4.0:Information of module
Stem+10 mg/g NPA
In comparison with rdr6-15 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0071554 cell wall organization or biogenesis BP 3.054e-23
GO:0035266 meristem growth BP 2.795e-21
GO:0010073 meristem maintenance BP 3.638e-21
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006626 protein targeting to mitochondrion BP 1.610e-07
GO:0070585 protein localization to mitochondrion BP 1.610e-07
GO:0072655 establishment of protein localization to... BP 1.610e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Stem+10 mg/g NPA		 Log2 signal ratio
rdr6-15
1 245076_at AT2G23170 GH3.3 1.073 -0.408
2 263825_at AT2G40370 LAC5, laccase 5 0.583 -0.422
3 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] 0.573 -0.011
4 251131_at AT5G01190 LAC10, laccase 10 0.568 0.018
5 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 0.553 -0.214
6 253617_at AT4G30410 [sequence-specific DNA binding transcription factors] 0.519 -0.134
7 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.515 0.546
8 251668_at AT3G57010 [Calcium-dependent phosphotriesterase superfamily protein] 0.512 -0.130
9 253908_at AT4G27260 GH3.5, WES1 0.508 -0.332
10 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 0.501 -0.217
11 254753_at AT4G13190 [Protein kinase superfamily protein] 0.471 0.144
12 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 0.441 0.095
13 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.440 -0.053
14 254632_at AT4G18630 unknown 0.410 0.162
15 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 0.405 0.076
16 255517_at AT4G02290 AtGH9B13, glycosyl hydrolase 9B13, GH9B13, glycosyl hydrolase 9B13 0.400 -0.211
17 266507_at AT2G47860 SETH6 0.398 0.100
18 253821_at AT4G28380 [Leucine-rich repeat (LRR) family protein] 0.397 0.107
19 258367_at AT3G14370 WAG2 0.395 -0.158
20 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 0.385 0.001
21 250661_at AT5G07030 [Eukaryotic aspartyl protease family protein] 0.381 -0.057
22 263664_at AT1G04250 AXR3, AUXIN RESISTANT 3, IAA17, indole-3-acetic acid inducible 17 0.375 -0.186
23 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 0.374 0.270
24 263485_at AT2G29890 ATVLN1, VLN1, villin 1 0.359 -0.172
25 257815_at AT3G25130 unknown 0.356 -0.127
26 254490_at AT4G20320 [CTP synthase family protein] 0.354 -0.436
27 260024_at AT1G30080 [Glycosyl hydrolase superfamily protein] 0.346 -0.266
28 266503_at AT2G47780 [Rubber elongation factor protein (REF)] 0.346 -0.022
29 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.343 0.205
30 258859_at AT3G02120 [hydroxyproline-rich glycoprotein family protein] 0.342 -0.016
31 257748_at AT3G18710 ATPUB29, ARABIDOPSIS THALIANA PLANT U-BOX 29, PUB29, plant U-box 29 0.339 0.067
32 253815_at AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 0.338 -0.139
33 254240_at AT4G23496 SP1L5, SPIRAL1-like5 0.334 0.258
34 257735_at AT3G27400 [Pectin lyase-like superfamily protein] 0.333 -0.319
35 247797_at AT5G58780 AtcPT5, AtHEPS, cPT5, cis -prenyltransferase 5, HEPS, heptaprenyl diphosphate synthase 0.330 -0.013
36 267388_at AT2G44450 BGLU15, beta glucosidase 15 0.329 -0.090
37 263496_at AT2G42570 TBL39, TRICHOME BIREFRINGENCE-LIKE 39 0.329 -0.184
38 260181_at AT1G70710 ATGH9B1, glycosyl hydrolase 9B1, CEL1, CELLULASE 1, GH9B1, glycosyl hydrolase 9B1 0.326 -0.313
39 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 0.325 0.196
40 256081_at AT1G20700 ATWOX14, WUSCHEL RELATED HOMEOBOX 14, WOX14, WUSCHEL related homeobox 14 0.322 -0.080
