4.0:Information of module
Pseudomonas
In comparison with Dark 6h ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0048573 photoperiodism, flowering BP 4.992e-09
GO:0009648 photoperiodism BP 9.583e-09
GO:0006635 fatty acid beta-oxidation BP 1.613e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044711 single-organism biosynthetic process BP 8.248e-19
GO:0044281 small molecule metabolic process BP 1.399e-18
GO:0044710 single-organism metabolic process BP 7.066e-17
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Pseudomonas		 Log2 signal ratio
Dark 6h ivd
1 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 0.439 6.613
2 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 0.415 1.665
3 257315_at AT3G30775 AT-POX, ATPDH, ATPOX, ARABIDOPSIS THALIANA PROLINE OXIDASE, ERD5, EARLY RESPONSIVE TO DEHYDRATION 5, PDH1, proline dehydrogenase 1, PRO1, PRODH, PROLINE DEHYDROGENASE 0.400 5.743
4 251494_at AT3G59350 [Protein kinase superfamily protein] 0.398 1.381
5 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.311 6.888
6 263118_at AT1G03090 MCCA 0.279 5.374
7 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 0.272 1.570
8 264788_at AT2G17880 DJC24, DNA J protein C24 0.271 3.353
9 264467_at AT1G10140 [Uncharacterised conserved protein UCP031279] 0.253 3.263
10 249174_at AT5G42900 COR27, cold regulated gene 27 0.249 -0.139
11 253827_at AT4G28085 unknown 0.249 1.889
12 254016_at AT4G26150 CGA1, cytokinin-responsive gata factor 1, GATA22, GATA TRANSCRIPTION FACTOR 22, GNL, GNC-LIKE 0.247 0.046
13 267532_at AT2G42040 unknown 0.246 2.185
14 261375_at AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 0.240 0.551
15 252570_at AT3G45300 ATIVD, IVD, isovaleryl-CoA-dehydrogenase, IVDH, ISOVALERYL-COA-DEHYDROGENASE 0.233 5.256
16 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] 0.233 0.227
17 256060_at AT1G07050 [CCT motif family protein] 0.231 1.484
18 250580_at AT5G07440 GDH2, glutamate dehydrogenase 2 0.225 5.732
19 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 0.222 6.424
20 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 0.221 1.241
21 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 0.221 1.958
22 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] 0.218 5.075
23 259982_at AT1G76410 ATL8 0.215 4.726
24 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.213 2.468
25 245076_at AT2G23170 GH3.3 0.212 1.204
26 256965_at AT3G13450 DIN4, DARK INDUCIBLE 4 0.212 4.716
27 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 0.211 -3.103
28 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] 0.207 6.896
29 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.201 4.557
30 264561_at AT1G55810 UKL3, uridine kinase-like 3 0.199 2.793
31 249847_at AT5G23210 SCPL34, serine carboxypeptidase-like 34 0.198 0.758
32 264551_at AT1G09460 [Carbohydrate-binding X8 domain superfamily protein] 0.197 3.369
33 250936_at AT5G03120 unknown 0.197 -1.984
34 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 0.197 3.324
35 259103_at AT3G11690 unknown 0.195 3.004
36 266984_at AT2G39570 ACR9, ACT domain repeats 9 0.194 2.064
37 246018_at AT5G10695 unknown 0.192 1.925
38 258227_at AT3G15620 UVR3, UV REPAIR DEFECTIVE 3 0.190 3.129
39 261851_at AT1G50460 ATHKL1, HKL1, hexokinase-like 1 0.190 0.623
40 262552_at AT1G31350 KUF1, KAR-UP F-box 1 0.181 0.488
41 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 0.178 2.062
42 265771_at AT2G48030 [DNAse I-like superfamily protein] 0.177 1.098
