4.0:Information of module
ABA JA 24h
In comparison with aerial organ callus inducing medium 12 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044712 single-organism catabolic process BP 1.601e-09
GO:0019752 carboxylic acid metabolic process BP 8.674e-07
GO:0006082 organic acid metabolic process BP 9.035e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1903047 mitotic cell cycle process BP 5.289e-32
GO:0000278 mitotic cell cycle BP 1.401e-29
GO:0006259 DNA metabolic process BP 7.239e-28
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ABA JA 24h		 Log2 signal ratio
aerial organ callus inducing medium 12 h
1 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 1.719 0.684
2 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 1.573 1.021
3 259384_at AT3G16450 JAL33, Jacalin-related lectin 33 1.514 -0.065
4 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 1.309 0.174
5 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 1.291 0.330
6 250793_at AT5G05600 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 1.254 0.660
7 245148_at AT2G45220 PME17, pectin methylesterase 17 1.166 0.106
8 245885_at AT5G09440 EXL4, EXORDIUM like 4 1.142 0.172
9 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 1.133 0.196
10 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 1.085 0.063
11 246215_at AT4G37180 [Homeodomain-like superfamily protein] 1.069 -0.024
12 267612_at AT2G26690 AtNPF6.2, NPF6.2, NRT1/ PTR family 6.2 1.065 -0.017
13 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 1.049 0.145
14 246963_at AT5G24820 [Eukaryotic aspartyl protease family protein] 1.042 0.030
15 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 1.037 0.379
16 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 1.007 0.240
17 260546_at AT2G43520 ATTI2, trypsin inhibitor protein 2, TI2, trypsin inhibitor protein 2 0.990 -0.004
18 266330_at AT2G01530 MLP329, MLP-like protein 329, ZCE2, (Zusammen-CA)-enhanced 2 0.983 0.108
19 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.946 0.615
20 245244_at AT1G44350 ILL6, IAA-leucine resistant (ILR)-like gene 6 0.939 0.075
21 264887_at AT1G23120 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.932 0.112
22 247266_at AT5G64570 ATBXL4, ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, XYL4, beta-D-xylosidase 4 0.927 -0.109
23 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.888 0.487
24 252698_at AT3G43670 [Copper amine oxidase family protein] 0.839 0.043
25 252137_at AT3G50980 XERO1, dehydrin xero 1 0.838 0.079
26 256725_at AT2G34070 TBL37, TRICHOME BIREFRINGENCE-LIKE 37 0.837 0.009
27 246984_at AT5G67310 CYP81G1, cytochrome P450, family 81, subfamily G, polypeptide 1 0.802 0.160
28 263482_at AT2G03980 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.786 -0.003
29 264415_at AT1G43160 RAP2.6, related to AP2 6 0.767 0.957
30 266269_at AT2G29480 ATGSTU2, glutathione S-transferase tau 2, GST20, GLUTATHIONE S-TRANSFERASE 20, GSTU2, glutathione S-transferase tau 2 0.751 0.264
31 261285_at AT1G35720 ANN1, annexin 1, ANNAT1, annexin 1, AtANN1, ATOXY5, OXY5 0.739 0.040
32 256324_at AT1G66760 [MATE efflux family protein] 0.737 -0.189
33 258362_at AT3G14280 unknown 0.733 -0.024
34 251996_at AT3G52840 BGAL2, beta-galactosidase 2 0.699 -0.188
