4.0:Information of module
rdo2 siliques
In comparison with Polysomal RNA 35S:AtCSP1-FH1 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019748 secondary metabolic process BP 3.340e-08
GO:0016144 S-glycoside biosynthetic process BP 5.001e-08
GO:0019758 glycosinolate biosynthetic process BP 5.001e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0080167 response to karrikin BP 1.820e-05
GO:1903409 reactive oxygen species biosynthetic pro... BP 3.523e-04
GO:0071407 cellular response to organic cyclic comp... BP 6.081e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
rdo2 siliques		 Log2 signal ratio
Polysomal RNA 35S:AtCSP1-FH1
1 255414_at AT4G03156 [small GTPase-related] 0.930 0.074
2 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.711 0.299
3 250798_at AT5G05340 PRX52, peroxidase 52 0.527 0.118
4 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 0.401 -0.018
5 250154_at AT5G15140 [Galactose mutarotase-like superfamily protein] 0.396 0.021
6 259189_at AT3G01700 AGP11, arabinogalactan protein 11, ATAGP11, ARABINOGALACTAN PROTEIN 11 0.394 0.087
7 255515_at AT4G02250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.378 0.058
8 246246_at AT4G37170 [Pentatricopeptide repeat (PPR) superfamily protein] 0.370 -0.017
9 264195_at AT1G22690 [Gibberellin-regulated family protein] 0.362 -0.020
10 254123_at AT4G24640 APPB1 0.358 0.033
11 254226_at AT4G23690 AtDIR6, Arabidopsis thaliana dirigent protein 6, DIR6, dirigent protein 6 0.350 -0.074
12 253332_at AT4G33420 [Peroxidase superfamily protein] 0.347 -0.098
13 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 0.338 -0.087
14 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 0.320 0.029
15 255250_at AT4G05100 AtMYB74, myb domain protein 74, MYB74, myb domain protein 74 0.318 -0.060
16 263046_at AT2G05380 GRP3S, glycine-rich protein 3 short isoform 0.310 0.070
17 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.307 0.079
18 262122_at AT1G02790 PGA4, polygalacturonase 4 0.305 0.017
19 258748_at AT3G05930 GLP8, germin-like protein 8 0.299 0.068
20 262608_at AT1G14120 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.299 -0.075
21 266828_at AT2G22930 [UDP-Glycosyltransferase superfamily protein] 0.294 0.054
22 257306_at AT3G30200 [Plant transposase (Ptta/En/Spm family)] 0.289 -0.033
23 245076_at AT2G23170 GH3.3 0.288 0.018
24 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.280 0.062
25 260007_at AT1G67870 [glycine-rich protein] 0.277 -0.026
26 263515_at AT2G21640 unknown 0.277 -0.055
27 257392_at AT2G24450 FLA3, FASCICLIN-like arabinogalactan protein 3 precursor 0.266 0.126
28 266325_at AT2G46630 unknown 0.264 -0.218
29 260438_at AT1G68290 ENDO2, endonuclease 2 0.261 -0.120
30 267352_at AT2G40050 [Cysteine/Histidine-rich C1 domain family protein] 0.260 -0.118
31 253877_at AT4G27435 unknown 0.257 0.130
32 250281_at AT5G13240 [transcription regulators] 0.255 -0.021
33 266172_at AT2G39010 PIP2;6, PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, PIP2E, plasma membrane intrinsic protein 2E 0.254 -0.036
34 245232_at AT4G25590 ADF7, actin depolymerizing factor 7 0.252 0.002
35 263144_at AT1G54070 [Dormancy/auxin associated family protein] 0.248 0.098
36 256787_at AT3G13790 ATBFRUCT1, ATCWINV1, ARABIDOPSIS THALIANA CELL WALL INVERTASE 1 0.247 0.052
37 259570_at AT1G20440 AtCOR47, COR47, cold-regulated 47, RD17 0.244 -0.031
38 262739_at AT1G28650 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.243 0.035
39 261946_at AT1G64560 0.243 0.115
40 264554_at AT1G09510 [NAD(P)-binding Rossmann-fold superfamily protein] 0.242 -0.080
41 246996_at AT5G67420 ASL39, ASYMMETRIC LEAVES2-LIKE 39, LBD37, LOB domain-containing protein 37 0.241 -0.005
