4.0:Information of module
hni9 low nitrogen
In comparison with 3x(p) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009812 flavonoid metabolic process BP 9.748e-08
GO:0009813 flavonoid biosynthetic process BP 9.827e-08
GO:0010224 response to UV-B BP 2.258e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 1.049e-18
GO:1901700 response to oxygen-containing compound BP 8.635e-17
GO:1901698 response to nitrogen compound BP 4.667e-16
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
hni9 low nitrogen		 Log2 signal ratio
3x(p)
1 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 0.520 0.038
2 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.490 -0.014
3 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.456 0.058
4 267414_at AT2G34790 EDA28, EMBRYO SAC DEVELOPMENT ARREST 28, MEE23, MATERNAL EFFECT EMBRYO ARREST 23 0.445 -0.161
5 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 0.408 -0.048
6 249756_at AT5G24313 unknown 0.407 0.074
7 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.392 0.149
8 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] 0.386 0.157
9 247204_at AT5G64990 AtRABH1a, RAB GTPase homolog H1A, RABH1a, RAB GTPase homolog H1A 0.385 -0.014
10 248545_at AT5G50260 CEP1, cysteine endopeptidase 1 0.354 0.026
11 264346_at AT1G12010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.345 -0.063
12 265809_at AT2G18100 unknown 0.329 0.001
13 254391_at AT4G21590 ENDO3, endonuclease 3 0.276 -0.087
14 250620_at AT5G07190 ATS3, seed gene 3 0.273 -0.099
15 250576_at AT5G08250 [Cytochrome P450 superfamily protein] 0.272 0.001
16 253774_at AT4G28530 anac074, NAC domain containing protein 74, NAC074, NAC domain containing protein 74 0.270 -0.054
17 261844_at AT1G15940 [Tudor/PWWP/MBT superfamily protein] 0.269 0.032
18 263974_at AT2G42720 [FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein] 0.268 -0.079
19 262454_at AT1G11190 BFN1, bifunctional nuclease i, ENDO1, ENDONUCLEASE 1 0.262 -0.028
20 252447_at AT3G47040 [Glycosyl hydrolase family protein] 0.259 0.015
21 251070_at AT5G01940 [eukaryotic translation initiation factor 2B family protein / eIF-2B family protein] 0.253 -0.024
22 254534_at AT4G19680 ATIRT2, IRON REGULATED TRANSPORTER 2, IRT2, iron regulated transporter 2 0.246 -0.041
23 250262_at AT5G13410 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] 0.244 0.024
24 246839_at AT5G26720 unknown 0.242 0.055
25 257262_at AT3G21890 BBX31, B-box domain protein 31 0.241 -0.175
26 256796_at AT3G22210 unknown 0.240 -0.020
27 258707_at AT3G09480 [Histone superfamily protein] 0.239 0.015
28 247837_at AT5G57840 [HXXXD-type acyl-transferase family protein] 0.231 -0.044
29 256832_at AT3G22880 ARLIM15, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, ATDMC1, ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, DMC1, DISRUPTION OF MEIOTIC CONTROL 1 0.227 0.022
30 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.226 -0.020
31 245767_at AT1G33612 [Leucine-rich repeat (LRR) family protein] 0.226 -0.032
32 259964_at AT1G53680 ATGSTU28, glutathione S-transferase TAU 28, GSTU28, glutathione S-transferase TAU 28 0.217 0.039
33 264517_at AT1G10120 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.214 0.009
34 266640_at AT2G35585 unknown 0.205 0.005
35 256450_at AT1G75290 [NAD(P)-binding Rossmann-fold superfamily protein] 0.202 0.014
36 264284_at AT1G61860 [Protein kinase superfamily protein] 0.201 -0.009
37 266009_at AT2G37420 [ATP binding microtubule motor family protein] 0.199 0.017
38 265290_at AT2G22590 [UDP-Glycosyltransferase superfamily protein] 0.197 -0.030
39 266098_at AT2G37870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.195 0.123
40 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] 0.190 -0.093
41 260213_at AT1G74490 [Protein kinase superfamily protein] 0.190 -0.058
42 260066_at AT1G73610 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.188 -0.002
43 260053_at AT1G78120 TPR12, tetratricopeptide repeat 12 0.184 -0.116
44 264989_at AT1G27200 unknown 0.183 0.031
45 247959_at AT5G57080 unknown 0.182 -0.043
46 261199_at AT1G12950 RSH2, root hair specific 2 0.182 0.066
47 245930_at AT5G09240 [ssDNA-binding transcriptional regulator] 0.181 0.010
48 255887_at AT1G20370 [Pseudouridine synthase family protein] 0.180 -0.054
49 249011_at AT5G44670 GALS2, galactan synthase 2 0.177 -0.085
50 246534_at AT5G15890 TBL21, TRICHOME BIREFRINGENCE-LIKE 21 0.177 -0.026
51 260558_at AT2G43600 [Chitinase family protein] 0.174 -0.065
52 248294_at AT5G53060 RCF3, regulator of CBF gene expression 3, SHI1, SHINY 1 0.170 0.002
