4.0:Information of module
GA
In comparison with Red/FR Light45min help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 3.977e-19
GO:0010200 response to chitin BP 2.875e-18
GO:0010243 response to organonitrogen compound BP 5.801e-18
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0008652 cellular amino acid biosynthetic process BP 2.573e-03
GO:0042440 pigment metabolic process BP 5.524e-03
GO:0009086 methionine biosynthetic process BP 5.862e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
GA		 Log2 signal ratio
Red/FR Light45min
1 261984_at AT1G33760 [Integrase-type DNA-binding superfamily protein] 0.738 -0.014
2 258606_at AT3G02840 [ARM repeat superfamily protein] 0.587 -0.022
3 249940_at AT5G22380 anac090, NAC domain containing protein 90, NAC090, NAC domain containing protein 90 0.584 0.052
4 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] 0.537 -0.026
5 249197_at AT5G42380 CML37, calmodulin like 37 0.533 -0.023
6 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.494 0.093
7 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.395 -0.013
8 246993_at AT5G67450 AZF1, zinc-finger protein 1, ZF1, zinc-finger protein 1 0.378 -0.037
9 252681_at AT3G44350 anac061, NAC domain containing protein 61, NAC061, NAC domain containing protein 61 0.374 -0.002
10 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.369 -0.181
11 248236_at AT5G53870 AtENODL1, ENODL1, early nodulin-like protein 1 0.317 0.042
12 247240_at AT5G64660 ATCMPG2, CMPG2, CYS, MET, PRO, and GLY protein 2 0.303 -0.002
13 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 0.291 -0.028
14 260568_at AT2G43570 CHI, chitinase, putative 0.264 -0.071
15 249454_at AT5G39520 unknown 0.261 -0.012
16 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 0.257 0.036
17 266464_at AT2G47800 ABCC4, ATP-binding cassette C4, ATMRP4, multidrug resistance-associated protein 4, EST3, MRP4, multidrug resistance-associated protein 4 0.257 0.001
18 258682_at AT3G08720 ATPK19, Arabidopsis thaliana protein kinase 19, ATPK2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, ATS6K2, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, S6K2, serine/threonine protein kinase 2 0.242 0.030
19 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.239 -0.015
20 252045_at AT3G52450 AtPUB22, PUB22, plant U-box 22 0.233 -0.029
21 260296_at AT1G63750 [Disease resistance protein (TIR-NBS-LRR class) family] 0.227 -0.045
22 259410_at AT1G13340 [Regulator of Vps4 activity in the MVB pathway protein] 0.224 0.011
23 249746_at AT5G24590 ANAC091, Arabidopsis NAC domain containing protein 91, TIP, TCV-interacting protein 0.218 -0.027
24 263379_at AT2G40140 ATSZF2, CZF1, SZF2, (SALT-INDUCIBLE ZINC FINGER 2, ZFAR1 0.216 -0.020
25 253638_at AT4G30470 [NAD(P)-binding Rossmann-fold superfamily protein] 0.208 0.012
26 258764_at AT3G10720 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.200 0.010
27 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 0.195 -0.054
28 266799_at AT2G22860 ATPSK2, phytosulfokine 2 precursor, PSK2, phytosulfokine 2 precursor 0.188 0.029
29 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 0.181 -0.024
30 261476_at AT1G14480 [Ankyrin repeat family protein] 0.175 -0.001
31 247553_at AT5G60910 AGL8, AGAMOUS-like 8, FUL, FRUITFULL 0.174 -0.036
32 249626_at AT5G37540 [Eukaryotic aspartyl protease family protein] 0.172 0.050
33 248821_at AT5G47070 [Protein kinase superfamily protein] 0.165 0.016
34 259251_at AT3G07600 [Heavy metal transport/detoxification superfamily protein ] 0.163 -0.040
35 267381_at AT2G26190 [calmodulin-binding family protein] 0.161 -0.009
36 256366_at AT1G66880 [Protein kinase superfamily protein] 0.158 0.003
37 256275_at AT3G12110 ACT11, actin-11 0.155 -0.012
38 255595_at AT4G01700 [Chitinase family protein] 0.144 0.003
39 250829_at AT5G04720 ADR1-L2, ADR1-like 2, PHX21, PHOENIX 21 0.144 0.004
