4.0:Information of module
pif3 Dark 0h
In comparison with gct-2 mutant 9-day-old seedlings above-ground portions help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0035304 regulation of protein dephosphorylation BP 1.560e-07
GO:0035303 regulation of dephosphorylation BP 2.141e-07
GO:0016311 dephosphorylation BP 2.870e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010167 response to nitrate BP 2.550e-08
GO:0015706 nitrate transport BP 1.472e-07
GO:0001101 response to acid chemical BP 3.098e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pif3 Dark 0h		 Log2 signal ratio
gct-2 mutant 9-day-old seedlings above-ground portions
1 253040_at AT4G37800 XTH7, xyloglucan endotransglucosylase/hydrolase 7 0.414 -0.059
2 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 0.267 0.004
3 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] 0.251 -0.187
4 266279_at AT2G29290 [NAD(P)-binding Rossmann-fold superfamily protein] 0.248 -0.020
5 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] 0.235 -0.056
6 245713_at AT5G04370 NAMT1 0.222 -0.333
7 252983_at AT4G37980 ATCAD7, CAD7, CINNAMYL-ALCOHOL DEHYDROGENASE 7, ELI3, ELICITOR-ACTIVATED GENE 3, ELI3-1, elicitor-activated gene 3-1 0.213 -0.099
8 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.195 -0.167
9 246860_at AT5G25840 unknown 0.188 -0.247
10 260546_at AT2G43520 ATTI2, trypsin inhibitor protein 2, TI2, trypsin inhibitor protein 2 0.186 -0.036
11 264124_at AT1G79360 ATOCT2, organic cation/carnitine transporter 2, OCT2, ORGANIC CATION TRANSPORTER 2, OCT2, organic cation/carnitine transporter 2 0.181 -0.089
12 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 0.179 -0.231
13 246487_at AT5G16030 unknown 0.176 -0.020
14 260933_at AT1G02470 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.175 -0.010
15 247902_at AT5G57350 AHA3, H(+)-ATPase 3, ATAHA3, ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE, HA3, H(+)-ATPase 3 0.158 -0.093
16 248784_at AT5G47380 unknown 0.155 -0.074
17 254175_at AT4G24050 [NAD(P)-binding Rossmann-fold superfamily protein] 0.149 -0.024
18 247304_at AT5G63850 AAP4, amino acid permease 4 0.146 0.089
19 255652_at AT4G00950 MEE47, maternal effect embryo arrest 47 0.143 -0.028
20 258901_at AT3G05640 [Protein phosphatase 2C family protein] 0.142 -0.209
21 246891_at AT5G25490 [Ran BP2/NZF zinc finger-like superfamily protein] 0.140 0.021
22 261981_at AT1G33811 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.138 -0.063
23 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.136 -0.007
24 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.136 -0.084
25 265297_at AT2G14080 [Disease resistance protein (TIR-NBS-LRR class) family] 0.135 0.074
26 261175_at AT1G04800 [glycine-rich protein] 0.134 -0.097
27 246254_at AT4G36450 ATMPK14, mitogen-activated protein kinase 14, MPK14, MPK14, mitogen-activated protein kinase 14 0.131 0.022
28 262736_at AT1G28570 [SGNH hydrolase-type esterase superfamily protein] 0.129 0.040
29 249951_at AT5G18930 BUD2, BUSHY AND DWARF 2, SAMDC4 0.128 -0.014
30 248172_at AT5G54660 [HSP20-like chaperones superfamily protein] 0.126 0.034
31 259632_at AT1G56430 ATNAS4, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, NAS4, nicotianamine synthase 4 0.125 0.154
32 249927_at AT5G19220 ADG2, ADP GLUCOSE PYROPHOSPHORYLASE 2, APL1, ADP glucose pyrophosphorylase large subunit 1 0.125 -0.013
