, CER26-LIKE -0.103 -0.208
61 251641_at AT3G57470 [Insulinase (Peptidase family M16) family protein] -0.101 0.075
62 258623_at AT3G02790 MBS1, METHYLENE BLUE SENSITIVITY 1 -0.099 -0.029
63 249650_at AT5G37055 ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING -0.097 -0.011
64 249029_at AT5G44870 LAZ5, LAZARUS 5, TTR1, tolerance to Tobacco ringspot virus 1 -0.094 -0.039
65 265379_at AT2G18340 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.093 -0.056