4.0:Information of module
Whole root - low pH 3H
In comparison with root cortex pH4.6 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.054e-12
GO:0010033 response to organic substance BP 2.426e-12
GO:0014070 response to organic cyclic compound BP 6.170e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009218 pyrimidine ribonucleotide metabolic proc... BP 2.283e-05
GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 3.166e-05
GO:0006220 pyrimidine nucleotide metabolic process BP 3.522e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Whole root - low pH 3H		 Log2 signal ratio
root cortex pH4.6
1 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 1.013 0.290
2 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.927 0.095
3 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.800 0.281
4 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.697 0.370
5 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.696 0.161
6 260522_x_at AT2G41730 unknown 0.668 0.361
7 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 0.595 0.283
8 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.580 0.044
9 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.579 0.405
10 247047_at AT5G66650 unknown 0.575 -0.017
11 255064_at AT4G08950 EXO, EXORDIUM 0.555 0.094
12 259293_at AT3G11580 [AP2/B3-like transcriptional factor family protein] 0.530 0.140
13 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.514 -0.100
14 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 0.506 0.578
15 248870_at AT5G46710 [PLATZ transcription factor family protein] 0.451 0.011
16 256446_at AT3G11110 [RING/U-box superfamily protein] 0.413 0.031
17 262045_at AT1G80240 DGR1, DUF642 L-GalL responsive gene 1 0.375 0.245
18 257140_at AT3G28910 ATMYB30, MYB30, myb domain protein 30 0.355 -0.099
19 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 0.352 0.328
20 263151_at AT1G54120 unknown 0.340 -0.097
21 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.328 0.062
22 255695_at AT4G00080 UNE11, unfertilized embryo sac 11 0.312 -0.083
23 263800_at AT2G24600 [Ankyrin repeat family protein] 0.305 -0.171
24 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 0.302 0.046
25 250024_at AT5G18270 ANAC087, Arabidopsis NAC domain containing protein 87 0.301 0.274
26 247674_at AT5G59930 [Cysteine/Histidine-rich C1 domain family protein] 0.301 0.135
27 253915_at AT4G27280 [Calcium-binding EF-hand family protein] 0.299 -0.031
28 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.297 0.149
29 260406_at AT1G69920 ATGSTU12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, GSTU12, glutathione S-transferase TAU 12 0.279 0.008
30 260472_at AT1G10990 unknown 0.264 0.003
31 247704_at AT5G59510 DVL18, DEVIL 18, RTFL5, ROTUNDIFOLIA like 5 0.264 -0.052
32 266963_at AT2G39450 ATMTP11, MTP11 0.262 -0.013
33 253666_at AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 0.258 0.176
34 254424_at AT4G21510 AtFBS2, FBS2, F-box stress induced 2 0.258 0.060
35 264989_at AT1G27200 unknown 0.256 0.004
36 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 0.246 0.072
37 250435_at AT5G10380 ATRING1, RING1 0.234 -0.154
38 266606_at AT2G46310 CRF5, cytokinin response factor 5 0.234 -0.065
39 246584_at AT5G14730 unknown 0.233 0.044
40 262525_at AT1G17060 CHI2, CHIBI 2, CYP72C1, cytochrome p450 72c1, SHK1, SHRINK 1, SOB7, SUPPRESSOR OF PHYB-4 7 0.232 -0.017
41 262624_at AT1G06450 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.232 0.207
42 265276_at AT2G28400 unknown 0.230 -0.021
43 267132_at AT2G23420 NAPRT2, nicotinate phosphoribosyltransferase 2 0.222 0.066