43 255625_at AT4G01120 ATBZIP54, BASIC REGION/LEUCINE ZIPPER MOTIF 5, GBF2, G-box binding factor 2 0.176 2.928
44 253571_at AT4G31000 [Calmodulin-binding protein] 0.176 -1.220
45 257990_at AT3G19860 bHLH121, basic Helix-Loop-Helix 121 0.175 1.167
46 262910_at AT1G59710 unknown 0.173 0.600
47 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.173 3.359
48 247128_at AT5G66110 HIPP27, heavy metal associated isoprenylated plant protein 27 0.169 2.275
49 248744_at AT5G48250 BBX8, B-box domain protein 8 0.169 1.954
50 258608_at AT3G03020 unknown 0.167 1.095
51 250664_at AT5G07080 [HXXXD-type acyl-transferase family protein] 0.165 0.128
52 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 0.165 0.677
53 259502_at AT1G15670 KFB01, Kelch repeat F-box 1, KMD2, KISS ME DEADLY 2 0.165 2.506
54 246396_at AT1G58180 ATBCA6, A. THALIANA BETA CARBONIC ANHYDRASE 6, BCA6, beta carbonic anhydrase 6 0.164 3.327
55 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 0.163 7.361
56 263460_at AT2G31810 [ACT domain-containing small subunit of acetolactate synthase protein] 0.162 2.772
57 253802_at AT4G28180 unknown 0.162 1.586
58 257654_at AT3G13310 DJC66, DNA J protein C66 0.162 3.573
59 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 0.161 1.957
60 255506_at AT4G02130 GATL6, galacturonosyltransferase-like 6, LGT10 0.160 -0.385
61 264815_at AT1G03620 [ELMO/CED-12 family protein] 0.159 2.329
62 261211_at AT1G12780 ATUGE1, A. THALIANA UDP-GLC 4-EPIMERASE 1, UGE1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 0.159 3.679
63 246843_at AT5G26740 unknown 0.158 2.650
64 254197_at AT4G24040 ATTRE1, TRE1, trehalase 1 0.158 3.036
65 248179_at AT5G54380 THE1, THESEUS1 0.158 -1.488
66 247266_at AT5G64570 ATBXL4, ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, XYL4, beta-D-xylosidase 4 0.158 1.932
67 253829_at AT4G28040 UMAMIT33, Usually multiple acids move in and out Transporters 33 0.157 6.498
68 260536_at AT2G43400 ETFQO, electron-transfer flavoprotein:ubiquinone oxidoreductase 0.157 3.628
69 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.156 3.821
70 248193_at AT5G54080 AtHGO, HGO, homogentisate 1,2-dioxygenase 0.156 4.028
71 250032_at AT5G18170 GDH1, glutamate dehydrogenase 1 0.156 3.100
72 267279_at AT2G19460 unknown 0.156 0.785
73 248796_at AT5G47180 [Plant VAMP (vesicle-associated membrane protein) family protein] 0.155 1.553
74 252173_at AT3G50650 [GRAS family transcription factor] 0.152 1.367
75 247123_at AT5G66050 [Wound-responsive family protein] 0.150 2.038
76 251791_at AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 0.149 2.291
77 247954_at AT5G56870 BGAL4, beta-galactosidase 4 0.149 4.846
78 264763_at AT1G61450 unknown 0.149 0.137
79 260279_at AT1G80420 ATXRCC1, XRCC1, homolog of X-ray repair cross complementing 1 0.149 2.251
80 260988_at AT1G53570 MAP3KA, mitogen-activated protein kinase kinase kinase 3, MAPKKK3, MAP KINASE KINASE KINASE 3 0.148 0.987
81 262525_at AT1G17060 CHI2, CHIBI 2, CYP72C1, cytochrome p450 72c1, SHK1, SHRINK 1, SOB7, SUPPRESSOR OF PHYB-4 7 0.148 0.070
82 262060_at AT1G80170 [Pectin lyase-like superfamily protein] 0.147 0.799
83 247183_at AT5G65440 unknown 0.147 0.254
84 267628_at AT2G42280 AKS3, ABA-responsive kinase substrate 3, FBH4, FLOWERING BHLH 4 0.147 1.557
85 250809_at AT5G05140 [Transcription elongation factor (TFIIS) family protein] 0.146 1.668
86 264001_at AT2G22420 [Peroxidase superfamily protein] 0.145 -1.355
87 261253_at AT1G05840 [Eukaryotic aspartyl protease family protein] 0.142 1.652
88 247835_at AT5G57910 unknown 0.141 2.635
