4.0:Information of module
piffq 2d WL
In comparison with cry1 low light help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0048609 multicellular organismal reproductive pr... BP 1.250e-17
GO:0010162 seed dormancy process BP 3.213e-17
GO:0022611 dormancy process BP 3.213e-17
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009628 response to abiotic stimulus BP 4.707e-15
GO:0006790 sulfur compound metabolic process BP 3.754e-14
GO:0044283 small molecule biosynthetic process BP 1.152e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
piffq 2d WL		 Log2 signal ratio
cry1 low light
1 254440_at AT4G21020 [Late embryogenesis abundant protein (LEA) family protein] 0.823 0.197
2 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.724 -0.143
3 266393_at AT2G41260 ATM17, M17 0.665 0.146
4 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.630 0.164
5 250624_at AT5G07330 unknown 0.587 0.286
6 264079_at AT2G28490 [RmlC-like cupins superfamily protein] 0.577 0.438
7 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 0.574 0.044
8 249039_at AT5G44310 [Late embryogenesis abundant protein (LEA) family protein] 0.572 0.067
9 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] 0.564 0.498
10 246242_at AT4G36600 [Late embryogenesis abundant (LEA) protein] 0.557 0.205
11 263753_at AT2G21490 LEA, dehydrin LEA 0.546 0.130
12 264494_at AT1G27461 unknown 0.536 0.065
13 251838_at AT3G54940 [Papain family cysteine protease] 0.536 0.354
14 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 0.532 0.354
15 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] 0.532 0.192
16 254095_at AT4G25140 OLE1, OLEOSIN 1, OLEO1, oleosin 1 0.523 0.565
17 246299_at AT3G51810 AT3, ATEM1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, EM1, LATE EMBRYOGENESIS ABUNDANT 1, GEA1, GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1 0.520 0.233
18 265255_at AT2G28420 GLYI8, glyoxylase I 8 0.505 0.093
19 266654_at AT2G25890 [Oleosin family protein] 0.491 0.182
20 266392_at AT2G41280 ATM10, M10 0.490 0.069
21 245335_at AT4G16160 ATOEP16-2, ATOEP16-S 0.479 0.191
22 258327_at AT3G22640 PAP85 0.472 0.367
23 263881_at AT2G21820 unknown 0.469 0.195
24 247061_at AT5G66780 unknown 0.451 0.201
25 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 0.432 0.306
26 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 0.431 0.392
27 263385_at AT2G40170 ATEM6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, EM6, EARLY METHIONINE-LABELLED 6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6 0.427 0.133
28 256338_at AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 0.422 0.176
29 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B 0.420 0.257
30 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 0.417 0.499
31 264612_at AT1G04560 [AWPM-19-like family protein] 0.412 0.465
32 256938_at AT3G22500 ATECP31, LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31 0.411 0.025
33 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 0.401 0.578
34 257853_at AT3G12960 SMP1, seed maturation protein 1 0.398 -0.001
35 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 0.398 0.246
36 260859_at AT1G43780 scpl44, serine carboxypeptidase-like 44 0.395 0.055
37 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] 0.394 0.263
38 265891_at AT2G15010 [Plant thionin] 0.393 0.202
39 260917_at AT1G02700 unknown 0.388 0.241
40 259167_at AT3G01570 [Oleosin family protein] 0.380 0.380
41 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 0.378 0.307
