4.0:Information of module
root longitudinal zone-4 pH 4.6
In comparison with root cortex pH4.6 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0017038 protein import BP 1.312e-05
GO:0006606 protein import into nucleus BP 1.808e-05
GO:0044744 protein targeting to nucleus BP 1.808e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044711 single-organism biosynthetic process BP 6.250e-13
GO:0019748 secondary metabolic process BP 1.525e-12
GO:0009698 phenylpropanoid metabolic process BP 7.727e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root longitudinal zone-4 pH 4.6		 Log2 signal ratio
root cortex pH4.6
1 253502_at AT4G31940 CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4 1.515 -0.012
2 256593_at AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 1.130 0.038
3 248186_at AT5G53880 unknown 0.951 -0.015
4 251293_at AT3G61930 unknown 0.940 -0.080
5 249893_at AT5G22555 unknown 0.854 -0.064
6 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.843 -0.051
7 263515_at AT2G21640 unknown 0.797 0.465
8 260584_at AT2G43660 [Carbohydrate-binding X8 domain superfamily protein] 0.740 -0.045
9 263402_at AT2G04050 [MATE efflux family protein] 0.735 0.300
10 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.659 0.281
11 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 0.647 0.349
12 263401_at AT2G04070 [MATE efflux family protein] 0.641 -0.012
13 252510_at AT3G46270 [receptor protein kinase-related] 0.638 0.057
14 247208_at AT5G64870 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.614 0.072
15 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 0.605 -0.074
16 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.582 0.500
17 265014_at AT1G24430 [HXXXD-type acyl-transferase family protein] 0.567 -0.046
18 255945_at AT5G28610 unknown 0.524 -0.180
19 254660_at AT4G18250 [receptor serine/threonine kinase, putative] 0.516 0.050
20 264143_at AT1G79330 AMC6, ATMC5, metacaspase 5, ATMCP2b, metacaspase 2b, MC5, metacaspase 5, MCP2b, metacaspase 2b 0.511 0.011
21 248619_at AT5G49630 AAP6, amino acid permease 6 0.498 -0.118
22 260522_x_at AT2G41730 unknown 0.494 0.361
23 259676_at AT1G77730 [Pleckstrin homology (PH) domain superfamily protein] 0.493 -0.066
24 253796_at AT4G28460 unknown 0.467 0.435
25 246108_at AT5G28630 [glycine-rich protein] 0.456 -0.048
26 250796_at AT5G05300 unknown 0.449 -0.015
27 251507_at AT3G59080 [Eukaryotic aspartyl protease family protein] 0.438 -0.002
28 265850_at AT2G35720 OWL1, ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1 0.416 0.225
29 252694_at AT3G43630 [Vacuolar iron transporter (VIT) family protein] 0.414 -0.078
30 267140_at AT2G38250 [Homeodomain-like superfamily protein] 0.411 0.320
31 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 0.404 -0.075
32 260744_at AT1G15010 unknown 0.403 -0.036
33 246306_at AT3G51780 ATBAG4, BCL-2-associated athanogene 4, BAG4, BCL-2-associated athanogene 4 0.402 0.157
34 257135_at AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.398 -0.001
35 248618_at AT5G49620 AtMYB78, myb domain protein 78, MYB78, myb domain protein 78 0.373 -0.063
36 265955_at AT2G37280 ABCG33, ATP-binding cassette G33, ATPDR5, PLEIOTROPIC DRUG RESISTANCE 5, PDR5, pleiotropic drug resistance 5 0.370 -0.049
37 252362_at AT3G48500 PDE312, PIGMENT DEFECTIVE 312, PTAC10, PLASTID TRANSCRIPTIONALLY ACTIVE 10, TAC10 0.363 0.165
38 260540_at AT2G43500 NLP8, NIN-like protein 8 0.355 0.136
39 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.347 0.039
40 260528_at AT2G47260 ATWRKY23, WRKY DNA-BINDING PROTEIN 23, WRKY23, WRKY DNA-binding protein 23 0.343 0.149
41 254200_at AT4G24110 unknown 0.342 -0.012
42 257026_at AT3G19200 unknown 0.339 -0.165
43 262542_at AT1G34180 anac016, NAC domain containing protein 16, NAC016, NAC domain containing protein 16 0.335 -0.018
44 250875_at AT5G04020 [calmodulin binding] 0.333 0.019
45 262882_at AT1G64900 CYP89, CYP89A2, cytochrome P450, family 89, subfamily A, polypeptide 2 0.323 0.102