42 253725_at AT4G29340 PRF4, profilin 4 0.238 0.086
43 265080_at AT1G55570 sks12, SKU5 similar 12 0.235 -0.064
44 247040_at AT5G67150 [HXXXD-type acyl-transferase family protein] 0.235 0.015
45 259015_at AT3G07350 unknown 0.233 -0.099
46 254697_at AT4G17970 ALMT12, aluminum-activated, malate transporter 12, ATALMT12, QUAC1, quick-activating anion channel 1 0.229 0.021
47 266918_at AT2G45800 PLIM2a, PLIM2a 0.228 0.100
48 257986_at AT3G20865 AGP40, arabinogalactan protein 40 0.217 0.039
49 261794_at AT1G16060 ADAP, ARIA-interacting double AP2 domain protein, WRI3, WRINKLED 3 0.217 0.034
50 260337_at AT1G69310 ATWRKY57, WRKY57, WRKY DNA-binding protein 57 0.215 0.008
51 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 0.215 0.034
52 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.214 -0.104
53 262018_at AT1G35617 unknown 0.211 0.034
54 248163_at AT5G54510 DFL1, DWARF IN LIGHT 1, GH3.6, Gretchen Hagen3.6 0.210 0.158
55 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.210 -0.026
56 264001_at AT2G22420 [Peroxidase superfamily protein] 0.209 0.063
57 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.202 -0.010
58 259809_at AT1G49800 unknown 0.202 0.074
59 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.201 0.036
60 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.199 -0.076
61 257334_at ATMG01370 ORF111D 0.199 -0.138
62 267154_at AT2G30870 ATGSTF10, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, ATGSTF4, ERD13, EARLY DEHYDRATION-INDUCED 13, GSTF10, glutathione S-transferase PHI 10 0.193 0.014
63 265022_at AT1G24520 BCP1, homolog of Brassica campestris pollen protein 1 0.192 0.110
64 252437_at AT3G47380 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.191 0.076
65 257670_at AT3G20340 unknown 0.189 0.011
66 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 0.187 0.020
67 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.185 -0.069
68 256109_at AT1G16950 unknown 0.182 0.021
69 257517_at AT3G16330 unknown 0.180 -0.001
70 258077_at AT3G26110 [Anther-specific protein agp1-like] 0.178 0.089
71 244962_at ATCG01050 NDHD 0.178 -0.025
72 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.177 0.012
73 244906_at ATMG00690 ORF240A 0.175 -0.009
74 262921_at AT1G79430 APL, ALTERED PHLOEM DEVELOPMENT, WDY, WOODY 0.175 -0.006
75 254327_at AT4G22490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.175 0.540
76 257715_at AT3G12750 AtZIP1, ZIP1, zinc transporter 1 precursor 0.173 0.028
77 247279_at AT5G64310 AGP1, arabinogalactan protein 1, ATAGP1 0.169 0.060
78 256937_at AT3G22620 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.168 0.046
79 252364_at AT3G48450 [RPM1-interacting protein 4 (RIN4) family protein] 0.167 0.056
80 259723_at AT1G60960 ATIRT3, IRON REGULATED TRANSPORTER 3, IRT3, iron regulated transporter 3 0.166 0.068
81 265277_at AT2G28410 unknown 0.165 0.035
82 247933_at AT5G56980 unknown 0.164 -0.016
83 248635_at AT5G49050 unknown 0.163 0.120
84 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.163 -0.075
85 250414_at AT5G11180 ATGLR2.6, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, GLR2.6, glutamate receptor 2.6 0.162 0.068
86 254090_at AT4G25010 AtSWEET14, SWEET14 0.162 0.011
87 257168_at AT3G24430 HCF101, HIGH-CHLOROPHYLL-FLUORESCENCE 101 0.162 -0.012
88 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.160 -0.023
89 259749_at AT1G71100 RSW10, RADIAL SWELLING 10 0.157 0.030
90 249046_at AT5G44400 [FAD-binding Berberine family protein] 0.156 -0.016
91 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 -0.476 -0.171
92 263431_at AT2G22170 PLAT2, PLAT domain protein 2 -0.448 0.033
