4.0:Information of module
amiRAP aerobic
In comparison with Wounding Stress3 h (root) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0016144 S-glycoside biosynthetic process BP 1.041e-06
GO:0019758 glycosinolate biosynthetic process BP 1.041e-06
GO:0019761 glucosinolate biosynthetic process BP 1.041e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 6.055e-24
GO:0010200 response to chitin BP 7.550e-24
GO:0010243 response to organonitrogen compound BP 1.312e-23
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
amiRAP aerobic		 Log2 signal ratio
Wounding Stress3 h (root)
1 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.430 0.197
2 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 0.392 0.216
3 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 0.378 0.244
4 257021_at AT3G19710 BCAT4, branched-chain aminotransferase4 0.352 0.119
5 254862_at AT4G12030 BASS5, BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, BAT5, bile acid transporter 5 0.345 0.169
6 244965_at ATCG00590 ORF31 0.298 0.148
7 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 0.285 0.266
8 266395_at AT2G43100 ATLEUD1, IPMI2, isopropylmalate isomerase 2 0.277 0.083
9 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.208 0.118
10 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 0.202 0.146
11 262646_at AT1G62800 ASP4, aspartate aminotransferase 4 0.194 0.103
12 254687_at AT4G13770 CYP83A1, cytochrome P450, family 83, subfamily A, polypeptide 1, REF2, REDUCED EPIDERMAL FLUORESCENCE 2 0.181 0.088
13 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 0.178 0.130
14 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 0.178 0.102
15 256569_at AT3G19550 unknown 0.177 -0.014
16 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 0.162 0.045
17 258652_at AT3G09910 ATRAB18C, ATRABC2B, RAB GTPase homolog C2B, RABC2b, RAB GTPase homolog C2B 0.161 0.152
18 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 0.156 0.155
19 263909_at AT2G36490 AtROS1, DML1, demeter-like 1, ROS1, REPRESSOR OF SILENCING1 0.146 -0.034
20 252173_at AT3G50650 [GRAS family transcription factor] 0.138 -0.129
21 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] 0.134 0.004
22 244998_at ATCG00180 RPOC1 0.133 -0.055
23 262981_at AT1G75590 SAUR52, SMALL AUXIN UPREGULATED RNA 52 0.129 -0.009
24 259815_at AT1G49870 unknown 0.127 -0.009
25 246580_at AT1G31770 ABCG14, ATP-binding cassette G14 0.125 -0.001
26 262491_at AT1G21650 SECA2 0.123 -0.077
27 259899_at AT1G71210 [Pentatricopeptide repeat (PPR) superfamily protein] 0.121 -0.010
28 253084_at AT4G36260 SRS2, SHI RELATED SEQUENCE 2, STY2, STYLISH 2 0.113 -0.028
29 250993_at AT5G02280 [SNARE-like superfamily protein] 0.112 0.074
30 258323_at AT3G22750 [Protein kinase superfamily protein] 0.110 0.000
31 264395_at AT1G12070 [Immunoglobulin E-set superfamily protein] 0.110 0.048
32 251668_at AT3G57010 [Calcium-dependent phosphotriesterase superfamily protein] 0.108 0.007
33 258292_at AT3G23330 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.106 0.011
34 263738_at AT1G60060 [Serine/threonine-protein kinase WNK (With No Lysine)-related] 0.101 -0.012
35 246344_at AT3G56730 [Putative endonuclease or glycosyl hydrolase] 0.100 0.130
36 247189_at AT5G65390 AGP7, arabinogalactan protein 7 0.097 0.007
37 247381_at AT5G63390 [O-fucosyltransferase family protein] 0.097 -0.022
38 254207_at AT4G24060 [Dof-type zinc finger DNA-binding family protein] 0.095 0.058
39 261653_at AT1G01900 ATSBT1.1, SBTI1.1 0.093 0.013
40 249821_at AT5G23690 [Polynucleotide adenylyltransferase family protein] 0.092 -0.008
41 264324_at AT1G04160 ATXIB, ARABIDOPSIS THALIANA MYOSIN XI B, XI-8, MYOSIN XI-8, XI-B, MYOSIN XI B, XIB, myosin XI B 0.092 0.059
42 247503_at AT5G61980 AGD1, ARF-GAP domain 1 0.091 -0.029
43 253828_at AT4G27970 SLAH2, SLAC1 homologue 2 0.088 0.002
44 244967_at ATCG00630 PSAJ 0.088 0.033
45 263346_at AT2G05660 [CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 0.088 0.024
46 260423_at AT1G72470 ATEXO70D1, exocyst subunit exo70 family protein D1, EXO70D1, exocyst subunit exo70 family protein D1 0.087 -0.016
47 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 0.083 0.055
48 260455_at AT1G72500 [LOCATED IN: plasma membrane] 0.083 0.041
49 261775_at AT1G76280 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.082 -0.036
