4.0:Information of module
root longitudinal zone-2 pH 4.6
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050832 defense response to fungus BP 1.225e-03
GO:0043900 regulation of multi-organism process BP 1.598e-03
GO:0055114 oxidation-reduction process BP 2.960e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 6.553e-06
GO:0044085 cellular component biogenesis BP 7.601e-06
GO:0065003 macromolecular complex assembly BP 6.019e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root longitudinal zone-2 pH 4.6		 Log2 signal ratio
Leafminer damaged seedlings
1 253666_at AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 1.186 0.127
2 253332_at AT4G33420 [Peroxidase superfamily protein] 1.094 0.053
3 256593_at AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 1.077 0.062
4 246375_at AT1G51830 [Leucine-rich repeat protein kinase family protein] 0.922 0.017
5 264580_at AT1G05340 unknown 0.781 0.981
6 258064_at AT3G14680 CYP72A14, cytochrome P450, family 72, subfamily A, polypeptide 14 0.754 0.024
7 256073_at AT1G18100 E12A11, MFT, MOTHER OF FT AND TFL1 0.749 0.003
8 254201_at AT4G24130 unknown 0.649 0.154
9 258661_at AT3G02930 unknown 0.585 -0.111
10 261211_at AT1G12780 ATUGE1, A. THALIANA UDP-GLC 4-EPIMERASE 1, UGE1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 0.556 0.132
11 258091_at AT3G14560 unknown 0.427 0.432
12 265728_at AT2G31990 [Exostosin family protein] 0.403 0.243
13 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 0.375 1.009
14 254707_at AT4G18010 5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, AT5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, IP5PII, INOSITOL(1,4,5)P3 5-PHOSPHATASE II 0.356 0.370
15 257502_at AT1G78110 unknown 0.324 -0.190
16 250497_at AT5G09630 [LisH/CRA/RING-U-box domains-containing protein] 0.324 0.176
17 254419_at AT4G21490 NDB3, NAD(P)H dehydrogenase B3 0.322 -0.051
18 246944_at AT5G25450 [Cytochrome bd ubiquinol oxidase, 14kDa subunit] 0.303 0.060
19 260993_at AT1G12140 FMO GS-OX5, flavin-monooxygenase glucosinolate S-oxygenase 5 0.298 0.035
20 249652_at AT5G37070 unknown 0.296 0.155
21 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.294 0.198
22 247628_at AT5G60400 unknown 0.275 -0.161
23 246901_at AT5G25630 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.271 -0.287
24 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.269 0.215
25 245073_at AT2G23210 [UDP-Glycosyltransferase superfamily protein] 0.261 -0.073
26 260415_at AT1G69790 [Protein kinase superfamily protein] 0.259 0.399
27 260951_at AT1G06150 EMB1444, EMBRYO DEFECTIVE 1444 0.257 -0.072
28 263632_at AT2G04795 unknown 0.257 -0.423
29 262755_at AT1G16360 [LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein] 0.255 -0.010
30 263703_at AT1G31170 ATSRX, SULFIREDOXIN, SRX, sulfiredoxin 0.255 0.004
31 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 0.253 0.257
32 267035_at AT2G38400 AGT3, alanine:glyoxylate aminotransferase 3 0.251 0.364
33 267385_at AT2G44380 [Cysteine/Histidine-rich C1 domain family protein] 0.249 0.229
34 257947_at AT3G21720 ICL, isocitrate lyase 0.233 -0.037
35 259528_at AT1G12330 unknown 0.230 -0.534
36 247229_at AT5G65160 TPR14, tetratricopeptide repeat 14 0.227 0.014
37 266480_at AT2G31130 unknown 0.224 -0.001
38 250327_at AT5G12050 unknown 0.218 -0.252