93 266222_at AT2G28780 unknown -0.428 0.127
94 260812_at AT1G43650 UMAMIT22, Usually multiple acids move in and out Transporters 22 -0.350 -0.018
95 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.345 -0.027
96 246783_at AT5G27360 SFP2 -0.320 -0.047
97 246293_at AT3G56710 SIB1, sigma factor binding protein 1 -0.314 -0.034
98 254403_at AT4G21323 [Subtilase family protein] -0.313 0.086
99 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.286 0.125
100 257973_at AT3G20720 unknown -0.285 -0.020
101 260719_at AT1G48090 [calcium-dependent lipid-binding family protein] -0.285 0.038
102 253907_at AT4G27250 [NAD(P)-binding Rossmann-fold superfamily protein] -0.283 0.028
103 247640_at AT5G60610 [F-box/RNI-like superfamily protein] -0.282 -0.098
104 263829_at AT2G40435 unknown -0.279 -0.134
105 252350_at AT3G48190 ATATM, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ATM, ataxia-telangiectasia mutated, PIG1, pcd in male gametogenesis 1 -0.272 -0.105
106 248673_at AT5G48780 [disease resistance protein (TIR-NBS class)] -0.271 -0.035
107 247686_at AT5G59700 [Protein kinase superfamily protein] -0.264 0.018
108 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA -0.264 -0.044
109 245926_at AT5G24740 SHBY, SHRUBBY -0.252 0.026
110 248283_at AT5G52920 PKP-BETA1, plastidic pyruvate kinase beta subunit 1, PKP1, PLASTIDIAL PYRUVATE KINASE 1, PKP2, PLASTIDIAL PYRUVATE KINASE 2 -0.249 -0.007
111 249115_at AT5G43810 AGO10, ARGONAUTE 10, PNH, PINHEAD, ZLL, ZWILLE -0.246 0.132
112 259325_at AT3G05320 [O-fucosyltransferase family protein] -0.240 -0.037
113 248994_at AT5G45250 RPS4, RESISTANT TO P. SYRINGAE 4 -0.238 -0.171
114 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 -0.235 -0.011
115 256305_at AT1G30400 ABCC1, ATP-binding cassette C1, ATABCC1, Arabidopsis thaliana ATP-binding cassette C1, ATMRP1, ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, EST1, MRP1, multidrug resistance-associated protein 1 -0.234 -0.046
116 266079_at AT2G37860 LCD1, LOWER CELL DENSITY 1 -0.234 0.034
117 254248_at AT4G23270 CRK19, cysteine-rich RLK (RECEPTOR-like protein kinase) 19 -0.231 -0.200
118 252940_at AT4G39270 [Leucine-rich repeat protein kinase family protein] -0.229 0.061
119 261086_at AT1G17460 TRFL3, TRF-like 3 -0.228 0.148
120 260684_at AT1G17590 NF-YA8, nuclear factor Y, subunit A8 -0.227 -0.071
121 248540_at AT5G50160 ATFRO8, FERRIC REDUCTION OXIDASE 8, FRO8, ferric reduction oxidase 8 -0.225 -0.155
122 256011_at AT1G19230 [Riboflavin synthase-like superfamily protein] -0.223 -0.007
123 256323_at AT1G54920 unknown -0.221 -0.057
124 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 -0.220 -0.241
125 249047_at AT5G44410 [FAD-binding Berberine family protein] -0.218 -0.092
126 258818_at AT3G04580 EIN4, ETHYLENE INSENSITIVE 4 -0.216 -0.071
127 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.216 0.145
128 260412_at AT1G69830 AMY3, alpha-amylase-like 3, ATAMY3, ALPHA-AMYLASE-LIKE 3 -0.212 -0.052
129 250905_at AT5G03640 [Protein kinase superfamily protein] -0.209 0.046
130 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] -0.208 -0.037
131 245712_at AT5G04360 ATLDA, limit dextrinase, ATPU1, PULLULANASE 1, LDA, limit dextrinase, PU1, PULLULANASE 1 -0.206 -0.047
132 256274_at AT3G12080 emb2738, embryo defective 2738 -0.205 -0.055
133 258408_at AT3G17630 ATCHX19, cation/H+ exchanger 19, CHX19, cation/H+ exchanger 19 -0.205 -0.034
134 257075_at AT3G19670 ATPRP40B, pre-mRNA-processing protein 40B, PRP40B, pre-mRNA-processing protein 40B -0.205 -0.003
135 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.203 -0.058
136 264355_at AT1G03210 [Phenazine biosynthesis PhzC/PhzF protein] -0.201 0.025