53 251827_at AT3G55120 A11, AtCHI, CFI, CHALCONE FLAVANONE ISOMERASE, CHI, chalcone isomerase, TT5, TRANSPARENT TESTA 5 0.169 -0.049
54 250690_at AT5G06530 ABCG22, ATP-binding cassette G22, AtABCG22, Arabidopsis thaliana ATP-binding cassette G22 0.165 0.035
55 245056_at AT2G26480 UGT76D1, UDP-glucosyl transferase 76D1 0.164 -0.007
56 267119_at AT2G32610 ATCSLB01, cellulose synthase-like B1, ATCSLB1, CELLULOSE SYNTHASE LIKE B1, CSLB01, CELLULOSE SYNTHASE LIKE B1, CSLB01, cellulose synthase-like B1 0.164 -0.132
57 249709_at AT5G35670 iqd33, IQ-domain 33 0.163 0.031
58 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like 0.163 -0.031
59 252236_at AT3G49930 [C2H2 and C2HC zinc fingers superfamily protein] 0.161 0.047
60 245262_at AT4G16563 [Eukaryotic aspartyl protease family protein] 0.160 -0.252
61 263883_at AT2G21830 [Cysteine/Histidine-rich C1 domain family protein] 0.160 -0.038
62 253045_at AT4G37445 unknown 0.158 -0.027
63 253638_at AT4G30470 [NAD(P)-binding Rossmann-fold superfamily protein] 0.157 0.047
64 249724_at AT5G35450 [Disease resistance protein (CC-NBS-LRR class) family] 0.157 -0.070
65 250802_at AT5G04970 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.153 -0.050
66 256377_at AT1G66650 [Protein with RING/U-box and TRAF-like domains] 0.152 0.016
67 247393_at AT5G63130 [Octicosapeptide/Phox/Bem1p family protein] 0.151 0.190
68 267410_at AT2G34920 EDA18, embryo sac development arrest 18 0.151 -0.061
69 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.151 0.006
70 252478_at AT3G46540 [ENTH/VHS family protein] 0.150 0.050
71 246786_at AT5G27410 [D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein] 0.149 0.017
72 257715_at AT3G12750 AtZIP1, ZIP1, zinc transporter 1 precursor 0.149 0.029
73 265683_at AT2G24400 SAUR38, SMALL AUXIN UPREGULATED RNA 38 0.147 -0.025
74 247705_at AT5G59460 [scarecrow-like transcription factor 11 (SCL11)] 0.146 0.008
75 249059_at AT5G44530 [Subtilase family protein] 0.145 -0.121
76 258529_at AT3G06740 GATA15, GATA transcription factor 15 0.145 -0.075
77 264730_at AT1G62085 [Mitochondrial transcription termination factor family protein] 0.144 -0.036
78 246566_at AT5G14940 [Major facilitator superfamily protein] 0.143 -0.008
79 246238_at AT4G36670 AtPLT6, AtPMT6, PLT6, polyol transporter 6, PMT6, polyol/monosaccharide transporter 6 0.142 -0.000
80 248230_at AT5G53830 [VQ motif-containing protein] 0.141 0.197
81 250467_at AT5G10100 TPPI, trehalose-6-phosphate phosphatase I 0.141 0.104
82 248961_at AT5G45650 [subtilase family protein] 0.141 -0.056
83 249136_at AT5G43180 unknown 0.140 -0.115
84 246079_at AT5G20450 unknown 0.140 0.003
85 245396_at AT4G14870 SECE1 0.140 0.030
86 253934_at AT4G26830 [O-Glycosyl hydrolases family 17 protein] 0.139 0.030
87 267578_at AT2G30695 unknown 0.138 0.047
88 261916_at AT1G65910 anac028, NAC domain containing protein 28, NAC028, NAC domain containing protein 28 0.138 -0.015
89 250391_at AT5G10850 [similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1)] 0.138 -0.053
90 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.757 0.539
91 250798_at AT5G05340 PRX52, peroxidase 52 -0.642 0.070
92 257670_at AT3G20340 unknown -0.614 0.015
93 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.597 0.295
94 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 -0.594 0.010
95 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -0.592 0.473
96 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 -0.559 0.009
97 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 -0.548 0.200
98 264682_at AT1G65570 [Pectin lyase-like superfamily protein] -0.548 0.083
99 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.546 0.017
100 263402_at AT2G04050 [MATE efflux family protein] -0.502 -0.041
101 247882_at AT5G57785 unknown -0.488 -0.015
102 249459_at AT5G39580 [Peroxidase superfamily protein] -0.482 -0.057
103 262304_at AT1G70890 MLP43, MLP-like protein 43 -0.460 0.111
104 255160_at AT4G07820 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.449 -0.002
105 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 -0.449 0.001
106 247685_at AT5G59680 [Leucine-rich repeat protein kinase family protein] -0.449 0.120
107 261567_at AT1G33055 unknown -0.447 0.220
108 250515_at AT5G09570 [Cox19-like CHCH family protein] -0.442 0.003
109 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 -0.441 0.015
110 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor -0.438 0.123
111 245267_at AT4G14060 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.420 0.009