42 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 0.371 0.245
43 259578_at AT1G27990 unknown 0.367 0.246
44 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 0.363 0.138
45 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 0.352 0.407
46 246273_at AT4G36700 [RmlC-like cupins superfamily protein] 0.352 0.300
47 252515_at AT3G46230 ATHSP17.4, ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, HSP17.4, heat shock protein 17.4 0.351 -0.103
48 264888_at AT1G23070 unknown 0.351 0.114
49 252137_at AT3G50980 XERO1, dehydrin xero 1 0.346 0.078
50 253895_at AT4G27160 AT2S3, SESA3, seed storage albumin 3 0.342 0.676
51 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE 0.335 0.102
52 264187_at AT1G54860 [Glycoprotein membrane precursor GPI-anchored] 0.332 0.091
53 257994_at AT3G19920 unknown 0.330 0.164
54 257059_at AT3G15280 unknown 0.326 0.098
55 263138_at AT1G65090 unknown 0.325 0.098
56 267036_at AT2G38465 unknown 0.324 -0.063
57 267263_at AT2G23110 [Late embryogenesis abundant protein, group 6] 0.312 0.190
58 251580_at AT3G58450 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.309 0.147
59 253494_at AT4G31830 unknown 0.309 0.073
60 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 0.309 0.141
61 263175_at AT1G05510 OBAP1a, Oil Body-Associated Protein 1a 0.306 0.300
62 259314_at AT3G05260 [NAD(P)-binding Rossmann-fold superfamily protein] 0.305 0.195
63 248915_at AT5G45690 unknown 0.302 0.145
64 256459_at AT1G36180 ACC2, acetyl-CoA carboxylase 2 0.302 -0.137
65 254203_at AT4G24150 AtGRF8, growth-regulating factor 8, GRF8, growth-regulating factor 8 0.301 0.024
66 267026_at AT2G38340 DREB19, dehydration response element-binding protein 19 0.290 -0.033
67 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 0.289 0.884
68 262679_at AT1G75830 LCR67, low-molecular-weight cysteine-rich 67, PDF1.1, PLANT DEFENSIN 1.1 0.287 -0.030
69 266143_at AT2G38905 [Low temperature and salt responsive protein family] 0.279 0.204
70 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] 0.274 0.096
71 255893_at AT1G17960 [Threonyl-tRNA synthetase] 0.269 -0.071
72 255048_at AT4G09600 GASA3, GAST1 protein homolog 3 0.259 0.267
73 255007_at AT4G10020 AtHSD5, hydroxysteroid dehydrogenase 5, HSD5, hydroxysteroid dehydrogenase 5 0.258 0.036
74 262069_at AT1G80090 CBSX4, CBS domain containing protein 4 0.254 0.105
75 263492_at AT2G42560 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 0.253 0.125
76 265095_at AT1G03880 CRB, CRUCIFERIN B, CRU2, cruciferin 2 0.252 0.551
77 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 0.245 -0.036
78 261936_at AT1G22600 [Late embryogenesis abundant protein (LEA) family protein] 0.242 0.059
79 249772_at AT5G24130 unknown 0.242 -0.021
80 253902_at AT4G27170 AT2S4, SESA4, seed storage albumin 4 0.242 0.420
81 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related 0.238 0.207
82 249246_at AT5G42290 [transcription activator-related] 0.237 0.070
83 256931_at AT3G22490 [Seed maturation protein] 0.230 -0.047
84 258240_at AT3G27660 OLE3, OLEOSIN 3, OLEO4, oleosin 4 0.229 0.061
85 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.224 -0.124
86 262580_at AT1G15330 [Cystathionine beta-synthase (CBS) protein] 0.224 0.090
87 267286_at AT2G23640 RTNLB13, Reticulan like protein B13 0.223 0.108
88 265084_at AT1G03790 AtTZF4, SOM, SOMNUS, TZF4, Tandem CCCH Zinc Finger protein 4 0.209 0.114
89 246229_at AT4G37160 sks15, SKU5 similar 15 0.205 -0.131
