4.0:Information of module
35S:VND7-VP16-GR+CHX
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010413 glucuronoxylan metabolic process BP 8.222e-09
GO:0045491 xylan metabolic process BP 9.176e-09
GO:0045492 xylan biosynthetic process BP 9.176e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016109 tetraterpenoid biosynthetic process BP 1.129e-04
GO:0016117 carotenoid biosynthetic process BP 1.129e-04
GO:0016108 tetraterpenoid metabolic process BP 1.279e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
35S:VND7-VP16-GR+CHX		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 260173_at AT1G71930 ANAC030, Arabidopsis NAC domain containing protein 30, VND7, vascular related NAC-domain protein 7 1.515 -0.144
2 260333_at AT1G70500 [Pectin lyase-like superfamily protein] 0.583 0.242
3 263629_at AT2G04850 [Auxin-responsive family protein] 0.505 -0.230
4 253191_at AT4G35350 XCP1, xylem cysteine peptidase 1 0.459 -0.103
5 251297_at AT3G62020 GLP10, germin-like protein 10 0.353 -0.178
6 251093_at AT5G01360 TBL3, TRICHOME BIREFRINGENCE-LIKE 3 0.331 -0.125
7 252006_at AT3G52820 ATPAP22, PURPLE ACID PHOSPHATASE 22, PAP22, purple acid phosphatase 22 0.296 0.292
8 259963_at AT1G53660 [nodulin MtN21 /EamA-like transporter family protein] 0.250 0.072
9 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 0.234 0.383
10 251739_at AT3G56170 CAN, Ca-2+ dependent nuclease, CAN1, calcium dependent nuclease 1 0.224 0.264
11 247269_at AT5G64210 AOX2, alternative oxidase 2 0.195 -0.122
12 256803_at AT3G20960 CYP705A33, cytochrome P450, family 705, subfamily A, polypeptide 33 0.184 0.378
13 261399_at AT1G79620 [Leucine-rich repeat protein kinase family protein] 0.180 -0.063
14 265161_at AT1G30900 BP80-3;3, binding protein of 80 kDa 3;3, VSR3;3, VACUOLAR SORTING RECEPTOR 3;3, VSR6, VACUOLAR SORTING RECEPTOR 6 0.162 -0.122
15 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.124 -0.274
16 245947_at AT5G19530 ACL5, ACAULIS 5 -0.099 0.031
17 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.099 0.108
18 258256_at AT3G26890 unknown -0.095 -0.155
19 250017_at AT5G18140 DJC69, DNA J protein A69 -0.095 -0.247
20 248541_at AT5G50180 [Protein kinase superfamily protein] -0.087 -0.018
21 247278_at AT5G64380 [Inositol monophosphatase family protein] -0.087 -0.397
22 265060_at AT1G52150 ATHB-15, ATHB15, CNA, CORONA, ICU4, INCURVATA 4 -0.084 0.046
23 249709_at AT5G35670 iqd33, IQ-domain 33 -0.080 0.083
24 267535_at AT2G41940 ZFP8, zinc finger protein 8 -0.071 -0.394
25 265967_at AT2G37450 UMAMIT13, Usually multiple acids move in and out Transporters 13 -0.068 -0.591
26 252975_s_at AT4G38430 ATROPGEF1, ROPGEF1, ROP (rho of plants) guanine nucleotide exchange factor 1 -0.066 -0.227
27 264007_at AT2G21140 ATPRP2, proline-rich protein 2, PRP2, proline-rich protein 2 -0.063 -0.012