89 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 0.141 3.385
90 258527_at AT3G06850 BCE2, DIN3, DARK INDUCIBLE 3, LTA1 0.140 4.341
91 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 -0.381 -5.595
92 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -0.363 -3.210
93 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 -0.342 -1.664
94 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 -0.320 -3.386
95 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 -0.318 -4.886
96 247760_at AT5G59130 [Subtilase family protein] -0.307 -3.616
97 250561_at AT5G08030 AtGDPD6, GDPD6, glycerophosphodiester phosphodiesterase 6 -0.306 -4.117
98 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.303 -2.294
99 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.298 1.095
100 263739_at AT2G21320 BBX18, B-box domain protein 18 -0.297 -4.112
101 259348_at AT3G03770 [Leucine-rich repeat protein kinase family protein] -0.293 -3.437
102 251058_at AT5G01790 unknown -0.291 -2.810
103 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 -0.290 0.597
104 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 -0.284 -5.621
105 251713_at AT3G56080 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.279 -2.790
106 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 -0.278 1.824
107 248467_at AT5G50800 AtSWEET13, SWEET13 -0.275 -0.831
108 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 -0.272 -6.952
109 264931_at AT1G60590 [Pectin lyase-like superfamily protein] -0.267 -7.016
110 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] -0.267 0.604
111 262935_at AT1G79410 AtOCT5, organic cation/carnitine transporter5, OCT5, organic cation/carnitine transporter5 -0.257 -2.291
112 265443_at AT2G20750 ATEXPB1, expansin B1, ATHEXP BETA 1.5, EXPB1, expansin B1 -0.247 -4.397
113 251024_at AT5G02180 [Transmembrane amino acid transporter family protein] -0.247 -0.561
114 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 -0.243 -2.554
115 256603_at AT3G28270 unknown -0.237 -4.885
116 245277_at AT4G15550 IAGLU, indole-3-acetate beta-D-glucosyltransferase -0.234 -2.400
117 249059_at AT5G44530 [Subtilase family protein] -0.234 -3.435
118 245676_at AT1G56670 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.227 -2.960
119 263452_at AT2G22190 TPPE, trehalose-6-phosphate phosphatase E -0.222 -0.054
120 248028_at AT5G55620 unknown -0.222 -3.957
121 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -0.219 -1.666
122 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 -0.219 2.700
123 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.217 -2.280
124 251309_at AT3G61220 SDR1, short-chain dehydrogenase/reductase 1 -0.214 -4.198
125 246998_at AT5G67370 CGLD27, CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 -0.201 -2.493
126 258181_at AT3G21670 AtNPF6.4, NPF6.4, NRT1/ PTR family 6.4 -0.201 -2.423
127 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 -0.200 -0.352
128 252911_at AT4G39510 CYP96A12, cytochrome P450, family 96, subfamily A, polypeptide 12 -0.199 -4.138
129 250985_at AT5G02830 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.198 -2.576
130 259736_at AT1G64390 AtGH9C2, glycosyl hydrolase 9C2, GH9C2, glycosyl hydrolase 9C2 -0.197 -3.784
131 246700_at AT5G28030 DES1, L-cysteine desulfhydrase 1 -0.193 0.247
132 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 -0.192 -1.406
133 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue -0.192 -3.958
134 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 -0.191 1.418
135 264745_at AT1G62180 5'adenylylphosphosulfate reductase 2 -0.186 -5.087
