4.0:Information of module
piffq 3d WL
In comparison with GA4 3 h (ga1 seed) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 5.756e-44
GO:0009451 RNA modification BP 3.892e-32
GO:0032259 methylation BP 4.282e-29
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 1.908e-11
GO:0042221 response to chemical BP 2.167e-10
GO:0009725 response to hormone BP 3.274e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
piffq 3d WL		 Log2 signal ratio
GA4 3 h (ga1 seed)
1 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.587 -0.004
2 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.458 -1.110
3 246299_at AT3G51810 AT3, ATEM1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, EM1, LATE EMBRYOGENESIS ABUNDANT 1, GEA1, GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1 0.381 1.527
4 258327_at AT3G22640 PAP85 0.361 1.648
5 263753_at AT2G21490 LEA, dehydrin LEA 0.352 1.466
6 253870_at AT4G27530 unknown 0.343 1.348
7 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 0.321 -0.563
8 254440_at AT4G21020 [Late embryogenesis abundant protein (LEA) family protein] 0.320 1.468
9 262069_at AT1G80090 CBSX4, CBS domain containing protein 4 0.316 0.480
10 249937_at AT5G22470 [NAD+ ADP-ribosyltransferases] 0.314 1.315
11 247024_at AT5G66985 unknown 0.305 0.300
12 245335_at AT4G16160 ATOEP16-2, ATOEP16-S 0.303 1.449
13 254095_at AT4G25140 OLE1, OLEOSIN 1, OLEO1, oleosin 1 0.298 1.789
14 255807_at AT4G10270 [Wound-responsive family protein] 0.297 0.303
15 247061_at AT5G66780 unknown 0.291 1.649
16 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 0.279 1.560
17 251838_at AT3G54940 [Papain family cysteine protease] 0.277 1.411
18 259167_at AT3G01570 [Oleosin family protein] 0.276 1.298
19 266392_at AT2G41280 ATM10, M10 0.263 1.586
20 263515_at AT2G21640 unknown 0.258 0.232
21 266393_at AT2G41260 ATM17, M17 0.256 1.898
22 250152_at AT5G15120 unknown 0.256 0.369
23 261305_at AT1G48470 GLN1;5, glutamine synthetase 1;5 0.254 0.849
24 264612_at AT1G04560 [AWPM-19-like family protein] 0.250 1.474
25 246242_at AT4G36600 [Late embryogenesis abundant (LEA) protein] 0.244 0.653
26 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] 0.238 1.583
27 262580_at AT1G15330 [Cystathionine beta-synthase (CBS) protein] 0.234 0.803
28 255007_at AT4G10020 AtHSD5, hydroxysteroid dehydrogenase 5, HSD5, hydroxysteroid dehydrogenase 5 0.232 1.311
29 259578_at AT1G27990 unknown 0.232 1.064
30 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.223 0.386
31 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.220 -0.025
32 250214_at AT5G13870 EXGT-A4, endoxyloglucan transferase A4, XTH5, xyloglucan endotransglucosylase/hydrolase 5 0.215 0.366
33 250624_at AT5G07330 unknown 0.210 1.476
34 262679_at AT1G75830 LCR67, low-molecular-weight cysteine-rich 67, PDF1.1, PLANT DEFENSIN 1.1 0.209 1.726
35 260917_at AT1G02700 unknown 0.206 1.258
36 267579_at AT2G42000 AtMT4a, Arabidopsis thaliana metallothionein 4a 0.198 1.304
37 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.193 -0.616
38 255893_at AT1G17960 [Threonyl-tRNA synthetase] 0.193 -0.023
39 266503_at AT2G47780 [Rubber elongation factor protein (REF)] 0.191 0.452
40 246273_at AT4G36700 [RmlC-like cupins superfamily protein] 0.191 1.203
41 248435_at AT5G51210 OLEO3, oleosin3 0.188 1.107
42 259574_at AT1G35310 MLP168, MLP-like protein 168 0.185 -0.128
43 263492_at AT2G42560 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 0.182 0.938
