4.0:Information of module
ref6-1
In comparison with Shoot dark control 7h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 2.084e-26
GO:0009611 response to wounding BP 3.611e-25
GO:0042221 response to chemical BP 1.100e-22
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 8.765e-10
GO:0016036 cellular response to phosphate starvatio... BP 2.570e-08
GO:0019374 galactolipid metabolic process BP 5.551e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ref6-1		 Log2 signal ratio
Shoot dark control 7h
1 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.790 0.050
2 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.462 0.082
3 251986_at AT3G53310 [AP2/B3-like transcriptional factor family protein] 0.359 0.139
4 257644_at AT3G25780 AOC3, allene oxide cyclase 3 0.336 -0.522
5 261037_at AT1G17420 ATLOX3, Arabidopsis thaliana lipoxygenase 3, LOX3, lipoxygenase 3 0.326 -0.754
6 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.310 -0.211
7 253643_at AT4G29780 unknown 0.291 -0.313
8 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.276 -0.206
9 250098_at AT5G17350 unknown 0.267 -0.271
10 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.266 -0.039
11 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) 0.255 0.099
12 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 0.250 -0.147
13 265723_at AT2G32140 [transmembrane receptors] 0.231 -0.265
14 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 0.222 0.030
15 249245_at AT5G42280 [Cysteine/Histidine-rich C1 domain family protein] 0.222 -0.078
16 267411_at AT2G34930 [disease resistance family protein / LRR family protein] 0.218 -0.363
17 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 0.213 -0.519
18 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.205 -0.200
19 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.197 -0.667
20 266316_at AT2G27080 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.197 -0.310
21 246949_at AT5G25140 CYP71B13, cytochrome P450, family 71, subfamily B, polypeptide 13 0.182 0.066
22 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 0.182 -0.493
23 263236_at AT1G10470 ARR4, response regulator 4, ATRR1, RESPONCE REGULATOR 1, IBC7, INDUCED BY CYTOKININ 7, MEE7, maternal effect embryo arrest 7 0.173 -0.097
24 262743_at AT1G29020 [Calcium-binding EF-hand family protein] 0.171 0.004
25 266246_at AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 0.169 -0.277
26 249567_at AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.169 -0.141
27 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.169 -0.188
28 262211_at AT1G74930 ORA47 0.167 -0.205
29 254784_at AT4G12720 AtNUDT7, Arabidopsis thaliana Nudix hydrolase homolog 7, GFG1, GROWTH FACTOR GENE 1, NUDT7 0.161 0.034
30 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.160 0.092
31 250875_at AT5G04020 [calmodulin binding] 0.155 0.225
32 253696_at AT4G29740 ATCKX4, CKX4, cytokinin oxidase 4 0.154 -0.253
33 257254_at AT3G21950 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.154 -0.596
34 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a 0.154 -0.113
35 253284_at AT4G34150 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.153 -0.281
36 264787_at AT2G17840 ERD7, EARLY-RESPONSIVE TO DEHYDRATION 7 0.153 0.130
37 267623_at AT2G39650 unknown 0.152 -0.386
38 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.150 -0.547
39 252827_at AT4G39950 CYP79B2, cytochrome P450, family 79, subfamily B, polypeptide 2 0.149 -1.011
40 262047_at AT1G80160 GLYI7, glyoxylase I 7 -0.661 1.474
41 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 -0.646 0.987
42 264166_at AT1G65370 [TRAF-like family protein] -0.591 0.036
43 248888_at AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 -0.585 -0.190
44 247514_at AT5G61640 ATMSRA1, ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, PMSR1, peptidemethionine sulfoxide reductase 1 -0.522 0.309
45 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 -0.511 1.047
46 249427_at AT5G39850 [Ribosomal protein S4] -0.444 -0.064
47 250182_at AT5G14470 AtGALK2, GALK2, galactokinase 2 -0.441 1.121
48 251346_at AT3G60980 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.434 0.275
49 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 -0.414 0.432
50 252081_at AT3G51910 AT-HSFA7A, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, HSFA7A, heat shock transcription factor A7A -0.401 0.408
51 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 -0.390 -0.267
52 267168_at AT2G37770 AKR4C9, Aldo-keto reductase family 4 member C9, ChlAKR, Chloroplastic aldo-keto reductase -0.381 -0.210
53 255980_at AT1G33970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.366 0.433
54 250748_at AT5G05710 [Pleckstrin homology (PH) domain superfamily protein] -0.362 0.364
55 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.354 0.264
56 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.350 0.474
57 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.344 0.333
58 260771_at AT1G49160 WNK7 -0.342 0.299
59 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.336 0.393
60 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 -0.330 0.684
61 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] -0.301 0.111
62 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 -0.300 1.417
63 254251_at AT4G23300 CRK22, cysteine-rich RLK (RECEPTOR-like protein kinase) 22 -0.287 -0.121
64 257369_at AT2G35550 ATBPC7, BASIC PENTACYSTEINE 7, BBR, BPC7, basic pentacysteine 7 -0.287 0.159
65 259743_at AT1G71140 [MATE efflux family protein] -0.286 -0.340
66 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 -0.285 0.098
67 251623_at AT3G57390 AGL18, AGAMOUS-like 18 -0.279 0.239
68 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] -0.277 0.310
69 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 -0.273 0.176
70 248236_at AT5G53870 AtENODL1, ENODL1, early nodulin-like protein 1 -0.266 0.301
71 260201_at AT1G67600 [Acid phosphatase/vanadium-dependent haloperoxidase-related protein] -0.263 0.180
72 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 -0.262 0.096
73 254197_at AT4G24040 ATTRE1, TRE1, trehalase 1 -0.235 0.883
74 245119_at AT2G41640 [Glycosyltransferase family 61 protein] -0.235 0.641
75 266156_at AT2G28110 FRA8, FRAGILE FIBER 8, IRX7, IRREGULAR XYLEM 7 -0.229 0.582
76 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A -0.229 0.116
77 251750_at AT3G55710 [UDP-Glycosyltransferase superfamily protein] -0.221 -0.231