35 253629_at AT4G30450 [glycine-rich protein] 0.680 -0.143
36 253373_at AT4G33150 LKR, LKR/SDH, LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE, SDH, SACCHAROPINE DEHYDROGENASE 0.675 0.218
37 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A 0.672 -0.268
38 251743_at AT3G55890 [Yippee family putative zinc-binding protein] 0.629 0.011
39 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.629 0.451
40 251235_at AT3G62860 [alpha/beta-Hydrolases superfamily protein] 0.626 0.131
41 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] 0.568 0.008
42 247193_at AT5G65380 [MATE efflux family protein] 0.565 -0.087
43 262096_at AT1G56010 anac021, Arabidopsis NAC domain containing protein 21, ANAC022, Arabidopsis NAC domain containing protein 22, NAC1, NAC domain containing protein 1 0.560 0.085
44 255016_at AT4G10120 ATSPS4F 0.556 -0.367
45 253534_at AT4G31500 ATR4, ALTERED TRYPTOPHAN REGULATION 4, CYP83B1, cytochrome P450, family 83, subfamily B, polypeptide 1, RED1, RED ELONGATED 1, RNT1, RUNT 1, SUR2, SUPERROOT 2 0.550 0.093
46 250483_at AT5G10300 AtHNL, ATMES5, ARABIDOPSIS THALIANA METHYL ESTERASE 5, HNL, HYDROXYNITRILE LYASE, MES5, methyl esterase 5 0.524 0.095
47 252915_at AT4G38810 [Calcium-binding EF-hand family protein] 0.515 -0.085
48 251427_at AT3G60130 BGLU16, beta glucosidase 16 0.506 0.060
49 247356_at AT5G63800 BGAL6, beta-galactosidase 6, MUM2, MUCILAGE-MODIFIED 2 0.498 0.050
50 262607_at AT1G13990 unknown 0.478 0.399
51 260943_at AT1G45145 ATH5, THIOREDOXIN H-TYPE 5, ATTRX5, thioredoxin H-type 5, LIV1, LOCUS OF INSENSITIVITY TO VICTORIN 1, TRX-h5, THIOREDOXIN H-TYPE 5, TRX5, thioredoxin H-type 5 0.469 0.129
52 256061_at AT1G07040 unknown 0.468 0.281
53 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B 0.466 0.265
54 252993_at AT4G38540 [FAD/NAD(P)-binding oxidoreductase family protein] 0.462 0.376
55 250937_at AT5G03230 unknown 0.441 -0.033
56 254573_at AT4G19420 [Pectinacetylesterase family protein] 0.436 -0.042
57 265345_at AT2G22680 WAVH1, WAV3 homolog 1 0.435 0.162
58 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] 0.430 0.166
59 260986_at AT1G53580 ETHE1, ETHE1-LIKE, GLX2-3, GLYOXALASE 2-3, GLY3, glyoxalase II 3 0.426 0.093
60 255463_at AT4G02960 ATRE2, retro element 2, RE2, retro element 2 0.419 -0.016
61 246620_at AT5G36220 CYP81D1, cytochrome P450, family 81, subfamily D, polypeptide 1, CYP91A1, CYTOCHROME P450 91A1 0.418 0.234
62 258727_at AT3G11930 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.418 0.016
63 259154_at AT3G10260 [Reticulon family protein] 0.402 0.069
64 252097_at AT3G51090 unknown 0.398 0.001
65 247601_at AT5G60850 OBP4, OBF binding protein 4 0.398 -0.025
66 248263_at AT5G53370 ATPMEPCRF, PECTIN METHYLESTERASE PCR FRAGMENT F, PMEPCRF, pectin methylesterase PCR fragment F 0.386 -0.211
67 246510_at AT5G15410 ATCNGC2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, CNGC2, CYCLIC NUCLEOTIDE GATED CHANNEL 2, DND1, DEFENSE NO DEATH 1 0.384 -0.059
68 266479_at AT2G31160 LSH3, LIGHT SENSITIVE HYPOCOTYLS 3, OBO1, ORGAN BOUNDARY 1 0.380 -0.224
69 251227_at AT3G62700 ABCC14, ATP-binding cassette C14, ATMRP10, multidrug resistance-associated protein 10, MRP10, multidrug resistance-associated protein 10 0.370 -0.032
