4.0:Information of module
ddm1 mutant seedlings
In comparison with whole roots 140 mM NaCl 4 hour help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042546 cell wall biogenesis BP 1.928e-03
GO:0010413 glucuronoxylan metabolic process BP 2.036e-03
GO:0045492 xylan biosynthetic process BP 2.187e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048443 stamen development BP 9.618e-04
GO:0048466 androecium development BP 9.618e-04
GO:0009926 auxin polar transport BP 1.405e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ddm1 mutant seedlings		 Log2 signal ratio
whole roots 140 mM NaCl 4 hour
1 257284_at AT3G29650 [CACTA-like transposase family (Tnp1/En/Spm), has a 5.1e-81 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)] 1.425 0.034
2 259452_at AT1G44060 [CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-22 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.422 -0.003
3 261619_x_at AT1G33130 [CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-125 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.409 -0.031
4 263479_x_at AT2G04000 unknown 1.360 0.003
5 260861_at AT1G43840 [CACTA-like transposase family (Ptta/En/Spm), has a 5.2e-121 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.359 -0.035
6 263675_x_at AT2G04770 [CACTA-like transposase family (Ptta/En/Spm), has a 6.0e-20 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.353 0.031
7 255246_at AT4G05640 unknown 1.323 0.011
8 245203_at AT3G33080 unknown 1.299 0.013
9 248949_at AT5G45570 [Ulp1 protease family protein] 1.289 0.071
10 263819_x_at AT2G10140 [CACTA-like transposase family (Tnp2/En/Spm), has a 1.7e-140 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)] 1.286 0.009
11 265754_x_at AT2G10640 [CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.256 -0.045
12 255172_x_at AT4G08000 [CACTA-like transposase family (Tnp2/En/Spm), has a 1.0e-136 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)] 1.255 -0.021
13 255313_at AT4G04590 [CACTA-like transposase family (Tnp2/En/Spm), has a 5.3e-36 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 1.203 0.025
14 262031_x_at AT1G37160 [gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GI:4567296 from (Arabidopsis thaliana)] 1.167 0.029
15 256748_x_at AT3G30396 [CACTA-like transposase family (Ptta/En/Spm), has a 3.1e-39 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.160 0.043
16 257110_x_at AT3G30440 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1)] 1.150 -0.077
17 266151_x_at AT2G12300 [CACTA-like transposase family (Ptta/En/Spm), has a 3.8e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.134 0.026
18 255322_at AT4G04270 [CACTA-like transposase family (Ptta/En/Spm), has a 9.7e-78 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.110 -0.026
19 265978_at AT2G11140 [copia-like retrotransposon family, has a 1.0e-71 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 1.107 -0.025
20 249114_at AT5G43800 [copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 1.088 -0.033
21 262902_x_at AT1G59930 [MADS-box family protein] 1.080 -0.000
22 246048_at AT5G28880 [pseudogene] 1.062 0.018
23 265524_at AT2G06180 [pseudogene] 1.053 0.084
24 263293_x_at AT2G10880 [hypothetical protein, similar to hypothetical protein GB:AAC26673] 1.048 -0.042
25 257111_x_at AT3G30450 [similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G30450.1)] 1.036 -0.059
26 256538_x_at AT3G32900 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1)] 1.030 -0.070
27 263346_at AT2G05660 [CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 1.010 -0.010
28 255376_x_at AT4G03790 [gypsy-like retrotransposon family (Athila), has a 2.2e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 1.007 -0.023
29 246639_x_at AT5G34895 [similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1)] 1.005 -0.111
30 249259_at AT5G41660 unknown 1.003 -0.016
31 253707_at AT4G29200 [Beta-galactosidase related protein] 1.000 0.036
32 262035_at AT1G37110 [copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] 0.989 0.002
33 261235_x_at AT1G32840 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1)] 0.978 -0.063
34 262034_at AT1G37080 [similar to myb family protein [Arabidopsis thaliana] (TAIR:AT2G22710.1)] 0.971 -0.014
35 265600_at AT2G14230 [CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-119 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.967 0.029
36 256460_at AT1G36240 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.966 -0.031
37 245222_at AT3G29787 [CACTA-like transposase family (Ptta/En/Spm), has a 4.8e-35 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.966 0.008
38 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.964 0.034
39 263511_at AT2G12420 [CACTA-like transposase family (Ptta/En/Spm), has a 3.9e-19 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.958 -0.009
40 257777_x_at AT3G29210 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1)] 0.939 -0.046