112 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 -0.388 -0.060
113 267459_at AT2G33850 unknown -0.386 -0.096
114 252391_at AT3G47860 CHL, chloroplastic lipocalin -0.373 0.009
115 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 -0.370 -0.057
116 262047_at AT1G80160 GLYI7, glyoxylase I 7 -0.360 0.144
117 265025_at AT1G24575 unknown -0.352 -0.005
118 248079_at AT5G55790 unknown -0.336 0.042
119 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 -0.333 0.035
120 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR -0.327 0.375
121 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 -0.326 0.400
122 245567_at AT4G14630 GLP9, germin-like protein 9 -0.322 0.088
123 262603_at AT1G15380 GLYI4, glyoxylase I 4 -0.321 -0.029
124 258225_at AT3G15630 unknown -0.317 0.216
125 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 -0.317 0.120
126 259235_at AT3G11600 unknown -0.316 0.017
127 259548_at AT1G35260 MLP165, MLP-like protein 165 -0.309 -0.015
128 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 -0.309 0.425
129 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.308 0.235
130 245967_at AT5G19800 [hydroxyproline-rich glycoprotein family protein] -0.307 0.207
131 247754_at AT5G59080 unknown -0.306 0.158
132 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] -0.304 0.027
133 247072_at AT5G66490 unknown -0.302 0.057
134 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.301 -0.074
135 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.299 0.002
136 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] -0.294 0.183
137 262406_at AT1G34670 AtMYB93, myb domain protein 93, MYB93, myb domain protein 93 -0.292 -0.098
138 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 -0.292 -0.022
139 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] -0.288 0.537
140 255807_at AT4G10270 [Wound-responsive family protein] -0.288 0.011
141 263515_at AT2G21640 unknown -0.285 -0.056
142 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 -0.280 -0.038
143 251293_at AT3G61930 unknown -0.273 -0.224
144 245736_at AT1G73330 ATDR4, drought-repressed 4, DR4, drought-repressed 4 -0.273 -0.029
145 267178_at AT2G37750 unknown -0.273 0.112
146 252882_at AT4G39675 unknown -0.273 0.103
147 251405_at AT3G60330 AHA7, H(+)-ATPase 7, HA7, H(+)-ATPase 7 -0.271 0.009
148 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.268 -0.106
149 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 -0.267 0.207
150 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 -0.264 -0.037
151 246374_at AT1G51840 [protein kinase-related] -0.262 -0.033
152 251195_at AT3G62930 [Thioredoxin superfamily protein] -0.262 0.035
153 246228_at AT4G36430 [Peroxidase superfamily protein] -0.262 -0.225
154 249557_at AT5G38280 PR5K, PR5-like receptor kinase -0.261 -0.007
155 246195_at AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 -0.260 0.087
156 260522_x_at AT2G41730 unknown -0.258 0.021
157 249932_at AT5G22390 unknown -0.257 0.154
158 260353_at AT1G69230 SP1L2, SPIRAL1-like2 -0.257 0.004
159 246114_at AT5G20250 DIN10, DARK INDUCIBLE 10, RS6, raffinose synthase 6 -0.256 0.168
160 266222_at AT2G28780 unknown -0.255 -0.153
161 261429_at AT1G18860 ATWRKY61, WRKY DNA-BINDING PROTEIN 61, WRKY61, WRKY DNA-binding protein 61 -0.254 -0.001
162 264580_at AT1G05340 unknown -0.253 0.133
163 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 -0.251 -0.053
164 256927_at AT3G22550 unknown -0.249 0.029
165 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 -0.248 0.102
166 252864_at AT4G39740 HCC2, homologue of copper chaperone SCO1 2 -0.246 -0.082
167 250952_at AT5G03570 ATIREG2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, FPN2, FERROPORTIN 2, IREG2, iron regulated 2 -0.242 -0.143
168 247047_at AT5G66650 unknown -0.241 0.064
169 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 -0.240 -0.081
170 245305_at AT4G17215 [Pollen Ole e 1 allergen and extensin family protein] -0.239 0.035
171 267128_at AT2G23620 ATMES1, ARABIDOPSIS THALIANA METHYL ESTERASE 1, MES1, methyl esterase 1 -0.236 0.069
172 261224_at AT1G20160 ATSBT5.2 -0.234 0.029
173 252638_at AT3G44540 FAR4, fatty acid reductase 4 -0.233 -0.026
174 246216_at AT4G36380 ROT3, ROTUNDIFOLIA 3 -0.233 -0.037
175 247293_at AT5G64510 TIN1, tunicamycin induced 1 -0.232 0.051
176 263227_at AT1G30750 unknown -0.231 0.024
177 261821_at AT1G11530 ATCXXS1, C-terminal cysteine residue is changed to a serine 1, CXXS1, C-terminal cysteine residue is changed to a serine 1 -0.231 0.055