4.0:Information of module
amiRAP hypoxic
In comparison with seedlings by volatiles from leafminer damaged Lima bean 48h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 2.801e-16
GO:0019684 photosynthesis, light reaction BP 2.731e-12
GO:0006091 generation of precursor metabolites and ... BP 1.883e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010583 response to cyclopentenone BP 3.413e-16
GO:0009404 toxin metabolic process BP 2.771e-13
GO:0009407 toxin catabolic process BP 2.895e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
amiRAP hypoxic		 Log2 signal ratio
seedlings by volatiles from leafminer damaged Lima bean 48h
1 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.341 -0.032
2 244973_at ATCG00690 PSBT, photosystem II reaction center protein T, PSBTC 0.327 -0.277
3 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 0.326 -0.305
4 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 0.290 -0.316
5 244933_at ATCG01070 NDHE 0.284 -0.329
6 244965_at ATCG00590 ORF31 0.276 -0.169
7 264261_at AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 0.273 0.276
8 255064_at AT4G08950 EXO, EXORDIUM 0.260 -0.016
9 244970_at ATCG00660 RPL20, ribosomal protein L20 0.260 -0.158
10 265722_at AT2G40100 LHCB4.3, light harvesting complex photosystem II 0.246 0.230
11 244934_at ATCG01080 NDHG 0.230 -0.362
12 256569_at AT3G19550 unknown 0.199 0.066
13 249726_at AT5G35480 unknown 0.198 -0.140
14 245018_at ATCG00520 YCF4 0.184 -0.130
15 259560_at AT1G21270 WAK2, wall-associated kinase 2 0.180 -0.043
16 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 0.178 -0.131
17 265404_at AT2G16730 BGAL13, beta-galactosidase 13 0.178 -0.039
18 255080_at AT4G09030 AGP10, arabinogalactan protein 10, ATAGP10 0.168 -0.010
19 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 0.167 -0.164
20 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 0.165 -0.099
21 261395_at AT1G79700 WRI4, WRINKLED 4 0.163 -0.270
22 250980_at AT5G03130 unknown 0.149 -0.184
23 267076_at AT2G41090 [Calcium-binding EF-hand family protein] 0.148 0.020
24 260070_at AT1G73830 BEE3, BR enhanced expression 3 0.147 0.039
25 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 0.146 -0.178
26 257315_at AT3G30775 AT-POX, ATPDH, ATPOX, ARABIDOPSIS THALIANA PROLINE OXIDASE, ERD5, EARLY RESPONSIVE TO DEHYDRATION 5, PDH1, proline dehydrogenase 1, PRO1, PRODH, PROLINE DEHYDROGENASE 0.146 -0.275
27 262947_at AT1G75750 GASA1, GAST1 protein homolog 1 0.144 -0.110
28 255808_at AT4G10280 [RmlC-like cupins superfamily protein] 0.143 0.016
29 266395_at AT2G43100 ATLEUD1, IPMI2, isopropylmalate isomerase 2 0.143 0.062
30 253617_at AT4G30410 [sequence-specific DNA binding transcription factors] 0.142 -0.148
31 257017_at AT3G19620 [Glycosyl hydrolase family protein] 0.142 0.029
32 258452_at AT3G22370 AOX1A, alternative oxidase 1A, ATAOX1A, AtHSR3, HSR3, hyper-sensitivity-related 3 0.141 0.102
33 249314_at AT5G41180 [leucine-rich repeat transmembrane protein kinase family protein] 0.141 0.008
34 246371_at AT1G51940 LYK3, LysM-containing receptor-like kinase 3 0.136 -0.036
35 251906_at AT3G53720 ATCHX20, cation/H+ exchanger 20, CHX20, cation/H+ exchanger 20 0.135 -0.059
36 262179_at AT1G77980 AGL66, AGAMOUS-like 66 0.133 0.050
37 267532_at AT2G42040 unknown 0.129 -0.083
38 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 -0.870 0.267
39 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 -0.647 0.117
40 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.535 -0.013
41 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -0.505 0.360
42 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 -0.503 0.183
43 245148_at AT2G45220 PME17, pectin methylesterase 17 -0.495 0.073
44 261020_at AT1G26390 [FAD-binding Berberine family protein] -0.484 0.125
45 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] -0.468 -0.030
46 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 -0.461 0.211
47 255110_at AT4G08770 Prx37, peroxidase 37 -0.453 0.332
48 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 -0.437 0.165
49 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.410 -0.175
50 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.406 0.005
51 259040_at AT3G09270 ATGSTU8, glutathione S-transferase TAU 8, GSTU8, glutathione S-transferase TAU 8 -0.344 0.195
52 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 -0.331 -0.005
53 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 -0.322 0.208
54 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase -0.318 -0.177
55 260568_at AT2G43570 CHI, chitinase, putative -0.318 0.079
56 256933_at AT3G22600 LTPG5, glycosylphosphatidylinositol-anchored lipid protein transfer 5 -0.318 0.055
57 247224_at AT5G65080 AGL68, AGAMOUS-like 68, MAF5, MADS AFFECTING FLOWERING 5 -0.313 -0.062
58 258957_at AT3G01420 ALPHA-DOX1, alpha-dioxygenase 1, DIOX1, DOX1, PADOX-1, plant alpha dioxygenase 1 -0.305 0.198
59 258203_at AT3G13950 unknown -0.291 0.137
60 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] -0.282 0.226
61 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.272 0.014
62 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 -0.271 0.547
63 253799_at AT4G28140 [Integrase-type DNA-binding superfamily protein] -0.270 0.066
64 267391_at AT2G44480 BGLU17, beta glucosidase 17 -0.265 0.217
65 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 -0.264 0.598
66 261420_at AT1G07720 KCS3, 3-ketoacyl-CoA synthase 3 -0.257 0.008
67 248218_at AT5G53710 unknown -0.255 0.032
68 266292_at AT2G29350 SAG13, senescence-associated gene 13 -0.251 0.311
69 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 -0.244 0.257
70 265418_at AT2G20880 AtERF53, ERF53, ERF domain 53 -0.231 0.044
71 245593_at AT4G14550 IAA14, indole-3-acetic acid inducible 14, SLR, SOLITARY ROOT -0.219 -0.264
72 253962_at AT4G26460 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.218 0.081
73 267168_at AT2G37770 AKR4C9, Aldo-keto reductase family 4 member C9, ChlAKR, Chloroplastic aldo-keto reductase -0.218 0.546