41 246640_x_at AT5G34900 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1)] 0.924 -0.039
42 265528_at AT2G06220 unknown 0.917 -0.067
43 255343_at AT4G04530 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1)] 0.917 0.024
44 255335_at AT4G04430 [CACTA-like transposase family (Ptta/En/Spm), has a 8.6e-122 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.905 0.026
45 245032_at AT2G26630 [transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain] 0.880 -0.010
46 250605_at AT5G07570 [glycine/proline-rich protein] 0.874 -0.055
47 256686_at AT3G32110 [non-LTR retrotransposon family (LINE), has a 1.9e-52 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)] 0.833 0.100
48 256840_x_at AT3G32000 [gypsy-like retrotransposon family (Athila), has a 5.4e-305 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 0.831 -0.009
49 263746_at AT2G21460 [copia-like retrotransposon family, has a 1.3e-303 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] 0.797 -0.004
50 246828_at AT5G26350 unknown 0.796 0.059
51 264183_at AT1G65380 AtRLP10, Receptor Like Protein 10, CLV2, clavata 2 -0.789 -0.105
52 258419_at AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] -0.498 0.097
53 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.476 0.022
54 262254_at AT1G53920 GLIP5, GDSL-motif lipase 5 -0.453 -0.048
55 245171_at AT2G47560 [RING/U-box superfamily protein] -0.373 -0.095
56 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.355 -0.176
57 264367_at AT1G03350 [BSD domain-containing protein] -0.336 0.104
58 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.305 0.000
59 257643_at AT3G25730 EDF3, ethylene response DNA binding factor 3 -0.305 -0.008
60 246371_at AT1G51940 LYK3, LysM-containing receptor-like kinase 3 -0.281 -0.128
61 248735_at AT5G48100 ATLAC15, AtTT10, LAC15, LACCASE-LIKE 15, TT10, TRANSPARENT TESTA 10 -0.280 -0.016
62 260100_at AT1G73177 APC13, anaphase-promoting complex 13, BNS, BONSAI -0.252 -0.054
63 248683_at AT5G48490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.248 0.039
64 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] -0.230 0.131
65 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 -0.224 0.006
66 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.223 0.008
67 265051_at AT1G52100 [Mannose-binding lectin superfamily protein] -0.220 0.051
68 257421_at AT1G12030 unknown -0.219 0.042
69 247948_at AT5G57130 SMXL5, SMAX1-like 5 -0.216 -0.134
70 263772_at AT2G06255 ELF4-L3, ELF4-like 3 -0.215 -0.008
71 267391_at AT2G44480 BGLU17, beta glucosidase 17 -0.212 0.238
72 259033_at AT3G09405 [Pectinacetylesterase family protein] -0.208 -0.078
73 261888_at AT1G80800 [pseudogene] -0.207 0.146
74 260067_at AT1G73780 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.206 0.552
75 255008_at AT4G10060 [Beta-glucosidase, GBA2 type family protein] -0.204 -0.019
76 263618_at AT2G04660 APC2, anaphase-promoting complex/cyclosome 2 -0.200 -0.124
77 246855_at AT5G26280 [TRAF-like family protein] -0.198 -0.117
78 259953_at AT1G74810 BOR5, REQUIRES HIGH BORON 5 -0.197 0.267
79 257021_at AT3G19710 BCAT4, branched-chain aminotransferase4 -0.193 -0.443
80 260260_at AT1G68540 CCRL6, cinnamoyl coA reductase-like 6, TKPR2, tetraketide alpha-pyrone reductase 2 -0.189 0.026
81 264549_at AT1G09440 [Protein kinase superfamily protein] -0.185 0.098
82 261715_at AT1G18485 [Pentatricopeptide repeat (PPR) superfamily protein] -0.183 -0.084
83 264454_at AT1G10320 [Zinc finger C-x8-C-x5-C-x3-H type family protein] -0.181 0.083
84 255281_at AT4G04970 ATGSL01, GLUCAN SYNTHASE LIKE 1, ATGSL1, GLUCAN SYNTHASE LIKE-1, GSL01, GSL1, glucan synthase-like 1 -0.180 -0.085
85 249601_at AT5G37980 [Zinc-binding dehydrogenase family protein] -0.179 -0.020
86 246103_at AT5G28640 AN3, ANGUSTIFOLIA 3, ATGIF1, ARABIDOPSIS GRF1-INTERACTING FACTOR 1, GIF, GRF1-INTERACTING FACTOR, GIF1, GRF1-INTERACTING FACTOR 1 -0.176 0.084
87 246104_at AT5G28650 ATWRKY74, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY74, WRKY DNA-binding protein 74 -0.170 -0.278
88 265086_at AT1G03770 ATRING1B, ARABIDOPSIS THALIANA RING 1B, RING1B, RING 1B -0.170 -0.004
89 250381_at AT5G11610 [Exostosin family protein] -0.169 -0.058
90 261100_at AT1G63020 NRPD1, NRPD1A, nuclear RNA polymerase D1A, POL IVA, NUCLEAR RNA POLYMERASE D 1A, SDE4, SMD2, SILENCING MOVEMENT DEFICIENT 2 -0.168 0.065
91 256714_at AT2G34080 [Cysteine proteinases superfamily protein] -0.168 0.016
92 249905_at AT5G22720 [F-box/RNI-like superfamily protein] -0.166 -0.059
93 245737_at AT1G44160 [HSP40/DnaJ peptide-binding protein] -0.162 0.116
94 245106_at AT2G41650 unknown -0.161 0.009
95 256525_at AT1G66180 [Eukaryotic aspartyl protease family protein] -0.147 0.084
96 267289_at AT2G23770 LYK4, LysM-containing receptor-like kinase 4 -0.147 0.044
97 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 -0.145 -0.070
98 262264_at AT1G42470 [Patched family protein] -0.144 0.192
99 255579_at AT4G01460 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.142 0.075