50 248016_at AT5G56380 [F-box/RNI-like/FBD-like domains-containing protein] 0.082 0.012
51 260053_at AT1G78120 TPR12, tetratricopeptide repeat 12 0.082 -0.061
52 246025_at AT5G21150 AGO9, ARGONAUTE 9 0.082 -0.050
53 256248_at AT3G66652 [fip1 motif-containing protein] 0.080 0.051
54 260038_at AT1G68875 unknown 0.080 0.023
55 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.079 0.001
56 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 -0.528 -0.046
57 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 -0.482 -0.099
58 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.446 -0.166
59 266010_at AT2G37430 ZAT11, zinc finger of Arabidopsis thaliana 11 -0.430 0.096
60 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.422 0.093
61 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase -0.298 -0.245
62 253044_at AT4G37290 unknown -0.290 -0.078
63 257061_at AT3G18250 [Putative membrane lipoprotein] -0.272 -0.082
64 261005_at AT1G26420 [FAD-binding Berberine family protein] -0.247 -0.177
65 247224_at AT5G65080 AGL68, AGAMOUS-like 68, MAF5, MADS AFFECTING FLOWERING 5 -0.241 -0.054
66 258606_at AT3G02840 [ARM repeat superfamily protein] -0.239 -0.149
67 260804_at AT1G78410 [VQ motif-containing protein] -0.238 -0.014
68 256933_at AT3G22600 LTPG5, glycosylphosphatidylinositol-anchored lipid protein transfer 5 -0.233 0.044
69 261474_at AT1G14540 PER4, peroxidase 4 -0.231 -0.071
70 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 -0.216 0.025
71 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 -0.216 0.203
72 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 -0.208 0.067
73 253454_at AT4G31875 unknown -0.207 0.118
74 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] -0.196 -0.090
75 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] -0.193 -0.230
76 254524_at AT4G20000 [VQ motif-containing protein] -0.193 0.046
77 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 -0.192 -0.421
78 254074_at AT4G25490 ATCBF1, CBF1, C-repeat/DRE binding factor 1, DREB1B, DRE BINDING PROTEIN 1B -0.179 -0.049
79 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 -0.173 -0.147
80 258366_at AT3G14230 RAP2.2, related to AP2 2 -0.171 -0.031
81 257536_at AT3G02800 AtPFA-DSP3, PFA-DSP3, plant and fungi atypical dual-specificity phosphatase 3 -0.169 -0.091
82 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 -0.168 0.018
83 263182_at AT1G05575 unknown -0.165 0.050
84 256185_at AT1G51700 ADOF1, DOF zinc finger protein 1, DOF1, DOF zinc finger protein 1 -0.163 0.054
85 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 -0.160 -0.018
86 261020_at AT1G26390 [FAD-binding Berberine family protein] -0.160 -0.145
87 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.158 0.060
88 254592_at AT4G18880 AT-HSFA4A, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, HSF A4A, heat shock transcription factor A4A -0.156 -0.080
89 266292_at AT2G29350 SAG13, senescence-associated gene 13 -0.154 -0.130
90 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] -0.152 -0.012
91 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.151 -0.028
92 263730_at AT1G60090 BGLU4, beta glucosidase 4 -0.150 -0.037
93 247455_at AT5G62470 ATMYB96, MYB DOMAIN PROTEIN 96, MYB96, myb domain protein 96, MYBCOV1 -0.149 0.041
94 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 -0.146 0.051
95 260460_at AT1G68230 [Reticulon family protein] -0.146 -0.022
96 253679_at AT4G29610 [Cytidine/deoxycytidylate deaminase family protein] -0.144 -0.110
97 253884_at AT4G27670 HSP21, heat shock protein 21 -0.143 -0.384
98 253281_at AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 -0.143 -0.080
99 262870_at AT1G64710 [GroES-like zinc-binding dehydrogenase family protein] -0.139 -0.041
100 245026_at ATCG00140 ATPH -0.139 -0.109
101 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 -0.136 0.043
102 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 -0.136 0.004
103 246993_at AT5G67450 AZF1, zinc-finger protein 1, ZF1, zinc-finger protein 1 -0.136 -0.021
104 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 -0.135 0.022
105 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 -0.135 -0.135
106 252136_at AT3G50770 CML41, calmodulin-like 41 -0.133 -0.090
107 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 -0.131 -0.009
108 263650_at AT1G04360 [RING/U-box superfamily protein] -0.131 0.057
109 246370_at AT1G51920 unknown -0.131 -0.022