137 252285_at AT3G49050 [alpha/beta-Hydrolases superfamily protein] -0.201 0.038
138 259385_at AT1G13470 unknown -0.200 0.026
139 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 -0.198 -0.042
140 267160_at AT2G37670 [Transducin/WD40 repeat-like superfamily protein] -0.196 0.031
141 259353_at AT3G05190 [D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein] -0.194 0.036
142 253805_at AT4G28260 unknown -0.193 -0.007
143 246216_at AT4G36380 ROT3, ROTUNDIFOLIA 3 -0.190 -0.028
144 263912_at AT2G36390 BE3, BRANCHING ENZYME 3, SBE2.1, starch branching enzyme 2.1 -0.190 -0.078
145 257410_at AT1G24340 EMB2421, EMBRYO DEFECTIVE 2421, EMB260, EMBRYO DEFECTIVE 260 -0.187 0.003
146 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 -0.185 -0.038
147 254879_at AT4G11670 unknown -0.184 -0.034
148 261112_at AT1G75420 [UDP-Glycosyltransferase superfamily protein] -0.184 -0.091
149 266089_at AT2G38010 [Neutral/alkaline non-lysosomal ceramidase] -0.184 -0.006
150 249871_at AT5G23110 [Zinc finger, C3HC4 type (RING finger) family protein] -0.183 -0.053
151 265467_at AT2G37050 [Leucine-rich repeat protein kinase family protein] -0.181 0.016
152 246651_at AT5G35170 [adenylate kinase family protein] -0.178 -0.067
153 250389_at AT5G11320 AtYUC4, YUC4, YUCCA4 -0.176 0.069
154 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] -0.175 0.119
155 248213_at AT5G53660 AtGRF7, growth-regulating factor 7, GRF7, growth-regulating factor 7 -0.174 -0.038
156 264637_at AT1G65560 [Zinc-binding dehydrogenase family protein] -0.174 0.012
157 261294_at AT1G48430 [Dihydroxyacetone kinase] -0.173 -0.032
158 246925_at AT5G25180 CYP71B14, cytochrome P450, family 71, subfamily B, polypeptide 14 -0.173 0.001
159 265713_at AT2G03530 ATUPS2, ARABIDOPSIS THALIANA UREIDE PERMEASE 2, UPS2, ureide permease 2 -0.172 -0.128
160 259540_at AT1G20640 NLP4, NIN-like protein 4 -0.171 0.026
161 247383_at AT5G63410 [Leucine-rich repeat protein kinase family protein] -0.171 -0.009
162 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 -0.171 -0.107
163 263067_at AT2G17550 TRM26, TON1 Recruiting Motif 26 -0.171 -0.095
164 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.170 0.025
165 254140_at AT4G24610 unknown -0.170 0.130
166 259863_at AT1G72630 ELF4-L2, ELF4-like 2 -0.168 -0.005
167 267389_at AT2G44460 BGLU28, beta glucosidase 28 -0.168 -0.018
168 245903_at AT5G11100 ATSYTD, NTMC2T2.2, NTMC2TYPE2.2, SYT4, synaptotagmin 4, SYTD -0.168 0.079
169 261873_at AT1G11350 CBRLK1, CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, RKS2, SD1-13, S-domain-1 13 -0.167 0.054
170 246426_at AT5G17430 BBM, BABY BOOM -0.167 -0.106
171 258777_at AT3G11850 unknown -0.165 0.081
172 263961_at AT2G36370 [ubiquitin-protein ligases] -0.164 -0.053
173 262090_at AT1G55970 HAC04, HAC4, histone acetyltransferase of the CBP family 4, HAC6, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 6, HAG04, HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 04, HAG4, HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 4 -0.162 0.100
174 247897_at AT5G57810 TET15, tetraspanin15 -0.161 0.106
175 262344_at AT1G64060 ATRBOH F, respiratory burst oxidase protein F, ATRBOHF, ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, RBOH F, respiratory burst oxidase protein F, RBOHAP108, RBOHF, RESPIRATORY BURST OXIDASE PROTEIN F -0.161 -0.090
176 255768_at AT1G16705 [p300/CBP acetyltransferase-related protein-related] -0.160 0.015
177 264078_at AT2G28470 BGAL8, beta-galactosidase 8 -0.160 0.001
178 266050_at AT2G40770 [zinc ion binding] -0.159 -0.094
179 250084_at AT5G17240 SDG40, SET domain group 40 -0.158 0.005