70 258195_at AT3G13890 ATMYB26, myb domain protein 26, MS35, MALE STERILE 35, MYB26, myb domain protein 26 0.369 0.009
71 267035_at AT2G38400 AGT3, alanine:glyoxylate aminotransferase 3 0.369 0.102
72 249068_at AT5G43980 PDLP1, plasmodesmata-located protein 1, PDLP1A, PLASMODESMATA-LOCATED PROTEIN 1A 0.355 0.214
73 265277_at AT2G28410 unknown 0.338 -0.104
74 263015_at AT1G23440 [Peptidase C15, pyroglutamyl peptidase I-like] 0.336 0.191
75 267300_at AT2G30140 UGT87A2, UDP-glucosyl transferase 87A2 0.335 0.268
76 264611_at AT1G04680 [Pectin lyase-like superfamily protein] -0.994 0.042
77 252691_at AT3G44050 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.963 -0.106
78 248963_at AT5G45700 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.937 -0.242
79 262081_at AT1G59540 ZCF125 -0.892 0.019
80 261460_at AT1G07880 ATMPK13 -0.875 -0.194
81 261198_at AT1G12940 ATNRT2.5, nitrate transporter2.5, NRT2.5, nitrate transporter2.5 -0.872 0.031
82 253815_at AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 -0.868 -0.187
83 258464_at AT3G17360 POK1, phragmoplast orienting kinesin 1 -0.832 -0.169
84 252763_at AT3G42725 [Putative membrane lipoprotein] -0.827 0.031
85 255265_at AT4G05190 ATK5, kinesin 5 -0.821 -0.303
86 248413_at AT5G51600 ATMAP65-3, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, MAP65-3, MICROTUBULE-ASSOCIATED PROTEIN 65-3, PLE, PLEIADE -0.788 -0.200
87 262494_at AT1G21810 unknown -0.786 -0.166
88 259851_at AT1G72250 [Di-glucose binding protein with Kinesin motor domain] -0.768 -0.336
89 257115_at AT3G20150 [Kinesin motor family protein] -0.766 -0.299
90 259151_at AT3G10310 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] -0.765 -0.090
91 259930_at AT1G34355 ATPS1, PARALLEL SPINDLE 1, PS1, PARALLEL SPINDLE 1 -0.748 -0.058
92 261780_at AT1G76310 CYCB2;4, CYCLIN B2;4 -0.748 -0.255
93 248055_at AT5G55830 LecRK-S.7, L-type lectin receptor kinase S.7 -0.745 -0.233
94 249644_at AT5G37010 unknown -0.733 -0.164
95 253978_at AT4G26660 unknown -0.732 -0.228
96 247962_at AT5G56580 ANQ1, ARABIDOPSIS NQK1, ATMKK6, ARABIDOPSIS THALIANA MAP KINASE KINASE 6, MKK6, MAP kinase kinase 6 -0.703 -0.289
97 267636_at AT2G42110 unknown -0.688 -0.256
98 254379_at AT4G21820 [binding] -0.683 -0.190
99 248476_at AT5G50890 [alpha/beta-Hydrolases superfamily protein] -0.683 -0.047
100 256864_at AT3G23890 ATTOPII, TOPII, topoisomerase II -0.678 -0.260
101 261840_at AT1G16070 AtTLP8, tubby like protein 8, TLP8, tubby like protein 8 -0.672 -0.210
102 265085_at AT1G03780 AtTPX2, TPX2, targeting protein for XKLP2 -0.663 -0.278
103 257978_at AT3G20860 ATNEK5, NIMA-related kinase 5, NEK5, NIMA-related kinase 5 -0.655 -0.110
104 253148_at AT4G35620 CYCB2;2, Cyclin B2;2 -0.647 -0.261
105 265349_at AT2G22610 [Di-glucose binding protein with Kinesin motor domain] -0.645 -0.287
106 248691_at AT5G48310 unknown -0.624 -0.282
107 253757_at AT4G28950 ARAC7, Arabidopsis RAC-like 7, ATRAC7, ATROP9, RAC7, ROP9, RHO-related protein from plants 9 -0.613 -0.119
108 251832_at AT3G55150 ATEXO70H1, exocyst subunit exo70 family protein H1, EXO70H1, exocyst subunit exo70 family protein H1 -0.605 0.013
109 248938_at AT5G45780 [Leucine-rich repeat protein kinase family protein] -0.605 -0.006