90 260978_at AT1G53540 [HSP20-like chaperones superfamily protein] 0.202 -0.010
91 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -0.859 0.069
92 264510_at AT1G09530 PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, phytochrome interacting factor 3, POC1, PHOTOCURRENT 1 -0.764 -0.015
93 265584_at AT2G20180 PIF1, PHY-INTERACTING FACTOR 1, PIL5, phytochrome interacting factor 3-like 5 -0.510 0.050
94 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 -0.457 -0.001
95 265248_at AT2G43010 AtPIF4, PIF4, phytochrome interacting factor 4, SRL2 -0.449 0.118
96 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 -0.383 -0.210
97 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 -0.196 -0.079
98 264346_at AT1G12010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.189 -0.021
99 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.184 0.246
100 259839_at AT1G52190 AtNPF1.2, NPF1.2, NRT1/ PTR family 1.2, NRT1.11, nitrate transporter 1.11 -0.177 0.115
101 245696_at AT5G04190 PKS4, phytochrome kinase substrate 4 -0.176 0.108
102 254193_at AT4G23870 unknown -0.159 0.032
103 259982_at AT1G76410 ATL8 -0.150 0.041
104 256763_at AT3G16860 COBL8, COBRA-like protein 8 precursor -0.140 0.033
105 248197_at AT5G54190 PORA, protochlorophyllide oxidoreductase A -0.139 0.072
106 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.138 0.017
107 247047_at AT5G66650 unknown -0.136 -0.000
108 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.132 0.230
109 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a -0.132 -0.102
110 245811_at AT1G37537 [gypsy-like retrotransposon family, has a 1.5e-34 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.126 0.032
111 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] -0.126 -0.025
112 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.123 0.117
113 264200_at AT1G22650 A/N-InvD, alkaline/neutral invertase D -0.118 -0.035
114 266877_at AT2G44570 AtGH9B12, glycosyl hydrolase 9B12, GH9B12, glycosyl hydrolase 9B12 -0.116 0.010
115 245406_at AT4G17160 ATRAB2B, ATRABB1A, RAB GTPase homolog B1A, RABB1a, RAB GTPase homolog B1A -0.116 0.030
116 259002_at AT3G02000 ROXY1 -0.113 0.115
117 257927_at AT3G23240 ATERF1, ETHYLENE RESPONSE FACTOR 1, ERF1, ethylene response factor 1 -0.111 0.013
118 247912_at AT5G57480 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.111 0.002
119 245856_at AT5G28240 transposable element gene -0.109 0.021
120 266607_at AT2G46300 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.107 0.049
121 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.107 0.140
122 266715_at AT2G46780 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.107 0.061
123 257451_at AT1G05690 BT3, BTB and TAZ domain protein 3 -0.106 -0.039
124 261475_at AT1G14550 [Peroxidase superfamily protein] -0.105 0.033
125 253243_at AT4G34560 unknown -0.105 0.060
126 258385_at AT3G15510 ANAC056, Arabidopsis NAC domain containing protein 56, ATNAC2, NAC domain containing protein 2, NAC2, NAC domain containing protein 2, NARS1, NAC-REGULATED SEED MORPHOLOGY 1 -0.104 -0.108
127 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.104 -0.101
128 250223_at AT5G14070 ROXY2 -0.102 0.048
129 248776_at AT5G47900 unknown -0.102 0.035
130 249564_at AT5G38400 unknown -0.101 0.001
131 252052_at AT3G52600 AtCWIN2, AtcwINV2, cell wall invertase 2, CWINV2, cell wall invertase 2 -0.100 -0.092
132 248354_at AT5G52330 [TRAF-like superfamily protein] -0.100 0.041
