4.0:Information of module
total mRNA eif3k
In comparison with Col in Pi deficiency medium help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0043094 cellular metabolic compound salvage BP 6.837e-06
GO:0009853 photorespiration BP 1.474e-05
GO:0044281 small molecule metabolic process BP 1.020e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043085 positive regulation of catalytic activit... BP 4.930e-03
GO:0044093 positive regulation of molecular functio... BP 4.930e-03
GO:0045017 glycerolipid biosynthetic process BP 5.197e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
total mRNA eif3k		 Log2 signal ratio
Col in Pi deficiency medium
1 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.658 0.002
2 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A 0.412 0.027
3 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.403 0.015
4 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.386 0.014
5 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.208 0.065
6 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 0.179 0.078
7 245076_at AT2G23170 GH3.3 0.164 0.130
8 252751_at AT3G43430 [RING/U-box superfamily protein] 0.145 0.020
9 255108_at AT4G08740 unknown 0.139 -0.071
10 249051_at AT5G44390 [FAD-binding Berberine family protein] 0.133 0.068
11 262277_at AT1G68650 [Uncharacterized protein family (UPF0016)] 0.131 0.025
12 254201_at AT4G24130 unknown 0.125 0.051
13 257340_at AT2G10760 [copia-like retrotransposon family, has a 6.5e-285 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] 0.118 0.016
14 266488_at AT2G47670 PMEI6, PECTIN METHYLESTERASE INHIBITOR 6 0.117 -0.067
15 253334_at AT4G33360 FLDH, farnesol dehydrogenase 0.103 0.020
16 255901_at AT1G17890 GER2 0.094 0.019
17 266250_at AT2G27870 [similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G22350.1)] 0.093 0.012
18 261942_at AT1G22590 AGL87, AGAMOUS-like 87 -0.295 -0.034
19 253336_at AT4G33250 ATTIF3K1, EIF3K, eukaryotic translation initiation factor 3K, TIF3K1 -0.269 0.022
20 257502_at AT1G78110 unknown -0.195 0.026
21 257273_at AT3G28030 UVH3, ULTRAVIOLET HYPERSENSITIVE 3, UVR1, UV REPAIR DEFECTIVE 1 -0.175 -0.012
22 251981_at AT3G53080 [D-galactoside/L-rhamnose binding SUEL lectin protein] -0.160 -0.027
23 250696_at AT5G06790 unknown -0.156 -0.004
24 259913_at AT1G72660 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.152 0.098
25 249935_at AT5G22420 FAR7, fatty acid reductase 7 -0.147 0.031
26 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 -0.143 0.019
27 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.137 -0.108
28 267037_at AT2G38320 TBL34, TRICHOME BIREFRINGENCE-LIKE 34 -0.136 -0.135
29 246808_at AT5G27110 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.129 -0.061
30 258263_at AT3G15780 unknown -0.128 0.041
31 254993_at AT4G10730 [Protein kinase superfamily protein] -0.125 -0.066
32 257337_at ATMG00060 NAD5, NADH DEHYDROGENASE SUBUNIT 5, NAD5.3, NADH DEHYDROGENASE SUBUNIT 5.3, NAD5C, NADH dehydrogenase subunit 5C -0.124 0.056
33 245454_at AT4G16920 [Disease resistance protein (TIR-NBS-LRR class) family] -0.121 0.012