4.0:Information of module
amiRAP hypoxic
In comparison with cat2-2; 8h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 2.801e-16
GO:0019684 photosynthesis, light reaction BP 2.731e-12
GO:0006091 generation of precursor metabolites and ... BP 1.883e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010583 response to cyclopentenone BP 3.413e-16
GO:0009404 toxin metabolic process BP 2.771e-13
GO:0009407 toxin catabolic process BP 2.895e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
amiRAP hypoxic		 Log2 signal ratio
cat2-2; 8h switch to ambient CO2 concentrations;
1 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.341 0.047
2 244973_at ATCG00690 PSBT, photosystem II reaction center protein T, PSBTC 0.327 -0.070
3 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 0.326 -0.012
4 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 0.290 -0.022
5 244933_at ATCG01070 NDHE 0.284 -0.095
6 244965_at ATCG00590 ORF31 0.276 -0.171
7 264261_at AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 0.273 0.067
8 255064_at AT4G08950 EXO, EXORDIUM 0.260 -0.067
9 244970_at ATCG00660 RPL20, ribosomal protein L20 0.260 -0.117
10 265722_at AT2G40100 LHCB4.3, light harvesting complex photosystem II 0.246 -0.029
11 244934_at ATCG01080 NDHG 0.230 -0.113
12 256569_at AT3G19550 unknown 0.199 -0.108
13 249726_at AT5G35480 unknown 0.198 -0.029
14 245018_at ATCG00520 YCF4 0.184 -0.070
15 259560_at AT1G21270 WAK2, wall-associated kinase 2 0.180 0.049
16 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 0.178 0.064
17 265404_at AT2G16730 BGAL13, beta-galactosidase 13 0.178 0.007
18 255080_at AT4G09030 AGP10, arabinogalactan protein 10, ATAGP10 0.168 -0.053
19 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 0.167 -0.072
20 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 0.165 -0.057
21 261395_at AT1G79700 WRI4, WRINKLED 4 0.163 -0.006
22 250980_at AT5G03130 unknown 0.149 -0.185
23 267076_at AT2G41090 [Calcium-binding EF-hand family protein] 0.148 0.014
24 260070_at AT1G73830 BEE3, BR enhanced expression 3 0.147 -0.121
25 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 0.146 -0.176
26 257315_at AT3G30775 AT-POX, ATPDH, ATPOX, ARABIDOPSIS THALIANA PROLINE OXIDASE, ERD5, EARLY RESPONSIVE TO DEHYDRATION 5, PDH1, proline dehydrogenase 1, PRO1, PRODH, PROLINE DEHYDROGENASE 0.146 0.025
27 262947_at AT1G75750 GASA1, GAST1 protein homolog 1 0.144 -0.030
28 255808_at AT4G10280 [RmlC-like cupins superfamily protein] 0.143 -0.081
29 266395_at AT2G43100 ATLEUD1, IPMI2, isopropylmalate isomerase 2 0.143 -0.032
30 253617_at AT4G30410 [sequence-specific DNA binding transcription factors] 0.142 -0.070
31 257017_at AT3G19620 [Glycosyl hydrolase family protein] 0.142 0.039
32 258452_at AT3G22370 AOX1A, alternative oxidase 1A, ATAOX1A, AtHSR3, HSR3, hyper-sensitivity-related 3 0.141 0.141
33 249314_at AT5G41180 [leucine-rich repeat transmembrane protein kinase family protein] 0.141 0.040
34 246371_at AT1G51940 LYK3, LysM-containing receptor-like kinase 3 0.136 -0.007
35 251906_at AT3G53720 ATCHX20, cation/H+ exchanger 20, CHX20, cation/H+ exchanger 20 0.135 0.013
36 262179_at AT1G77980 AGL66, AGAMOUS-like 66 0.133 -0.027
37 267532_at AT2G42040 unknown 0.129 -0.088
38 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 -0.870 0.137
39 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 -0.647 0.046
40 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.535 0.273
41 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -0.505 0.949
42 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 -0.503 0.118
43 245148_at AT2G45220 PME17, pectin methylesterase 17 -0.495 0.298
44 261020_at AT1G26390 [FAD-binding Berberine family protein] -0.484 0.149
45 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] -0.468 -0.014
46 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 -0.461 0.161
47 255110_at AT4G08770 Prx37, peroxidase 37 -0.453 0.324
48 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 -0.437 0.107
49 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.410 -0.001
50 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.406 0.353
51 259040_at AT3G09270 ATGSTU8, glutathione S-transferase TAU 8, GSTU8, glutathione S-transferase TAU 8 -0.344 0.202
52 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 -0.331 0.019
53 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 -0.322 0.053
54 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase -0.318 0.117
55 260568_at AT2G43570 CHI, chitinase, putative -0.318 0.137
56 256933_at AT3G22600 LTPG5, glycosylphosphatidylinositol-anchored lipid protein transfer 5 -0.318 0.191
57 247224_at AT5G65080 AGL68, AGAMOUS-like 68, MAF5, MADS AFFECTING FLOWERING 5 -0.313 -0.048
58 258957_at AT3G01420 ALPHA-DOX1, alpha-dioxygenase 1, DIOX1, DOX1, PADOX-1, plant alpha dioxygenase 1 -0.305 0.044
59 258203_at AT3G13950 unknown -0.291 0.207
60 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] -0.282 0.191
61 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.272 0.357
62 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 -0.271 1.035
63 253799_at AT4G28140 [Integrase-type DNA-binding superfamily protein] -0.270 0.066
64 267391_at AT2G44480 BGLU17, beta glucosidase 17 -0.265 -0.020
65 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 -0.264 0.661
66 261420_at AT1G07720 KCS3, 3-ketoacyl-CoA synthase 3 -0.257 0.008
67 248218_at AT5G53710 unknown -0.255 -0.008
68 266292_at AT2G29350 SAG13, senescence-associated gene 13 -0.251 0.278
69 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 -0.244 0.143
70 265418_at AT2G20880 AtERF53, ERF53, ERF domain 53 -0.231 0.024
71 245593_at AT4G14550 IAA14, indole-3-acetic acid inducible 14, SLR, SOLITARY ROOT -0.219 -0.004
72 253962_at AT4G26460 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.218 -0.058
73 267168_at AT2G37770 AKR4C9, Aldo-keto reductase family 4 member C9, ChlAKR, Chloroplastic aldo-keto reductase -0.218 0.274