133 264085_at AT2G31250 HEMA3 -0.099 0.018
134 259157_at AT3G05440 [C2 domain-containing protein] -0.098 0.009
135 264412_at AT1G43260 [hAT transposon superfamily protein] -0.098 0.011
136 263452_at AT2G22190 TPPE, trehalose-6-phosphate phosphatase E -0.096 -0.048
137 246815_at AT5G27220 [Frigida-like protein] -0.095 0.053
138 262454_at AT1G11190 BFN1, bifunctional nuclease i, ENDO1, ENDONUCLEASE 1 -0.094 -0.072
139 258608_at AT3G03020 unknown -0.093 -0.029
140 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 -0.091 -0.010
141 250349_at AT5G12000 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.090 0.069
142 252907_at AT4G39650 GGT2, gamma-glutamyl transpeptidase 2 -0.090 -0.007
143 258442_at AT3G01015 [TPX2 (targeting protein for Xklp2) protein family] -0.089 0.023
144 262765_at AT1G13150 CYP86C4, cytochrome P450, family 86, subfamily C, polypeptide 4 -0.089 -0.009
145 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.089 0.087
146 245838_at AT1G58410 [Disease resistance protein (CC-NBS-LRR class) family] -0.088 -0.051
147 252429_at AT3G47500 CDF3, cycling DOF factor 3 -0.087 0.088
148 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 -0.086 -0.027
149 266490_at AT2G07000 unknown -0.086 0.069
150 265494_at AT2G15680 AtCML30, CML30, calmodulin-like 30 -0.086 0.024
151 249053_at AT5G44440 [FAD-binding Berberine family protein] -0.085 0.524
152 263207_at AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 -0.085 -0.078
153 251336_at AT3G61190 BAP1, BON association protein 1 -0.085 -0.082
154 265321_at AT2G18280 AtTLP2, tubby like protein 2, TLP2, tubby like protein 2 -0.084 0.033
155 251865_at AT3G54930 [Protein phosphatase 2A regulatory B subunit family protein] -0.083 0.022
156 246992_at AT5G67430 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.083 0.095
157 246230_at AT4G36710 AtHAM4, Arabidopsis thaliana HAIRY MERISTEM 4, HAM4 -0.083 -0.009
158 245490_at AT4G16310 LDL3, LSD1-like 3 -0.082 0.035
159 264124_at AT1G79360 ATOCT2, organic cation/carnitine transporter 2, OCT2, ORGANIC CATION TRANSPORTER 2, OCT2, organic cation/carnitine transporter 2 -0.082 0.149
160 257527_at AT3G01880 unknown -0.081 0.024
161 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.081 0.077
162 267344_at AT2G44230 unknown -0.081 0.108
163 249903_at AT5G22690 [Disease resistance protein (TIR-NBS-LRR class) family] -0.081 -0.011
164 263118_at AT1G03090 MCCA -0.081 -0.019
165 267550_at AT2G32800 AP4.3A, LecRK-S.2, L-type lectin receptor kinase S.2 -0.081 0.063
166 260272_at AT1G80570 [RNI-like superfamily protein] -0.081 -0.092
167 247832_at AT5G58550 EOL2, ETO1-like 2 -0.080 -0.002
168 247071_at AT5G66640 DAR3, DA1-related protein 3 -0.079 -0.055
169 245428_at AT4G17570 GATA26, GATA transcription factor 26 -0.078 -0.043
170 257795_at AT3G15910 unknown -0.077 0.024
171 249274_at AT5G41860 unknown -0.076 -0.078
172 252339_at AT3G48900 [single-stranded DNA endonuclease family protein] -0.076 0.030
173 264788_at AT2G17880 DJC24, DNA J protein C24 -0.075 0.110
174 252011_at AT3G52720 ACA1, alpha carbonic anhydrase 1, ATACA1, A. THALIANA ALPHA CARBONIC ANHYDRASE 1, CAH1, CARBONIC ANHYDRASE 1 -0.075 0.032
175 261094_at AT1G62920 unknown -0.075 0.044
176 258306_at AT3G30530 ATBZIP42, basic leucine-zipper 42, bZIP42, basic leucine-zipper 42 -0.075 0.024
177 255733_at AT1G25400 unknown -0.074 -0.009
178 255876_at AT2G40480 unknown -0.074 -0.029
179 260073_at AT1G73660 SIS8, SUGAR INSENSITIVE 8 -0.074 -0.017