110 248658_at AT5G48600 ATCAP-C, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, ATSMC3, structural maintenance of chromosome 3, ATSMC4, ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, SMC3, structural maintenance of chromosome 3 -0.593 -0.167
111 251388_at AT3G60840 MAP65-4, microtubule-associated protein 65-4 -0.591 -0.196
112 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 -0.586 -0.265
113 262036_at AT1G35530 At-FANCM, FANCM, Fanconi anemia complementation group M -0.585 0.043
114 245739_at AT1G44110 CYCA1;1, Cyclin A1;1 -0.578 -0.193
115 258376_at AT3G17680 [Kinase interacting (KIP1-like) family protein] -0.576 -0.195
116 248074_at AT5G55730 FLA1, FASCICLIN-like arabinogalactan 1 -0.576 0.013
117 262752_at AT1G16330 CYCB3;1, cyclin b3;1 -0.574 -0.159
118 252089_at AT3G52110 unknown -0.571 -0.314
119 264377_at AT2G25060 AtENODL14, ENODL14, early nodulin-like protein 14 -0.571 -0.159
120 246920_at AT5G25090 AtENODL13, ENODL13, early nodulin-like protein 13 -0.545 -0.280
121 246802_at AT5G27000 ATK4, kinesin 4, KATD, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D -0.545 0.210
122 254118_at AT4G24790 [AAA-type ATPase family protein] -0.543 -0.305
123 252149_at AT3G51290 APSR1, Altered Phosphate Starvation Response 1 -0.541 -0.013
124 250601_at AT5G07810 [SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein] -0.536 -0.107
125 250504_at AT5G09840 [Putative endonuclease or glycosyl hydrolase] -0.532 0.404
126 258471_at AT3G06030 ANP3, NPK1-related protein kinase 3, AtANP3, MAPKKK12, NP3, NPK1-related protein kinase 3 -0.526 -0.175
127 261364_at AT1G53140 DRP5A, Dynamin related protein 5A -0.522 -0.059
128 247134_at AT5G66230 [Chalcone-flavanone isomerase family protein] -0.519 -0.215
129 257524_at AT3G01330 DEL3, DP-E2F-like protein 3, E2FF, E2L2, E2F-LIKE 2 -0.517 -0.045
130 251527_at AT3G58650 TRM7, TON1 Recruiting Motif 7 -0.515 -0.277
131 254808_at AT4G12740 [HhH-GPD base excision DNA repair family protein] -0.514 -0.070
132 266508_at AT2G47920 NET3C, Networked 3C -0.511 -0.181
133 264895_at AT1G23100 [GroES-like family protein] -0.497 0.369
134 258702_at AT3G09730 unknown -0.495 0.074
135 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 -0.482 0.618
136 259448_at AT1G13790 FDM4, factor of DNA methylation 4 -0.477 -0.008
137 246315_at AT3G56870 unknown -0.474 0.009
138 250196_at AT5G14580 [polyribonucleotide nucleotidyltransferase, putative] -0.474 0.398
139 252877_at AT4G39630 unknown -0.468 -0.115
140 263441_at AT2G28620 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.461 -0.162
141 249837_at AT5G23480 [SWIB/MDM2 domain] -0.452 -0.063
142 259978_at AT1G76540 CDKB2;1, cyclin-dependent kinase B2;1 -0.447 -0.197
143 261085_at AT1G17480 IQD7, IQ-domain 7 -0.443 -0.125
144 251035_at AT5G02220 SMR4, SIAMESE-RELATED 4 -0.441 0.087
145 249032_at AT5G44910 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.437 0.584
146 250499_at AT5G09730 ATBX3, ATBXL3, BETA-XYLOSIDASE 3, BX3, BXL3, beta-xylosidase 3, XYL3 -0.435 0.143
147 257005_at AT3G14190 CMR1, COPPER MODIFIED RESISTANCE 1 -0.433 -0.265
148 261384_at AT1G05440 [C-8 sterol isomerases] -0.432 -0.269
149 254443_at AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 -0.415 -0.172