41 254332_at AT4G22730 [Leucine-rich repeat protein kinase family protein] 0.319 -0.295
42 257978_at AT3G20860 ATNEK5, NIMA-related kinase 5, NEK5, NIMA-related kinase 5 0.315 0.280
43 261521_at AT1G71830 ATSERK1, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1, SERK1, somatic embryogenesis receptor-like kinase 1 0.314 -0.309
44 256125_at AT1G18250 ATLP-1 0.310 0.168
45 250770_at AT5G05390 LAC12, laccase 12 0.310 0.086
46 246085_at AT5G20540 ATBRXL4, BREVIS RADIX-like 4, BRX-LIKE4, BRXL4, BREVIS RADIX-like 4 0.309 0.006
47 263179_at AT1G05710 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.307 -0.085
48 259010_at AT3G07340 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.307 0.068
49 262715_at AT1G16490 ATMYB58, MYB DOMAIN PROTEIN 58, MYB58, myb domain protein 58 0.303 -0.120
50 245479_at AT4G16140 [proline-rich family protein] 0.302 -0.033
51 265656_at AT2G13820 AtXYP2, XYP2, xylogen protein 2 0.301 -0.027
52 249227_at AT5G42180 PER64, peroxidase 64 0.298 -0.135
53 247097_at AT5G66460 AtMAN7, MAN7, endo-beta-mannase 7 0.296 -0.163
54 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.289 -0.022
55 258054_at AT3G16240 AQP1, ATTIP2;1, DELTA-TIP, delta tonoplast integral protein, DELTA-TIP1, TIP2;1 0.288 -0.000
56 257947_at AT3G21720 ICL, isocitrate lyase 0.288 0.420
57 258618_at AT3G02885 GASA5, GAST1 protein homolog 5 0.287 -0.153
58 255876_at AT2G40480 unknown 0.287 -0.058
59 254233_at AT4G23800 3xHMG-box2, 3xHigh Mobility Group-box2 0.287 0.182
60 255860_at AT5G34940 AtGUS3, glucuronidase 3, GUS3, glucuronidase 3 0.286 -0.192
61 254466_at AT4G20430 [Subtilase family protein] 0.286 0.177
62 266637_at AT2G35600 ATBRXL1, ARABIDOPSIS THALIANA BREVIS RADIX LIKE 1, BRXL1, BREVIS RADIX-like 1 0.283 0.057
63 261363_at AT1G41830 SKS6, SKU5 SIMILAR 6, SKS6, SKU5-similar 6 0.282 0.047
64 256743_at AT3G29370 P1R3, P1R3 0.278 -0.185
65 261460_at AT1G07880 ATMPK13 0.278 0.126
66 250216_at AT5G14090 AtLAZY1, LAZY1, LAZY 1 0.275 -0.021
67 267343_at AT2G44260 unknown 0.273 -0.217
68 264184_at AT1G54790 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.272 0.070
69 267284_at AT2G23700 unknown 0.271 0.038
70 245196_at AT1G67750 [Pectate lyase family protein] 0.271 -0.091
71 258341_at AT3G22790 NET1A, Networked 1A 0.270 0.076
72 261399_at AT1G79620 [Leucine-rich repeat protein kinase family protein] 0.270 0.267
73 251303_at AT3G61910 ANAC066, NAC domain protein 66, NAC066, NAC domain protein 66, NST2, NAC SECONDARY WALL THICKENING PROMOTING FACTOR2 0.269 0.086
74 263913_at AT2G36570 PXC1, PXY/TDR-correlated 1 0.268 -0.141
75 259200_at AT3G09070 OPS, OCTOPUS 0.268 0.099
76 267182_at AT2G23360 unknown 0.268 -0.123
77 251113_at AT5G01370 ACI1, ALC-interacting protein 1, TRM29, TON1 Recruiting Motif 29 0.267 -0.094
78 258796_at AT3G04630 WDL1, WVD2-like 1 0.267 -0.136
79 267465_at AT2G19170 SLP3, subtilisin-like serine protease 3 0.266 -0.046
80 262871_at AT1G65010 [INVOLVED IN: flower development] 0.266 0.168
81 257952_at AT3G21770 [Peroxidase superfamily protein] 0.265 -0.168
82 264611_at AT1G04680 [Pectin lyase-like superfamily protein] 0.265 -0.045
83 266215_at AT2G06850 EXGT-A1, endoxyloglucan transferase A1, EXT, ENDOXYLOGLUCAN TRANSFERASE, XTH4, xyloglucan endotransglucosylase/hydrolase 4 0.265 -0.115
84 247085_at AT5G66310 [ATP binding microtubule motor family protein] 0.265 -0.000
85 258471_at AT3G06030 ANP3, NPK1-related protein kinase 3, AtANP3, MAPKKK12, NP3, NPK1-related protein kinase 3 0.263 0.095