46 265685_at AT2G24430 ANAC038, NAC domain containing protein 38, ANAC039, Arabidopsis NAC domain containing protein 39, NAC038, NAC domain containing protein 38 0.315 -0.031
47 244945_at ATMG00110 ABCI2, ATP-binding cassette I2, CCB206, cytochrome C biogenesis 206 0.313 0.164
48 253159_at AT4G35570 HMGB5, high mobility group B5, HMGD, NFD05, NFD5, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5 0.308 0.013
49 265206_at AT2G36670 [Eukaryotic aspartyl protease family protein] 0.307 -0.030
50 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 0.306 -0.133
51 265334_at AT2G18370 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.306 0.045
52 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.303 0.095
53 266733_at AT2G03280 [O-fucosyltransferase family protein] 0.299 -0.149
54 252906_at AT4G39640 GGT1, gamma-glutamyl transpeptidase 1 0.297 0.043
55 258716_at AT3G09700 [Chaperone DnaJ-domain superfamily protein] 0.293 0.269
56 267266_at AT2G23150 ATNRAMP3, NRAMP3, natural resistance-associated macrophage protein 3 0.286 0.056
57 263616_at AT2G04680 [Cysteine/Histidine-rich C1 domain family protein] 0.285 -0.018
58 253295_at AT4G33760 [tRNA synthetase class II (D, K and N) family protein] 0.284 0.176
59 245056_at AT2G26480 UGT76D1, UDP-glucosyl transferase 76D1 0.283 -0.136
60 260293_at AT1G63670 TRM12, TON1 Recruiting Motif 12 0.282 0.047
61 256519_at AT1G66110 unknown 0.280 -0.042
62 256344_at AT1G72050 TFIIIA, transcription factor IIIA 0.279 0.120
63 247046_at AT5G66540 unknown 0.277 0.262
64 262759_at AT1G10800 unknown 0.276 0.019
65 254535_at AT4G19710 AK-HSDH, ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE, AK-HSDH II, aspartate kinase-homoserine dehydrogenase ii 0.274 -0.025
66 246919_at AT5G25460 DGR2, DUF642 L-GalL responsive gene 2 0.272 -0.020
67 249253_at AT5G42060 [DEK, chromatin associated protein] 0.271 0.138
68 249650_at AT5G37055 ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING 0.271 0.047
69 253598_at AT4G30800 [Nucleic acid-binding, OB-fold-like protein] 0.268 0.376
70 247685_at AT5G59680 [Leucine-rich repeat protein kinase family protein] 0.267 -0.076
71 260941_at AT1G44970 [Peroxidase superfamily protein] -1.057 -0.456
72 266356_at AT2G32300 UCC1, uclacyanin 1 -0.992 -0.443
73 249227_at AT5G42180 PER64, peroxidase 64 -0.990 -0.429
74 266978_at AT2G39430 [Disease resistance-responsive (dirigent-like protein) family protein] -0.953 -0.448
75 251226_at AT3G62680 ATPRP3, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, PRP3, proline-rich protein 3 -0.932 -0.192
76 259291_at AT3G11550 CASP2, Casparian strip membrane domain protein 2 -0.921 -0.460
77 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.900 -0.305
78 259180_at AT3G01680 AtSEOR1, Arabidopsis thaliana sieve element occlusion-related 1, SEOb, sieve element occlusion b, SEOR1, Sieve-Element-Occlusion-Related 1 -0.877 0.008
79 265645_at AT2G27370 CASP3, Casparian strip membrane domain protein 3 -0.858 -0.453
80 250474_at AT5G10230 ANN7, ANNEXIN 7, ANNAT7, annexin 7 -0.850 0.002
81 263227_at AT1G30750 unknown -0.848 -0.438
82 249686_at AT5G36140 CYP716A2, cytochrome P450, family 716, subfamily A, polypeptide 2 -0.830 -0.042
83 246228_at AT4G36430 [Peroxidase superfamily protein] -0.815 -0.037
84 249915_at AT5G22870 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.804 0.014
85 254907_at AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -0.782 -0.518
86 263284_at AT2G36100 CASP1, Casparian strip membrane domain protein 1 -0.779 -0.367
87 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.771 -0.249
88 267425_at AT2G34810 [FAD-binding Berberine family protein] -0.763 -0.241
89 254718_at AT4G13580 [Disease resistance-responsive (dirigent-like protein) family protein] -0.760 -0.372
90 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 -0.755 -0.179
91 261509_at AT1G71740 unknown -0.754 -0.482
92 260556_at AT2G43620 [Chitinase family protein] -0.738 -0.011
