4.0:Information of module
root longitudinal zone-3 pH 4.6
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044712 single-organism catabolic process BP 5.363e-05
GO:0015698 inorganic anion transport BP 9.444e-05
GO:0010038 response to metal ion BP 1.063e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 3.170e-14
GO:0010053 root epidermal cell differentiation BP 7.534e-14
GO:0090627 plant epidermal cell differentiation BP 9.982e-14
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root longitudinal zone-3 pH 4.6		 Log2 signal ratio
bri1-116
1 266625_at AT2G35380 [Peroxidase superfamily protein] 1.101 -0.080
2 267121_at AT2G23540 [GDSL-like Lipase/Acylhydrolase superfamily protein] 1.069 -0.204
3 263998_at AT2G22510 [hydroxyproline-rich glycoprotein family protein] 1.046 0.042
4 260582_at AT2G47200 unknown 1.040 -0.051
5 249061_at AT5G44550 [Uncharacterised protein family (UPF0497)] 1.030 -0.091
6 245889_at AT5G09480 [hydroxyproline-rich glycoprotein family protein] 0.944 -0.123
7 246250_at AT4G36880 CP1, cysteine proteinase1, RDL1, RD21A-LIKE PROTEASE1 0.890 -0.263
8 252638_at AT3G44540 FAR4, fatty acid reductase 4 0.889 -0.037
9 261640_at AT1G49960 [Xanthine/uracil permease family protein] 0.870 0.017
10 257718_at AT3G18400 anac058, NAC domain containing protein 58, NAC058, NAC domain containing protein 58 0.785 0.011
11 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 0.769 0.094
12 252502_at AT3G46900 COPT2, copper transporter 2 0.766 -0.017
13 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.730 0.172
14 267144_at AT2G38110 ATGPAT6, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6, GPAT6, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6 0.727 0.033
15 252183_at AT3G50740 UGT72E1, UDP-glucosyl transferase 72E1 0.662 0.061
16 258625_at AT3G04370 PDLP4, plasmodesmata-located protein 4 0.631 -0.030
17 250674_at AT5G07130 LAC13, laccase 13 0.611 0.155
18 251545_at AT3G58810 ATMTP3, ARABIDOPSIS METAL TOLERANCE PROTEIN 3, ATMTPA2, MTP3, METAL TOLERANCE PROTEIN 3, MTPA2, metal tolerance protein A2 0.610 -0.218
19 254202_at AT4G24140 [alpha/beta-Hydrolases superfamily protein] 0.578 0.080
20 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 0.564 -0.224
21 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.545 -0.106
22 245735_at AT1G73410 ATMYB54, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, MYB54, myb domain protein 54 0.526 0.014
23 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 0.518 0.076
24 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] 0.511 0.033
25 266708_at AT2G03200 [Eukaryotic aspartyl protease family protein] 0.497 -0.304
26 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.482 0.560
27 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] 0.480 -0.116
28 251944_at AT3G53510 ABCG20, ATP-binding cassette G20 0.477 -0.019
29 259282_at AT3G11430 ATGPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5, GPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5 0.477 -0.028
30 254660_at AT4G18250 [receptor serine/threonine kinase, putative] 0.458 0.007
31 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 0.435 0.098
32 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.433 0.050
33 260335_at AT1G74000 SS3, strictosidine synthase 3 0.429 0.185
34 246652_at AT5G35190 EXT13, extensin 13 -1.195 -0.020
35 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] -1.087 -0.039
36 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.863 -0.081
37 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.767 -0.195
38 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.759 -0.038
39 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.690 -0.086
40 264347_at AT1G12040 LRX1, leucine-rich repeat/extensin 1 -0.685 0.043
41 246969_at AT5G24880 unknown -0.614 0.025
42 245546_at AT4G15290 ATCSLB05, ATCSLB5, CELLULOSE SYNTHASE LIKE 5, CSLB05 -0.564 -0.240
43 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -0.559 0.065
44 256283_at AT3G12540 unknown -0.542 0.058
45 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.521 -0.013
46 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 -0.521 0.236
47 256811_at AT3G21340 [Leucine-rich repeat protein kinase family protein] -0.505 -0.000
48 249814_at AT5G23840 [MD-2-related lipid recognition domain-containing protein] -0.491 -0.209
49 247087_at AT5G66330 [Leucine-rich repeat (LRR) family protein] -0.490 -0.024
50 248961_at AT5G45650 [subtilase family protein] -0.474 0.180
51 254912_at AT4G11230 [Riboflavin synthase-like superfamily protein] -0.455 0.080
52 263069_at AT2G17590 [Cysteine/Histidine-rich C1 domain family protein] -0.453 -0.069
53 266299_at AT2G29450 AT103-1A, ATGSTU1, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, ATGSTU5, glutathione S-transferase tau 5, GSTU5, glutathione S-transferase tau 5 -0.452 -0.178
54 256762_at AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 -0.437 0.019
55 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 -0.411 -0.768
56 252238_at AT3G49960 [Peroxidase superfamily protein] -0.404 0.025
57 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 -0.371 -0.083
58 251617_at AT3G58000 [VQ motif-containing protein] -0.329 0.101
59 261605_at AT1G49580 [Calcium-dependent protein kinase (CDPK) family protein] -0.319 -0.215
60 251723_at AT3G56230 [BTB/POZ domain-containing protein] -0.316 -0.173
61 255005_at AT4G09990 GXM2, glucuronoxylan methyltransferase 2 -0.314 0.013
62 261673_at AT1G18280 LTPG3, glycosylphosphatidylinositol-anchored lipid protein transfer 3 -0.310 0.026
63 261039_at AT1G17455 ELF4-L4, ELF4-like 4 -0.306 0.069
64 253113_at AT4G35985 [Senescence/dehydration-associated protein-related] -0.302 -0.015
65 245399_at AT4G17340 DELTA-TIP2, TIP2;2, tonoplast intrinsic protein 2;2 -0.287 -0.325