44 248213_at AT5G53660 AtGRF7, growth-regulating factor 7, GRF7, growth-regulating factor 7 0.181 0.054
45 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 0.179 1.434
46 263385_at AT2G40170 ATEM6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, EM6, EARLY METHIONINE-LABELLED 6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6 0.169 1.429
47 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.160 0.466
48 247904_at AT5G57390 AIL5, AINTEGUMENTA-like 5, CHO1, CHOTTO 1, EMK, EMBRYOMAKER, PLT5, PLETHORA 5 0.160 0.869
49 258323_at AT3G22750 [Protein kinase superfamily protein] 0.153 -0.193
50 251196_at AT3G62950 [Thioredoxin superfamily protein] 0.151 0.250
51 262001_at AT1G33790 [jacalin lectin family protein] 0.151 0.591
52 250576_at AT5G08250 [Cytochrome P450 superfamily protein] 0.151 -0.009
53 247553_at AT5G60910 AGL8, AGAMOUS-like 8, FUL, FRUITFULL 0.150 -0.165
54 261002_at AT1G26520 [Cobalamin biosynthesis CobW-like protein] 0.148 0.473
55 249384_at AT5G39890 unknown 0.147 0.087
56 257196_at AT3G23790 AAE16, acyl activating enzyme 16 0.145 0.526
57 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.141 0.360
58 267036_at AT2G38465 unknown 0.141 1.204
59 251147_at AT3G63480 [ATP binding microtubule motor family protein] 0.140 0.189
60 245502_at AT4G15640 unknown 0.137 0.302
61 257930_at AT3G17010 REM22, REPRODUCTIVE MERISTEM 22 0.137 -0.088
62 258966_at AT3G10690 GYRA, DNA GYRASE A 0.136 0.301
63 261124_at AT1G04900 unknown 0.135 0.313
64 263679_at AT1G59990 EMB3108, EMBRYO DEFECTIVE 3108, HS3, HEAVY SEED 3, RH22, RNA helicase 22 0.134 0.189
65 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.133 -0.226
66 266957_at AT2G34640 HMR, HEMERA, PTAC12, plastid transcriptionally active 12, TAC12 0.133 0.191
67 262074_at AT1G59670 ATGSTU15, glutathione S-transferase TAU 15, GSTU15, glutathione S-transferase TAU 15 0.132 0.027
68 246568_at AT5G14960 DEL2, DP-E2F-like 2, E2FD, E2L1 0.132 0.739
69 260865_at AT1G43760 [DNAse I-like superfamily protein] 0.131 -0.157
70 251081_at AT5G02070 [Protein kinase family protein] 0.129 0.118
71 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.128 -0.016
72 253627_at AT4G30650 [Low temperature and salt responsive protein family] 0.128 -0.656
73 245580_at AT4G14820 [Pentatricopeptide repeat (PPR) superfamily protein] 0.127 0.221
74 257994_at AT3G19920 unknown 0.127 1.323
75 246816_at AT5G27230 [Frigida-like protein] 0.126 0.417
76 252581_at AT3G45500 unknown 0.126 0.064
77 259363_at AT1G13270 MAP1B, METHIONINE AMINOPEPTIDASE 1B, MAP1C, methionine aminopeptidase 1B 0.126 0.008
78 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] 0.125 -0.575
79 252995_at AT4G38370 [Phosphoglycerate mutase family protein] 0.124 0.060
80 250222_at AT5G14050 [Transducin/WD40 repeat-like superfamily protein] 0.124 0.280
81 251010_at AT5G02550 unknown 0.123 -0.521
82 260735_at AT1G17610 CHS1, CHILLING SENSITIVE 1 0.123 -0.047
83 253233_at AT4G34290 [SWIB/MDM2 domain superfamily protein] 0.123 0.223
84 256797_at AT3G18600 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.122 0.283
85 246249_at AT4G36680 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.121 0.322
86 246057_at AT5G08400 unknown 0.120 0.310
87 255455_at AT4G02930 [GTP binding Elongation factor Tu family protein] 0.120 0.275
88 251791_at AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 0.120 0.028
89 267253_at AT2G22960 [alpha/beta-Hydrolases superfamily protein] 0.119 0.172