44 253824_at AT4G27940 ATMTM1, ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, MTM1, manganese tracking factor for mitochondrial SOD2 0.213 0.224
45 260495_at AT2G41810 unknown -0.896 -0.330
46 265683_at AT2G24400 SAUR38, SMALL AUXIN UPREGULATED RNA 38 -0.624 -0.141
47 255591_at AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 -0.577 -0.198
48 248408_at AT5G51520 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.561 -0.123
49 261275_at AT1G26700 ATMLO14, MILDEW RESISTANCE LOCUS O 14, MLO14, MILDEW RESISTANCE LOCUS O 14 -0.505 -0.209
50 267222_at AT2G43880 [Pectin lyase-like superfamily protein] -0.477 -0.177
51 252437_at AT3G47380 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.446 -0.178
52 257582_at AT1G50720 [Stigma-specific Stig1 family protein] -0.412 -0.073
53 250992_at AT5G02260 ATEXP9, ATEXPA9, expansin A9, ATHEXP ALPHA 1.10, EXP9, EXPA9, expansin A9 -0.362 0.008
54 248990_at AT5G45210 [Disease resistance protein (TIR-NBS-LRR class) family] -0.348 -0.437
55 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] -0.346 0.001
56 257460_at AT1G75580 SAUR51, SMALL AUXIN UPREGULATED RNA 51 -0.300 -0.065
57 263959_at AT2G36210 SAUR45, SMALL AUXIN UPREGULATED RNA 45 -0.298 -0.457
58 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] -0.286 -0.237
59 262915_at AT1G59940 ARR3, response regulator 3 -0.272 -0.002
60 259222_at AT3G03680 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.264 -0.072
61 248853_at AT5G46570 BSK2, brassinosteroid-signaling kinase 2 -0.261 -0.061
62 258034_at AT3G21300 [RNA methyltransferase family protein] -0.260 0.164
63 263373_at AT2G20515 unknown -0.252 -0.083
64 267164_at AT2G37700 [Fatty acid hydroxylase superfamily] -0.250 -0.013
65 264114_at AT2G31270 ATCDT1A, ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, CDT1, ARABIDOPSIS HOMOLOG OF YEAST CDT1, CDT1A, homolog of yeast CDT1 A -0.244 -0.030
66 252302_at AT3G49190 [O-acyltransferase (WSD1-like) family protein] -0.240 -0.068
67 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.228 -0.209
68 254490_at AT4G20320 [CTP synthase family protein] -0.227 0.087
69 266079_at AT2G37860 LCD1, LOWER CELL DENSITY 1 -0.227 0.024
70 261628_at AT1G50000 [methyltransferases] -0.226 0.073
71 267439_at AT2G19060 [SGNH hydrolase-type esterase superfamily protein] -0.223 -0.046
72 247352_at AT5G63650 SNRK2-5, SNRK2.5, SNF1-related protein kinase 2.5, SRK2H, SNF1-RELATED PROTEIN KINASE 2H -0.222 -0.017
73 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.217 -0.108
74 262863_at AT1G64910 [UDP-Glycosyltransferase superfamily protein] -0.215 -0.189
75 257131_at AT3G20240 [Mitochondrial substrate carrier family protein] -0.206 0.050
76 254284_at AT4G22910 CCS52A1, cell cycle switch protein 52 A1, FZR2, FIZZY-related 2 -0.205 -0.063
77 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] -0.195 -0.035
78 254854_at AT4G12130 [Glycine cleavage T-protein family] -0.193 0.103
79 259683_at AT1G63050 AtLPLAT2, LPCAT2, lysophosphatidylcholine acyltransferase 2, LPLAT2, lysophospholipid acyltransferase 2 -0.193 -0.025
80 250224_at AT5G14150 unknown -0.189 -0.109
81 250746_at AT5G05880 [UDP-Glycosyltransferase superfamily protein] -0.184 0.072
82 259899_at AT1G71210 [Pentatricopeptide repeat (PPR) superfamily protein] -0.183 0.225
83 258799_at AT3G04770 RPSAb, 40s ribosomal protein SA B -0.179 0.090
84 262708_at AT1G16190 RAD23A, RADIATION SENSITIVE23A -0.177 -0.034
85 246229_at AT4G37160 sks15, SKU5 similar 15 -0.171 0.018
86 263474_at AT2G31725 unknown -0.171 0.106
87 247893_at AT5G57980 RPB5C, RNA polymerase II fifth largest subunit, C -0.169 0.076