86 257233_at AT3G15050 IQD10, IQ-domain 10 0.262 0.103
87 251688_at AT3G56480 [myosin heavy chain-related] 0.261 -0.030
88 266812_at AT2G44830 [Protein kinase superfamily protein] 0.260 -0.037
89 256054_at AT1G07120 unknown 0.256 -0.028
90 256721_at AT2G34150 ATRANGAP2, ATSCAR1, SCAR1, WAVE1, WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1 0.256 -0.043
91 245506_at AT4G15700 [Thioredoxin superfamily protein] -0.482 0.306
92 256598_at AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -0.423 -0.202
93 247333_at AT5G63600 ATFLS5, FLS5, flavonol synthase 5 -0.394 0.111
94 245505_at AT4G15690 [Thioredoxin superfamily protein] -0.386 0.182
95 264151_at AT1G02070 unknown -0.346 -0.371
96 267337_at AT2G39980 [HXXXD-type acyl-transferase family protein] -0.332 -0.102
97 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.308 -0.377
98 248050_at AT5G56100 [glycine-rich protein / oleosin] -0.294 0.063
99 250680_at AT5G06570 [alpha/beta-Hydrolases superfamily protein] -0.293 0.128
100 245304_at AT4G15630 [Uncharacterised protein family (UPF0497)] -0.289 -0.041
101 264638_at AT1G65480 FT, FLOWERING LOCUS T, RSB8, REDUCED STEM BRANCHING 8 -0.284 -0.470
102 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.260 -0.376
103 265511_at AT2G05540 [Glycine-rich protein family] -0.260 -0.307
104 259711_at AT1G77570 AtREN1, REN1, restricted to nucleolus 1 -0.243 0.087
105 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA -0.242 0.605
106 253522_at AT4G31290 AtGGCT2;2, GGCT2;2, gamma-glutamyl cyclotransferase 2;2 -0.238 -0.155
107 262446_at AT1G49310 unknown -0.236 -0.197
108 255942_at AT1G22360 AtUGT85A2, UDP-glucosyl transferase 85A2, UGT85A2, UDP-glucosyl transferase 85A2 -0.227 0.207
109 252327_at AT3G48740 AtSWEET11, SWEET11 -0.223 0.016
110 260799_at AT1G78270 AtUGT85A4, UDP-glucosyl transferase 85A4, UGT85A4, UDP-glucosyl transferase 85A4 -0.218 0.169
111 249726_at AT5G35480 unknown -0.215 0.019
112 258727_at AT3G11930 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.207 0.015
113 245141_at AT2G45400 BEN1, BRI1-5 ENHANCED 1 -0.206 0.023
114 247291_at AT5G64480 unknown -0.198 0.128
115 266808_at AT2G29995 unknown -0.196 -0.055
116 247529_at AT5G61520 [Major facilitator superfamily protein] -0.192 0.077
117 254795_at AT4G12990 unknown -0.185 0.096
118 252712_at AT3G43800 ATGSTU27, glutathione S-transferase tau 27, GSTU27, glutathione S-transferase tau 27 -0.181 0.351
119 250455_at AT5G09980 PROPEP4, elicitor peptide 4 precursor -0.179 -0.329
120 252195_at AT3G50190 unknown -0.176 -0.055
121 263474_at AT2G31725 unknown -0.173 0.035
122 245544_at AT4G15270 [glucosyltransferase-related] -0.173 -0.080
123 254939_at AT4G10800 unknown -0.171 0.026
124 245399_at AT4G17340 DELTA-TIP2, TIP2;2, tonoplast intrinsic protein 2;2 -0.169 0.175
125 250152_at AT5G15120 unknown -0.168 -0.010
126 264238_at AT1G54740 unknown -0.166 0.124
127 259320_at AT3G01080 ATWRKY58, WRKY DNA-BINDING PROTEIN 58, WRKY58, WRKY DNA-binding protein 58 -0.164 -0.026
128 263632_at AT2G04795 unknown -0.164 0.088
129 262043_at AT1G80190 PSF1, partner of SLD five 1 -0.162 0.007
130 258421_at AT3G16690 AtSWEET16, SWEET16 -0.159 -0.094
131 250974_at AT5G02820 BIN5, BRASSINOSTEROID INSENSITIVE 5, RHL2, ROOT HAIRLESS 2 -0.158 0.029
132 246782_at AT5G27320 ATGID1C, GID1C, GA INSENSITIVE DWARF1C -0.158 -0.199
133 259134_at AT3G05390 unknown -0.157 -0.200
134 253075_at AT4G36150 [Disease resistance protein (TIR-NBS-LRR class) family] -0.156 0.015