40 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] 0.144 -0.016
41 247884_at AT5G57800 CER3, ECERIFERUM 3, FLP1, FACELESS POLLEN 1, WAX2, YRE 0.141 0.000
42 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.136 0.310
43 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 0.134 0.002
44 258805_at AT3G04010 [O-Glycosyl hydrolases family 17 protein] 0.131 -0.021
45 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 0.131 -0.165
46 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 0.128 -0.032
47 252629_at AT3G44970 [Cytochrome P450 superfamily protein] -0.315 -0.022
48 266988_at AT2G39310 JAL22, jacalin-related lectin 22 -0.231 0.003
49 259373_at AT1G69160 unknown -0.193 -0.060
50 256577_at AT3G28220 [TRAF-like family protein] -0.167 0.052
51 246278_at AT4G37190 [LOCATED IN: cytosol, plasma membrane] -0.159 0.006
52 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 -0.155 0.010
53 246860_at AT5G25840 unknown -0.155 -0.008
54 261048_at AT1G01420 UGT72B3, UDP-glucosyl transferase 72B3 -0.154 0.003
55 266695_at AT2G19810 AtOZF1, AtTZF2, OZF1, Oxidation-related Zinc Finger 1, TZF2, tandem zinc finger 2 -0.151 -0.008
56 262891_at AT1G79460 ATKS, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, ATKS1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, GA2, GA REQUIRING 2, KS, KS1, ENT-KAURENE SYNTHASE 1 -0.144 -0.026
57 250106_at AT5G16640 [Pentatricopeptide repeat (PPR) superfamily protein] -0.136 0.013
58 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 -0.135 0.038
59 262719_at AT1G43590 unknown -0.133 0.013
60 263325_at AT2G04240 XERICO -0.132 0.007
61 251586_at AT3G58070 GIS, GLABROUS INFLORESCENCE STEMS -0.130 0.001
62 255138_at AT4G08380 [Proline-rich extensin-like family protein] -0.125 -0.030
63 257886_at AT3G17060 [Pectin lyase-like superfamily protein] -0.122 0.027
64 245892_at AT5G09370 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.117 -0.015
65 248784_at AT5G47380 unknown -0.117 -0.019
66 255285_at AT4G04630 unknown -0.116 -0.046
67 253836_at AT4G27840 [SNARE-like superfamily protein] -0.115 -0.003
68 260277_at AT1G80520 [Sterile alpha motif (SAM) domain-containing protein] -0.112 -0.053
69 245353_at AT4G16000 unknown -0.111 -0.008
70 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 -0.110 0.006
71 258204_at AT3G13960 AtGRF5, growth-regulating factor 5, GRF5, growth-regulating factor 5 -0.108 -0.053
72 244962_at ATCG01050 NDHD -0.107 -0.003
73 259163_at AT3G01490 [Protein kinase superfamily protein] -0.106 -0.013
74 262751_at AT1G16310 [Cation efflux family protein] -0.105 -0.011
75 262096_at AT1G56010 anac021, Arabidopsis NAC domain containing protein 21, ANAC022, Arabidopsis NAC domain containing protein 22, NAC1, NAC domain containing protein 1 -0.105 0.008
76 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.105 0.014
77 253155_at AT4G35720 unknown -0.103 -0.058
78 259227_at AT3G07750 [3'-5'-exoribonuclease family protein] -0.103 0.016
79 248154_at AT5G54400 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.100 0.031
80 251443_at AT3G59940 KFB50, Kelch repeat F-box 50, KMD4, KISS ME DEADLY 4 -0.100 0.014
81 263151_at AT1G54120 unknown -0.100 0.019
82 245661_at AT1G28220 ATPUP3, purine permease 3, PUP3, purine permease 3 -0.099 -0.006
83 256528_at AT1G66140 ZFP4, zinc finger protein 4 -0.099 -0.014
84 251224_at AT3G62620 [sucrose-phosphatase-related] -0.098 -0.043
85 249708_at AT5G35660 [Glycine-rich protein family] -0.098 0.050
86 267505_at AT2G45560 CYP76C1, cytochrome P450, family 76, subfamily C, polypeptide 1 -0.097 -0.018
87 257460_at AT1G75580 SAUR51, SMALL AUXIN UPREGULATED RNA 51 -0.095 -0.009
88 267077_at AT2G40970 MYBC1 -0.095 0.001
89 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.094 -0.006
90 254293_at AT4G23060 IQD22, IQ-domain 22 -0.092 -0.014
91 252911_at AT4G39510 CYP96A12, cytochrome P450, family 96, subfamily A, polypeptide 12 -0.092 -0.038