4.0:Information of module
Stem wox4
In comparison with Red Light 45min  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009914 hormone transport BP 9.018e-05
GO:0060918 auxin transport BP 9.018e-05
GO:1901657 glycosyl compound metabolic process BP 1.002e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0000910 cytokinesis BP 8.180e-13
GO:0000911 cytokinesis by cell plate formation BP 1.416e-12
GO:0032506 cytokinetic process BP 2.061e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Stem wox4		 Log2 signal ratio
Red Light 45min
1 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 0.355 0.013
2 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 0.279 -0.022
3 247377_at AT5G63180 [Pectin lyase-like superfamily protein] 0.217 0.011
4 252501_at AT3G46880 unknown 0.211 -0.041
5 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.201 0.172
6 246900_at AT5G25620 AtYUC6, YUC6, YUCCA6 0.196 0.011
7 250661_at AT5G07030 [Eukaryotic aspartyl protease family protein] 0.191 -0.019
8 247850_at AT5G58150 [Leucine-rich repeat protein kinase family protein] 0.178 -0.005
9 262902_x_at AT1G59930 [MADS-box family protein] 0.177 -0.003
10 250471_at AT5G10170 ATMIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, MIPS3, myo-inositol-1-phosphate synthase 3 0.166 0.041
11 253966_at AT4G26520 AtFBA7, FBA7, fructose-bisphosphate aldolase 7 0.165 -0.031
12 246107_at AT5G28700 [pseudogene] 0.152 -0.076
13 249726_at AT5G35480 unknown 0.150 -0.031
14 250574_at AT5G08230 [Tudor/PWWP/MBT domain-containing protein] 0.149 -0.018
15 248230_at AT5G53830 [VQ motif-containing protein] 0.149 0.076
16 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 0.147 0.232
17 247116_at AT5G65970 ATMLO10, MILDEW RESISTANCE LOCUS O 10, MLO10, MILDEW RESISTANCE LOCUS O 10 0.144 0.048
18 248976_at AT5G44930 ARAD2, ARABINAN DEFICIENT 2 0.143 0.011
19 254069_at AT4G25434 ATNUDT10, nudix hydrolase homolog 10, NUDT10, nudix hydrolase homolog 10 0.130 -0.046
20 247796_at AT5G58782 AtcPT6, cPT6, cis-prenyltransferase 6 0.126 -0.022
21 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 0.124 0.193
22 263883_at AT2G21830 [Cysteine/Histidine-rich C1 domain family protein] 0.123 0.002
23 260831_at AT1G06830 [Glutaredoxin family protein] 0.122 -0.001
24 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B 0.121 -0.016
25 259478_at AT1G18980 [RmlC-like cupins superfamily protein] 0.120 -0.042
26 263549_at AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 0.119 -0.030
27 251246_at AT3G62100 IAA30, indole-3-acetic acid inducible 30 0.119 -0.033
28 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.117 -0.019
29 262630_at AT1G06520 ATGPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, sn-2-GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1 0.117 -0.002
30 260801_at AT1G78430 RIP4, ROP interactive partner 4 0.116 0.013
31 249570_at AT5G38080 unknown 0.114 -0.086
32 264788_at AT2G17880 DJC24, DNA J protein C24 0.113 0.071
33 252834_at AT4G40070 [RING/U-box superfamily protein] 0.112 -0.014
34 263788_at AT2G24580 [FAD-dependent oxidoreductase family protein] 0.112 0.006
35 255157_at AT4G07790 [hypothetical protein] 0.111 0.003
36 245637_at AT1G25230 [Calcineurin-like metallo-phosphoesterase superfamily protein] 0.110 -0.006
37 264962_at AT1G77110 PIN6, PIN-FORMED 6 0.104 -0.027
38 256976_at AT3G21020 [copia-like retrotransposon family, has a 5.4e-14 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] 0.103 0.039
39 254303_at AT4G22830 unknown 0.103 -0.007
40 253372_at AT4G33220 ATPME44, A. THALIANA PECTIN METHYLESTERASE 44, PME44, pectin methylesterase 44 0.103 -0.003
