4.0:Information of module
Aerobic prt6
In comparison with aerial organ callus inducing medium 24h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0036293 response to decreased oxygen levels BP 5.414e-10
GO:0070482 response to oxygen levels BP 7.127e-10
GO:0001666 response to hypoxia BP 1.820e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009069 serine family amino acid metabolic proce... BP 5.726e-06
GO:0052543 callose deposition in cell wall BP 8.057e-06
GO:0009070 serine family amino acid biosynthetic pr... BP 8.588e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Aerobic prt6		 Log2 signal ratio
aerial organ callus inducing medium 24h
1 245226_at AT3G29970 [B12D protein] 1.362 0.001
2 252882_at AT4G39675 unknown 1.248 0.189
3 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 1.050 0.006
4 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.919 -0.077
5 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.872 -0.022
6 259879_at AT1G76650 CML38, calmodulin-like 38 0.763 0.036
7 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.672 0.233
8 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.665 0.202
9 261567_at AT1G33055 unknown 0.648 0.065
10 247024_at AT5G66985 unknown 0.637 0.013
11 250152_at AT5G15120 unknown 0.625 0.158
12 254200_at AT4G24110 unknown 0.618 0.178
13 246001_at AT5G20790 unknown 0.608 -0.173
14 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.593 0.083
15 249384_at AT5G39890 unknown 0.588 0.066
16 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] 0.578 0.054
17 253298_at AT4G33560 [Wound-responsive family protein] 0.575 0.171
18 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.559 0.026
19 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.537 0.225
20 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 0.529 -0.004
21 255807_at AT4G10270 [Wound-responsive family protein] 0.509 -0.047
22 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.497 0.084
23 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 0.474 0.276
24 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.466 0.223
25 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 0.465 -0.068
26 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.463 0.254
27 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.458 -0.034
28 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 0.452 0.100
29 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] 0.446 0.181
30 250472_at AT5G10210 unknown 0.445 -0.244
31 245076_at AT2G23170 GH3.3 0.429 0.805
32 245171_at AT2G47560 [RING/U-box superfamily protein] 0.393 -0.024
33 266974_at AT2G39370 MAKR4, MEMBRANE-ASSOCIATED KINASE REGULATOR 4 0.378 1.017
34 254644_at AT4G18510 CLE2, CLAVATA3/ESR-related 2 0.363 0.025
35 257197_at AT3G23800 SBP3, selenium-binding protein 3 0.344 0.454
36 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 0.327 0.021
37 252834_at AT4G40070 [RING/U-box superfamily protein] 0.321 0.156
38 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 0.314 0.018
39 249346_at AT5G40780 LHT1, lysine histidine transporter 1 0.300 0.675
40 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.300 0.039
41 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 0.293 0.525
42 254197_at AT4G24040 ATTRE1, TRE1, trehalase 1 0.283 0.343
43 267230_at AT2G44080 ARL, ARGOS-like 0.278 0.275
44 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] 0.272 0.024
45 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 0.264 -0.156
46 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.775 -0.333
47 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -0.673 -0.187
48 250824_at AT5G05200 [Protein kinase superfamily protein] -0.561 -0.148
49 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.558 -0.199
50 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.538 -0.310
51 256878_at AT3G26460 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.439 -0.107
52 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] -0.417 -0.186
53 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.393 0.304
54 259185_at AT3G01550 ATPPT2, PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2, PPT2, phosphoenolpyruvate (pep)/phosphate translocator 2 -0.359 -0.857
55 251838_at AT3G54940 [Papain family cysteine protease] -0.344 -0.244
56 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.300 -0.005
57 253805_at AT4G28260 unknown -0.274 -0.020
58 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] -0.268 -0.004
59 253815_at AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 -0.268 -0.209
60 260012_at AT1G67865 unknown -0.265 -0.190
61 250624_at AT5G07330 unknown -0.255 -0.010
62 259615_at AT1G47980 unknown -0.254 -0.065
63 265454_at AT2G46530 ARF11, auxin response factor 11 -0.210 0.048
64 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 -0.203 0.060
65 248839_at AT5G46690 bHLH071, beta HLH protein 71 -0.199 -0.450
66 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 -0.194 -0.262
67 259574_at AT1G35310 MLP168, MLP-like protein 168 -0.193 -0.081
68 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 -0.191 0.519
69 249772_at AT5G24130 unknown -0.165 -0.096
70 259705_at AT1G77450 anac032, NAC domain containing protein 32, NAC032, NAC domain containing protein 32 -0.159 0.052
71 266656_at AT2G25900 ATCTH, ATTZF1, A. THALIANA TANDEM ZINC FINGER PROTEIN 1 -0.157 -0.169
72 257994_at AT3G19920 unknown -0.157 0.060
73 250674_at AT5G07130 LAC13, laccase 13 -0.157 0.006
74 256096_at AT1G13650 unknown -0.152 -0.928
75 250180_at AT5G14450 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.151 0.022
76 247734_at AT5G59400 unknown -0.146 -0.144
77 259912_at AT1G72670 iqd8, IQ-domain 8 -0.144 -0.273
78 265464_at AT2G37080 RIP2, ROP interactive partner 2 -0.142 -0.364
79 261248_at AT1G20030 [Pathogenesis-related thaumatin superfamily protein] -0.140 -0.062
80 259548_at AT1G35260 MLP165, MLP-like protein 165 -0.136 0.011
81 246906_at AT5G25475 [AP2/B3-like transcriptional factor family protein] -0.130 0.001
82 266110_at AT2G02080 AtIDD4, indeterminate(ID)-domain 4, IDD4, indeterminate(ID)-domain 4 -0.128 0.013
83 266982_at AT2G39500 unknown -0.128 0.009
84 257158_at AT3G24360 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] -0.127 -0.006
85 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] -0.127 0.120
86 264379_at AT2G25200 unknown -0.127 -0.140
87 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] -0.125 -0.295
88 249214_at AT5G42720 [Glycosyl hydrolase family 17 protein] -0.123 -0.179
89 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A -0.121 -0.108