135 247492_at AT5G61890 [Integrase-type DNA-binding superfamily protein] -0.154 0.057
136 250758_at AT5G06000 ATEIF3G2, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITIATION FACTOR 3G2, EIF3G2, eukaryotic translation initiation factor 3G2 -0.153 -0.029
137 249529_at AT5G38730 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.152 -0.025
138 250018_at AT5G18150 [Methyltransferase-related protein] -0.151 -0.018
139 256030_at AT1G34110 [Leucine-rich receptor-like protein kinase family protein] -0.151 -0.130
140 255854_at AT1G67050 unknown -0.149 -0.035
141 245117_at AT2G41560 ACA4, autoinhibited Ca(2+)-ATPase, isoform 4 -0.149 0.285
142 259889_at AT1G76405 unknown -0.148 0.111
143 250722_at AT5G06190 unknown -0.146 -0.142
144 254248_at AT4G23270 CRK19, cysteine-rich RLK (RECEPTOR-like protein kinase) 19 -0.146 0.474
145 257206_at AT3G16530 [Legume lectin family protein] -0.145 0.663
146 261048_at AT1G01420 UGT72B3, UDP-glucosyl transferase 72B3 -0.145 -0.198
147 251476_at AT3G59670 unknown -0.142 -0.016
148 248276_at AT5G53550 ATYSL3, YELLOW STRIPE LIKE 3, YSL3, YELLOW STRIPE like 3 -0.142 0.001
149 249375_at AT5G40730 AGP24, arabinogalactan protein 24, ATAGP24, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 24 -0.142 -0.359
150 253992_at AT4G26060 [Ribosomal protein L18ae family] -0.141 0.072
151 266278_at AT2G29300 [NAD(P)-binding Rossmann-fold superfamily protein] -0.140 0.167
152 247736_at AT5G59370 ACT4, actin 4 -0.139 -0.401
153 250948_at AT5G03490 [UDP-Glycosyltransferase superfamily protein] -0.138 0.015
154 249731_at AT5G24440 CID13, CTC-interacting domain 13 -0.137 0.226
155 249485_at AT5G39020 [Malectin/receptor-like protein kinase family protein] -0.137 0.316
156 262743_at AT1G29020 [Calcium-binding EF-hand family protein] -0.136 -0.018
157 246406_at AT1G57650 [ATP binding] -0.136 0.222
158 255832_at AT2G33360 unknown -0.136 -0.092
159 252281_at AT3G49320 [Metal-dependent protein hydrolase] -0.135 0.136
160 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 -0.134 0.112
161 257678_at AT3G20420 ATRTL2, RNASEIII-LIKE 2, RTL2, RNAse THREE-like protein 2 -0.134 0.273
162 261221_at AT1G19960 unknown -0.133 0.434
163 261676_at AT1G18480 AtSLP2, SLP2, Shewenella-like protein phosphatase 2 -0.133 -0.061
164 263126_at AT1G78460 [SOUL heme-binding family protein] -0.132 -0.294
165 267481_at AT2G02780 Leucine-rich repeat protein kinase family protein -0.131 -0.330
166 262864_at AT1G64920 [UDP-Glycosyltransferase superfamily protein] -0.131 -0.050
167 253492_at AT4G31810 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] -0.131 0.199
168 264047_at AT2G22410 SLO1, SLOW GROWTH 1 -0.131 -0.077
169 258251_at AT3G15810 unknown -0.129 -0.019
170 247844_at AT5G58080 ARR18, response regulator 18, RR18, response regulator 18 -0.128 0.150
171 264264_at AT1G09250 AIF4, ATBS1 Interacting Factor 4 -0.127 -0.105
172 257821_at AT3G25170 RALFL26, ralf-like 26 -0.127 -0.657
173 251986_at AT3G53310 [AP2/B3-like transcriptional factor family protein] -0.126 -0.193
174 252283_at AT3G48960 [Ribosomal protein L13e family protein] -0.126 -0.072
175 257461_at AT1G75470 ATPUP15, purine permease 15, PUP15, purine permease 15 -0.125 -0.067
176 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 -0.125 -0.138
177 263579_at AT2G17030 unknown -0.124 -0.108
178 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] -0.123 0.178
179 252452_at AT3G47110 [Leucine-rich repeat protein kinase family protein] -0.123 -0.256