90 263565_at AT2G15390 atfut4, FUT4, fucosyltransferase 4 0.117 -0.117
91 256146_at AT1G48760 delta-ADR, delta-adaptin, PAT4, PROTEIN-AFFECTED TRAFFICKING 4 0.117 -0.089
92 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.117 0.026
93 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -0.952 -0.804
94 264510_at AT1G09530 PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, phytochrome interacting factor 3, POC1, PHOTOCURRENT 1 -0.716 0.091
95 265584_at AT2G20180 PIF1, PHY-INTERACTING FACTOR 1, PIL5, phytochrome interacting factor 3-like 5 -0.619 0.640
96 265248_at AT2G43010 AtPIF4, PIF4, phytochrome interacting factor 4, SRL2 -0.540 -0.316
97 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 -0.458 -0.482
98 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 -0.435 -0.438
99 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.423 -0.207
100 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 -0.361 0.136
101 260135_at AT1G66400 CML23, calmodulin like 23 -0.348 -0.034
102 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] -0.313 0.248
103 249484_at AT5G38970 ATBR6OX, BR6OX, BRASSINOSTEROID-6-OXIDASE, BR6OX1, brassinosteroid-6-oxidase 1, CYP85A1 -0.298 0.062
104 250327_at AT5G12050 unknown -0.283 -0.820
105 258196_at AT3G13980 unknown -0.258 -0.684
106 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.256 -0.150
107 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.252 0.022
108 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.248 -0.028
109 254716_at AT4G13560 UNE15, unfertilized embryo sac 15 -0.244 0.096
110 249124_at AT5G43740 [Disease resistance protein (CC-NBS-LRR class) family] -0.232 -0.204
111 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 -0.231 -0.075
112 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 -0.229 0.095
113 258581_at AT3G04160 unknown -0.220 0.577
114 264495_at AT1G27380 RIC2, ROP-interactive CRIB motif-containing protein 2 -0.214 0.028
115 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.208 0.292
116 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 -0.206 0.309
117 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.197 -0.067
118 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.196 -0.489
119 261684_at AT1G47400 unknown -0.195 -0.713
120 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 -0.190 0.448
121 259834_at AT1G69570 [Dof-type zinc finger DNA-binding family protein] -0.182 -0.298
122 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.176 0.059
123 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 -0.176 0.113
124 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -0.176 -0.408
125 253332_at AT4G33420 [Peroxidase superfamily protein] -0.173 -0.849
126 250054_at AT5G17860 CAX7, calcium exchanger 7 -0.172 0.187
127 247879_at AT5G57770 unknown -0.171 -0.010
128 260011_at AT1G68110 [ENTH/ANTH/VHS superfamily protein] -0.171 -0.153
129 252612_at AT3G45160 [Putative membrane lipoprotein] -0.170 -0.800
130 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.169 -1.043
131 249058_at AT5G44510 TAO1, target of AVRB operation1 -0.163 -0.146
132 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 -0.162 -0.693
133 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] -0.162 0.219
134 253915_at AT4G27280 [Calcium-binding EF-hand family protein] -0.161 0.211
135 259850_at AT1G72240 unknown -0.156 -0.186
136 263738_at AT1G60060 [Serine/threonine-protein kinase WNK (With No Lysine)-related] -0.153 0.076