39 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] 0.213 0.872
40 267488_at AT2G19110 ATHMA4, ARABIDOPSIS HEAVY METAL ATPASE 4, HMA4, heavy metal atpase 4 0.213 -0.113
41 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 -0.599 0.531
42 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.579 -0.028
43 265683_at AT2G24400 SAUR38, SMALL AUXIN UPREGULATED RNA 38 -0.571 0.011
44 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.552 0.325
45 258054_at AT3G16240 AQP1, ATTIP2;1, DELTA-TIP, delta tonoplast integral protein, DELTA-TIP1, TIP2;1 -0.504 -0.064
46 252437_at AT3G47380 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.492 0.643
47 252302_at AT3G49190 [O-acyltransferase (WSD1-like) family protein] -0.486 0.065
48 262658_at AT1G14220 [Ribonuclease T2 family protein] -0.449 -0.036
49 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] -0.425 0.500
50 260067_at AT1G73780 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.420 0.040
51 267164_at AT2G37700 [Fatty acid hydroxylase superfamily] -0.384 0.051
52 249766_at AT5G24070 [Peroxidase superfamily protein] -0.379 0.009
53 254361_at AT4G22212 [Arabidopsis defensin-like protein] -0.338 0.007
54 253270_at AT4G34160 CYCD3, CYCD3;1, CYCLIN D3;1 -0.328 -0.367
55 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.321 0.005
56 261158_at AT1G34500 [MBOAT (membrane bound O-acyl transferase) family protein] -0.321 -0.024
57 247139_at AT5G66090 unknown -0.318 -0.064
58 245303_at AT4G17010 unknown -0.310 0.058
59 255535_at AT4G01790 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] -0.301 0.090
60 252446_at AT3G47010 [Glycosyl hydrolase family protein] -0.289 -0.253
61 255260_at AT4G05040 [ankyrin repeat family protein] -0.287 -0.236
62 246565_at AT5G15530 BCCP2, biotin carboxyl carrier protein 2, CAC1-B -0.286 -0.122
63 247991_at AT5G56320 ATEXP14, ATEXPA14, expansin A14, ATHEXP ALPHA 1.5, EXP14, EXPANSIN 14, EXPA14, expansin A14 -0.285 0.029
64 255542_at AT4G01860 [Transducin family protein / WD-40 repeat family protein] -0.281 -0.025
65 266210_at AT2G27530 PGY1, PIGGYBACK1 -0.278 -0.002
66 263610_at AT2G16230 [O-Glycosyl hydrolases family 17 protein] -0.273 0.031
67 260371_at AT1G69690 AtTCP15, TCP15, TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15 -0.265 -0.233
68 252852_at AT4G39900 unknown -0.261 -0.287
69 261639_at AT1G50010 TUA2, tubulin alpha-2 chain -0.244 -0.122
70 253690_at AT4G29550 unknown -0.241 -0.016
71 250471_at AT5G10170 ATMIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, MIPS3, myo-inositol-1-phosphate synthase 3 -0.240 -0.268
72 256847_at AT3G27950 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.239 -0.027
73 265545_at AT2G28250 NCRK -0.239 -0.147
74 246738_at AT5G27740 EMB161, EMBRYO DEFECTIVE 161, EMB251, EMBRYO DEFECTIVE 251, EMB2775, EMBRYO DEFECTIVE 2775, RFC3, replication factor C 3 -0.235 -0.064
75 260368_at AT1G69700 ATHVA22C, HVA22 homologue C, HVA22C, HVA22 homologue C -0.232 -0.189
76 246274_at AT4G36620 GATA19, GATA transcription factor 19, HANL2, hanaba taranu like 2 -0.232 -0.101
77 251805_at AT3G55530 AtSDIR1, SDIR1, SALT- AND DROUGHT-INDUCED RING FINGER1 -0.227 -0.016
78 256527_at AT1G66100 [Plant thionin] -0.221 0.238
79 258633_at AT3G07990 SCPL27, serine carboxypeptidase-like 27 -0.220 -0.131