93 253684_at AT4G29690 [Alkaline-phosphatase-like family protein] -0.729 -0.394
94 247170_at AT5G65530 [Protein kinase superfamily protein] -0.729 -0.418
95 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] -0.707 -0.046
96 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.675 -0.111
97 253720_at AT4G29270 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.665 -0.094
98 249567_at AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.663 -0.060
99 267391_at AT2G44480 BGLU17, beta glucosidase 17 -0.653 -0.673
100 249518_at AT5G38610 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.641 -0.090
101 248750_at AT5G47530 [Auxin-responsive family protein] -0.587 -0.453
102 254313_at AT4G22460 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.579 -0.138
103 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 -0.575 -0.480
104 250717_at AT5G06200 CASP4, Casparian strip membrane domain protein 4 -0.569 -0.557
105 246825_at AT5G26260 [TRAF-like family protein] -0.556 -0.089
106 259801_at AT1G72230 [Cupredoxin superfamily protein] -0.555 -0.567
107 254823_at AT4G12580 unknown -0.554 -0.036
108 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 -0.550 0.020
109 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 -0.549 -0.001
110 255957_at AT1G22160 unknown -0.536 -0.146
111 263970_at AT2G42850 CYP718, cytochrome P450, family 718 -0.498 -0.186
112 266920_at AT2G45750 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.491 -0.086
113 266425_at AT2G41300 SSL1, strictosidine synthase-like 1 -0.489 -0.047
114 263599_at AT2G01830 AHK4, ARABIDOPSIS HISTIDINE KINASE 4, ATCRE1, CRE1, CYTOKININ RESPONSE 1, WOL, WOODEN LEG, WOL1, WOODEN LEG 1 -0.488 0.004
115 265471_at AT2G37130 [Peroxidase superfamily protein] -0.473 -0.171
116 256878_at AT3G26460 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.472 -0.067
117 265081_at AT1G03840 MGP, Magpie -0.472 -0.119
118 258938_at AT3G10080 [RmlC-like cupins superfamily protein] -0.469 -0.097
119 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 -0.466 -0.252
120 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 -0.461 0.012
121 250165_at AT5G15290 CASP5, Casparian strip membrane domain protein 5 -0.457 -0.570
122 260082_at AT1G78180 [Mitochondrial substrate carrier family protein] -0.452 -0.039
123 249327_at AT5G40890 ATCLC-A, chloride channel A, ATCLCA, CLC-A, chloride channel A, CLC-A, CHLORIDE CHANNEL-A, CLCA, CHLORIDE CHANNEL A -0.450 -0.069
124 257124_at AT3G20040 ATHXK4, HKL2, HEXOKINASE-LIKE 2 -0.438 -0.232
125 263892_at AT2G36890 ATMYB38, MYB DOMAIN PROTEIN 38, BIT1, BLUE INSENSITIVE TRAIT 1, MYB38, MYB DOMAIN PROTEIN 38, RAX2, REGULATOR OF AXILLARY MERISTEMS 2 -0.436 -0.027
126 256021_at AT1G58270 ZW9 -0.432 -0.148
127 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -0.432 -0.197
128 261953_at AT1G64440 REB1, ROOT EPIDERMAL BULGER1, RHD1, ROOT HAIR DEFECTIVE 1, UGE4, UDP-GLUCOSE 4-EPIMERASE -0.427 -0.070
129 246477_at AT5G16770 AtMYB9, myb domain protein 9, MYB9, myb domain protein 9 -0.412 -0.221
130 248731_at AT5G48060 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.401 -0.046
131 266900_at AT2G34610 unknown -0.397 0.008
132 262120_at AT1G02950 ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31, GSTF4, glutathione S-transferase F4 -0.392 0.008
133 246548_at AT5G14910 [Heavy metal transport/detoxification superfamily protein ] -0.389 0.246
134 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 -0.387 -0.307
135 258253_at AT3G26760 [NAD(P)-binding Rossmann-fold superfamily protein] -0.386 -0.233
136 254077_at AT4G25640 ATDTX35, detoxifying efflux carrier 35, DTX35, detoxifying efflux carrier 35, FFT, FLOWER FLAVONOID TRANSPORTER -0.384 0.042
137 266376_at AT2G14620 XTH10, xyloglucan endotransglucosylase/hydrolase 10 -0.384 -0.042
138 246238_at AT4G36670 AtPLT6, AtPMT6, PLT6, polyol transporter 6, PMT6, polyol/monosaccharide transporter 6 -0.380 -0.104
139 251243_at AT3G61870 unknown -0.380 -0.160