137 249775_at AT5G24160 SQE6, squalene monoxygenase 6 -0.152 0.550
138 249807_at AT5G23870 [Pectinacetylesterase family protein] -0.151 -0.357
139 255854_at AT1G67050 unknown -0.150 -0.360
140 245302_at AT4G17695 KAN3, KANADI 3 -0.148 0.107
141 265877_at AT2G42380 ATBZIP34, BZIP34 -0.147 -0.200
142 260941_at AT1G44970 [Peroxidase superfamily protein] -0.147 -0.795
143 250823_at AT5G05180 unknown -0.145 0.290
144 259432_at AT1G01520 ASG4, ALTERED SEED GERMINATION 4 -0.145 0.648
145 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 -0.145 -0.642
146 248465_at AT5G51200 EMB3142, EMBRYO DEFECTIVE 3142 -0.144 0.255
147 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 -0.143 0.475
148 253047_at AT4G37295 unknown -0.140 0.100
149 259839_at AT1G52190 AtNPF1.2, NPF1.2, NRT1/ PTR family 1.2, NRT1.11, nitrate transporter 1.11 -0.139 -1.255
150 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.138 -0.006
151 266356_at AT2G32300 UCC1, uclacyanin 1 -0.136 -0.876
152 257929_at AT3G16980 NRPB9A, NRPD9A, NRPE9A -0.136 0.887
153 265645_at AT2G27370 CASP3, Casparian strip membrane domain protein 3 -0.136 -0.606
154 260744_at AT1G15010 unknown -0.131 -0.180
155 246151_at AT5G19950 unknown -0.129 0.518
156 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 -0.127 -0.702
157 249860_at AT5G22860 [Serine carboxypeptidase S28 family protein] -0.127 -0.182
158 253434_at AT4G32500 AKT5, K+ transporter 5, KT5, K+ transporter 5 -0.127 0.088
159 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 -0.126 -0.795
160 256659_at AT3G12020 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.125 0.224
161 252429_at AT3G47500 CDF3, cycling DOF factor 3 -0.124 -0.237
162 245912_at AT5G19600 SULTR3;5, sulfate transporter 3;5 -0.122 -0.490
163 248801_at AT5G47370 HAT2 -0.121 -0.054
164 252011_at AT3G52720 ACA1, alpha carbonic anhydrase 1, ATACA1, A. THALIANA ALPHA CARBONIC ANHYDRASE 1, CAH1, CARBONIC ANHYDRASE 1 -0.121 -0.885
165 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.120 -1.147
166 253571_at AT4G31000 [Calmodulin-binding protein] -0.119 0.188
167 251879_at AT3G54200 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.116 -0.328
168 256692_at AT3G32050 unknown -0.115 0.143
169 246104_at AT5G28650 ATWRKY74, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY74, WRKY DNA-binding protein 74 -0.114 -0.049
170 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.114 -0.529
171 260840_at AT1G29050 TBL38, TRICHOME BIREFRINGENCE-LIKE 38 -0.113 -0.289
172 248015_at AT5G56370 [F-box/RNI-like/FBD-like domains-containing protein] -0.112 -0.050
173 263227_at AT1G30750 unknown -0.112 -0.735
174 258137_at AT3G24515 UBC37, ubiquitin-conjugating enzyme 37 -0.111 0.047
175 254870_at AT4G11900 [S-locus lectin protein kinase family protein] -0.110 -0.118
176 248215_at AT5G53680 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.109 0.122
177 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] -0.107 -0.564
178 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.107 0.062
179 249208_at AT5G42650 AOS, allene oxide synthase, CYP74A, CYTOCHROME P450 74A, DDE2, DELAYED DEHISCENCE 2 -0.107 -0.755
180 263782_at AT2G46380 unknown -0.107 0.082
181 247714_at AT5G59340 WOX2, WUSCHEL related homeobox 2 -0.104 0.220
182 247170_at AT5G65530 [Protein kinase superfamily protein] -0.104 0.217
183 245228_at AT3G29810 COBL2, COBRA-like protein 2 precursor -0.103 -0.122