4.0:Information of module
root longitudinal zone-3 pH 4.6
In comparison with root cortex pH4.6 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044712 single-organism catabolic process BP 5.363e-05
GO:0015698 inorganic anion transport BP 9.444e-05
GO:0010038 response to metal ion BP 1.063e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 3.170e-14
GO:0010053 root epidermal cell differentiation BP 7.534e-14
GO:0090627 plant epidermal cell differentiation BP 9.982e-14
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root longitudinal zone-3 pH 4.6		 Log2 signal ratio
root cortex pH4.6
1 266625_at AT2G35380 [Peroxidase superfamily protein] 1.101 0.023
2 267121_at AT2G23540 [GDSL-like Lipase/Acylhydrolase superfamily protein] 1.069 -0.059
3 263998_at AT2G22510 [hydroxyproline-rich glycoprotein family protein] 1.046 -0.056
4 260582_at AT2G47200 unknown 1.040 0.029
5 249061_at AT5G44550 [Uncharacterised protein family (UPF0497)] 1.030 -0.042
6 245889_at AT5G09480 [hydroxyproline-rich glycoprotein family protein] 0.944 0.013
7 246250_at AT4G36880 CP1, cysteine proteinase1, RDL1, RD21A-LIKE PROTEASE1 0.890 0.214
8 252638_at AT3G44540 FAR4, fatty acid reductase 4 0.889 -0.002
9 261640_at AT1G49960 [Xanthine/uracil permease family protein] 0.870 -0.003
10 257718_at AT3G18400 anac058, NAC domain containing protein 58, NAC058, NAC domain containing protein 58 0.785 0.004
11 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 0.769 -0.011
12 252502_at AT3G46900 COPT2, copper transporter 2 0.766 -0.103
13 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.730 -0.037
14 267144_at AT2G38110 ATGPAT6, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6, GPAT6, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6 0.727 -0.110
15 252183_at AT3G50740 UGT72E1, UDP-glucosyl transferase 72E1 0.662 -0.073
16 258625_at AT3G04370 PDLP4, plasmodesmata-located protein 4 0.631 -0.026
17 250674_at AT5G07130 LAC13, laccase 13 0.611 -0.046
18 251545_at AT3G58810 ATMTP3, ARABIDOPSIS METAL TOLERANCE PROTEIN 3, ATMTPA2, MTP3, METAL TOLERANCE PROTEIN 3, MTPA2, metal tolerance protein A2 0.610 -0.035
19 254202_at AT4G24140 [alpha/beta-Hydrolases superfamily protein] 0.578 -0.016
20 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 0.564 0.107
21 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.545 0.036
22 245735_at AT1G73410 ATMYB54, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, MYB54, myb domain protein 54 0.526 0.003
23 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 0.518 0.014
24 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] 0.511 -0.014
25 266708_at AT2G03200 [Eukaryotic aspartyl protease family protein] 0.497 -0.141
26 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.482 0.247
27 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] 0.480 0.308
28 251944_at AT3G53510 ABCG20, ATP-binding cassette G20 0.477 -0.146
29 259282_at AT3G11430 ATGPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5, GPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5 0.477 -0.091
30 254660_at AT4G18250 [receptor serine/threonine kinase, putative] 0.458 0.050
31 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 0.435 -0.049
32 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.433 0.405
33 260335_at AT1G74000 SS3, strictosidine synthase 3 0.429 -0.051
34 246652_at AT5G35190 EXT13, extensin 13 -1.195 -0.168
35 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] -1.087 -0.162
36 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.863 -0.108
37 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.767 -0.475
38 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.759 -0.189
39 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.690 -0.149
40 264347_at AT1G12040 LRX1, leucine-rich repeat/extensin 1 -0.685 -0.007
41 246969_at AT5G24880 unknown -0.614 -0.081
42 245546_at AT4G15290 ATCSLB05, ATCSLB5, CELLULOSE SYNTHASE LIKE 5, CSLB05 -0.564 -0.435
43 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -0.559 -0.215
44 256283_at AT3G12540 unknown -0.542 -0.060
45 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.521 -0.139
46 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 -0.521 -0.307
47 256811_at AT3G21340 [Leucine-rich repeat protein kinase family protein] -0.505 0.030
48 249814_at AT5G23840 [MD-2-related lipid recognition domain-containing protein] -0.491 -0.425
49 247087_at AT5G66330 [Leucine-rich repeat (LRR) family protein] -0.490 -0.384
50 248961_at AT5G45650 [subtilase family protein] -0.474 -0.218
51 254912_at AT4G11230 [Riboflavin synthase-like superfamily protein] -0.455 0.096
52 263069_at AT2G17590 [Cysteine/Histidine-rich C1 domain family protein] -0.453 -0.223
53 266299_at AT2G29450 AT103-1A, ATGSTU1, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, ATGSTU5, glutathione S-transferase tau 5, GSTU5, glutathione S-transferase tau 5 -0.452 -0.102
54 256762_at AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 -0.437 -0.059
55 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 -0.411 -0.141
56 252238_at AT3G49960 [Peroxidase superfamily protein] -0.404 -0.144
57 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 -0.371 -0.297
58 251617_at AT3G58000 [VQ motif-containing protein] -0.329 -0.061
59 261605_at AT1G49580 [Calcium-dependent protein kinase (CDPK) family protein] -0.319 -0.256
60 251723_at AT3G56230 [BTB/POZ domain-containing protein] -0.316 -0.263
61 255005_at AT4G09990 GXM2, glucuronoxylan methyltransferase 2 -0.314 -0.195
62 261673_at AT1G18280 LTPG3, glycosylphosphatidylinositol-anchored lipid protein transfer 3 -0.310 -0.156
63 261039_at AT1G17455 ELF4-L4, ELF4-like 4 -0.306 -0.113
64 253113_at AT4G35985 [Senescence/dehydration-associated protein-related] -0.302 -0.185
65 245399_at AT4G17340 DELTA-TIP2, TIP2;2, tonoplast intrinsic protein 2;2 -0.287 -0.294