33 250910_at AT5G03720 AT-HSFA3, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, HSFA3, heat shock transcription factor A3 0.125 -0.145
34 257398_at AT2G01990 unknown 0.124 -0.032
35 257247_at AT3G24140 FMA, FAMA 0.122 -0.091
36 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 0.121 -0.088
37 265214_at AT1G05000 AtPFA-DSP1, PFA-DSP1, plant and fungi atypical dual-specificity phosphatase 1 0.121 0.053
38 264510_at AT1G09530 PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, phytochrome interacting factor 3, POC1, PHOTOCURRENT 1 -0.737 0.008
39 253894_at AT4G27150 AT2S2, SESA2, seed storage albumin 2 -0.484 1.255
40 253895_at AT4G27160 AT2S3, SESA3, seed storage albumin 3 -0.462 0.916
41 265095_at AT1G03880 CRB, CRUCIFERIN B, CRU2, cruciferin 2 -0.358 0.717
42 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 -0.330 0.028
43 253904_at AT4G27140 AT2S1, SESA1, seed storage albumin 1 -0.295 0.406
44 256815_at AT3G21380 [Mannose-binding lectin superfamily protein] -0.265 0.029
45 253930_at AT4G26740 AtCLO1, ATPXG1, ARABIDOPSIS THALIANA PEROXYGENASE 1, ATS1, seed gene 1, CLO1, CALEOSIN1 -0.255 0.326
46 253902_at AT4G27170 AT2S4, SESA4, seed storage albumin 4 -0.254 0.557
47 251766_at AT3G55910 unknown -0.217 0.127
48 248931_at AT5G46040 [Major facilitator superfamily protein] -0.217 -0.003
49 248125_at AT5G54740 SESA5, seed storage albumin 5 -0.191 0.709
50 262198_at AT1G53830 ATPME2, pectin methylesterase 2, PME2, pectin methylesterase 2 -0.191 -0.052
51 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 -0.177 -0.160
52 256938_at AT3G22500 ATECP31, LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31 -0.168 -0.023
53 245161_at AT2G33070 ATNSP2, NITRILE-SPECIFIER PROTEIN 2, NSP2, nitrile specifier protein 2 -0.158 0.002
54 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 -0.157 0.074
55 252054_at AT3G52540 ATOFP18, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, OFP18, ovate family protein 18 -0.154 -0.182
56 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 -0.149 0.578
57 252964_at AT4G38830 CRK26, cysteine-rich RLK (RECEPTOR-like protein kinase) 26 -0.128 0.107
58 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.127 0.167
59 247406_at AT5G62920 ARR6, response regulator 6 -0.119 -0.087
60 256185_at AT1G51700 ADOF1, DOF zinc finger protein 1, DOF1, DOF zinc finger protein 1 -0.118 0.033
61 262244_at AT1G48260 CIPK17, CBL-interacting protein kinase 17, SnRK3.21, SNF1-RELATED PROTEIN KINASE 3.21 -0.114 0.135
62 253408_at AT4G32950 [Protein phosphatase 2C family protein] -0.107 -0.088
63 245089_at AT2G45290 TKL2, transketolase 2 -0.102 0.036
64 248942_at AT5G45480 unknown -0.101 -0.042
65 261527_at AT1G14390 [Leucine-rich repeat protein kinase family protein] -0.101 -0.012
66 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 -0.099 -0.116
67 247600_at AT5G60890 ATMYB34, ATR1, ALTERED TRYPTOPHAN REGULATION 1, MYB34, myb domain protein 34 -0.098 -0.029
68 264794_at AT1G08670 [ENTH/VHS family protein] -0.096 0.057
69 257113_at AT3G20130 CYP705A22, cytochrome P450, family 705, subfamily A, polypeptide 22, GPS1, gravity persistence signal 1 -0.095 -0.000
70 262827_at AT1G13100 CYP71B29, cytochrome P450, family 71, subfamily B, polypeptide 29 -0.092 0.110
71 251071_at AT5G01950 [Leucine-rich repeat protein kinase family protein] -0.091 0.047
72 259887_at AT1G76360 [Protein kinase superfamily protein] -0.091 0.223
73 261336_at AT1G44790 [ChaC-like family protein] -0.088 -0.003