41 261816_at AT1G08135 ATCHX6B, CHX6B, cation/H+ exchanger 6B 0.102 -0.059
42 262827_at AT1G13100 CYP71B29, cytochrome P450, family 71, subfamily B, polypeptide 29 0.102 0.018
43 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.633 -0.036
44 267425_at AT2G34810 [FAD-binding Berberine family protein] -0.335 0.019
45 266663_at AT2G25790 SKM1, STERILITY-REGULATING KINASE MEMBER 1 -0.328 -0.019
46 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 -0.243 0.006
47 259385_at AT1G13470 unknown -0.233 0.004
48 254562_at AT4G19230 CYP707A1, cytochrome P450, family 707, subfamily A, polypeptide 1 -0.233 -0.032
49 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 -0.230 -0.039
50 248963_at AT5G45700 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.228 0.018
51 256389_at AT3G06220 [AP2/B3-like transcriptional factor family protein] -0.212 0.012
52 247425_at AT5G62550 unknown -0.205 0.088
53 266669_at AT2G29750 UGT71C1, UDP-glucosyl transferase 71C1 -0.197 -0.062
54 266555_at AT2G46270 GBF3, G-box binding factor 3 -0.188 0.005
55 267555_at AT2G32765 ATSUMO5, SUM5, SUMO 5, SUMO5, small ubiquitinrelated modifier 5 -0.188 0.022
56 266503_at AT2G47780 [Rubber elongation factor protein (REF)] -0.187 -0.000
57 266989_at AT2G39330 JAL23, jacalin-related lectin 23 -0.182 -0.054
58 254361_at AT4G22212 [Arabidopsis defensin-like protein] -0.181 -0.017
59 247696_at AT5G59780 ATMYB59, MYB DOMAIN PROTEIN 59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59, myb domain protein 59 -0.181 0.049
60 259753_at AT1G71050 HIPP20, heavy metal associated isoprenylated plant protein 20 -0.159 -0.013
61 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 -0.158 -0.043
62 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 -0.151 0.015
63 266655_at AT2G25880 AtAUR2, ataurora2, AUR2, ataurora2 -0.150 0.008
64 245662_at AT1G28190 unknown -0.146 0.076
65 253684_at AT4G29690 [Alkaline-phosphatase-like family protein] -0.143 -0.040
66 258947_at AT3G01830 [Calcium-binding EF-hand family protein] -0.139 0.014
67 265414_at AT2G16660 [Major facilitator superfamily protein] -0.139 -0.015
68 252387_at AT3G47800 [Galactose mutarotase-like superfamily protein] -0.138 -0.062
69 255265_at AT4G05190 ATK5, kinesin 5 -0.137 -0.000
70 256081_at AT1G20700 ATWOX14, WUSCHEL RELATED HOMEOBOX 14, WOX14, WUSCHEL related homeobox 14 -0.137 -0.035
71 247603_at AT5G60930 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.134 0.010
72 248660_at AT5G48650 [Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain] -0.133 0.040
73 259302_at AT3G05120 ATGID1A, GA INSENSITIVE DWARF1A, GID1A, GA INSENSITIVE DWARF1A -0.131 -0.009
74 248413_at AT5G51600 ATMAP65-3, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, MAP65-3, MICROTUBULE-ASSOCIATED PROTEIN 65-3, PLE, PLEIADE -0.131 0.008
75 265452_at AT2G46510 AIB, ABA-inducible BHLH-type transcription factor, ATAIB, ABA-inducible BHLH-type transcription factor, JAM1, JA-associated MYC2-like 1 -0.129 -0.007
76 249379_at AT5G40460 unknown -0.128 -0.028
77 252684_at AT3G44400 [Disease resistance protein (TIR-NBS-LRR class) family] -0.128 0.012
78 246929_at AT5G25210 unknown -0.126 0.049
79 247962_at AT5G56580 ANQ1, ARABIDOPSIS NQK1, ATMKK6, ARABIDOPSIS THALIANA MAP KINASE KINASE 6, MKK6, MAP kinase kinase 6 -0.125 0.018
80 250785_at AT5G05510 [Mad3/BUB1 homology region 1] -0.122 0.013
81 253771_at AT4G28430 [Reticulon family protein] -0.118 0.002
82 257216_at AT3G14990 AtDJ1A, DJ-1 homolog A, DJ-1a, DJ1A, DJ-1 homolog A -0.116 -0.007
83 245343_at AT4G15830 [ARM repeat superfamily protein] -0.116 0.028