136 267538_at AT2G41870 [Remorin family protein] -0.184 -0.064
137 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 -0.184 -2.697
138 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 -0.181 1.326
139 260696_at AT1G32520 unknown -0.178 -2.005
140 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.177 -3.078
141 257272_at AT3G28130 UMAMIT44, Usually multiple acids move in and out Transporters 44 -0.172 -0.761
142 261804_at AT1G30530 UGT78D1, UDP-glucosyl transferase 78D1 -0.171 -2.759
143 251005_at AT5G02590 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.169 -0.453
144 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -0.168 -6.106
145 261319_at AT1G53090 SPA4, SPA1-related 4 -0.167 -2.124
146 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 -0.164 -2.538
147 255032_at AT4G09500 [UDP-Glycosyltransferase superfamily protein] -0.162 1.876
148 255278_at AT4G04940 [transducin family protein / WD-40 repeat family protein] -0.158 -0.974
149 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.157 -1.652
150 262526_at AT1G17050 AtSPS2, SPS2, solanesyl diphosphate synthase 2 -0.157 -3.825
151 261834_at AT1G10640 [Pectin lyase-like superfamily protein] -0.156 -3.606
152 245965_at AT5G19730 [Pectin lyase-like superfamily protein] -0.156 -4.808
153 256673_at AT3G52370 FLA15, FASCICLIN-like arabinogalactan protein 15 precursor -0.154 -4.896
154 248961_at AT5G45650 [subtilase family protein] -0.153 -0.778
155 245936_at AT5G19850 [alpha/beta-Hydrolases superfamily protein] -0.153 -2.971
156 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a -0.152 0.559
157 250099_at AT5G17300 RVE1, REVEILLE 1 -0.150 -2.608
158 252534_at AT3G46130 ATMYB48, myb domain protein 48, ATMYB48-1, ATMYB48-2, ATMYB48-3, MYB48, myb domain protein 48 -0.148 -4.132
159 246468_at AT5G17050 UGT78D2, UDP-glucosyl transferase 78D2 -0.147 -3.011
160 260601_at AT1G55910 ZIP11, zinc transporter 11 precursor -0.145 -1.887
161 246249_at AT4G36680 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.144 0.409
162 255694_at AT4G00050 UNE10, unfertilized embryo sac 10 -0.143 -5.580
163 257916_at AT3G23210 bHLH34, basic Helix-Loop-Helix 34 -0.143 -1.753
164 263777_at AT2G46450 ATCNGC12, cyclic nucleotide-gated channel 12, CNGC12, cyclic nucleotide-gated channel 12 -0.142 -2.417
165 247323_at AT5G64170 LNK1, night light-inducible and clock-regulated 1 -0.142 -0.874
166 247351_at AT5G63790 ANAC102, NAC domain containing protein 102, NAC102, NAC domain containing protein 102 -0.142 0.496
167 260676_at AT1G19450 [Major facilitator superfamily protein] -0.140 -3.106
168 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.139 -2.848
169 247549_at AT5G61420 AtMYB28, HAG1, HIGH ALIPHATIC GLUCOSINOLATE 1, MYB28, myb domain protein 28, PMG1, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1 -0.139 -3.982
170 247716_at AT5G59350 unknown -0.139 -0.631
171 251811_at AT3G54990 SMZ, SCHLAFMUTZE -0.138 0.795
172 247118_at AT5G65890 ACR1, ACT domain repeat 1 -0.137 -0.150
173 253915_at AT4G27280 [Calcium-binding EF-hand family protein] -0.137 1.376
174 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 -0.136 2.535
175 260135_at AT1G66400 CML23, calmodulin like 23 -0.136 -0.770
176 252639_at AT3G44550 FAR5, fatty acid reductase 5 -0.135 1.056
177 252827_at AT4G39950 CYP79B2, cytochrome P450, family 79, subfamily B, polypeptide 2 -0.135 -1.117
178 246125_at AT5G19875 unknown -0.134 -0.854
179 253922_at AT4G26850 VTC2, vitamin c defective 2 -0.134 -4.138