4.0:Information of module
Whole root - low pH 30min
In comparison with sid2-2 24hpi A. brassicicola help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009612 response to mechanical stimulus BP 6.747e-06
GO:0009626 plant-type hypersensitive response BP 2.195e-04
GO:0034050 host programmed cell death induced by sy... BP 2.195e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009733 response to auxin BP 6.160e-03
GO:0010646 regulation of cell communication BP 1.582e-02
GO:0009834 plant-type secondary cell wall biogenesi... BP 1.767e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Whole root - low pH 30min		 Log2 signal ratio
sid2-2 24hpi A. brassicicola
1 255064_at AT4G08950 EXO, EXORDIUM 0.337 0.076
2 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 0.308 -0.140
3 253915_at AT4G27280 [Calcium-binding EF-hand family protein] 0.286 -0.087
4 267076_at AT2G41090 [Calcium-binding EF-hand family protein] 0.273 -0.140
5 260816_at AT1G06930 unknown 0.267 -0.054
6 257645_at AT3G25790 [myb-like transcription factor family protein] 0.220 0.090
7 252997_at AT4G38400 ATEXLA2, expansin-like A2, ATEXPL2, ATHEXP BETA 2.2, EXLA2, expansin-like A2, EXPL2, EXPANSIN L2 0.202 -0.045
8 256775_at AT3G13770 [Pentatricopeptide repeat (PPR) superfamily protein] 0.200 -0.197
9 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 0.187 -0.125
10 250910_at AT5G03720 AT-HSFA3, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, HSFA3, heat shock transcription factor A3 0.182 -0.241
11 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.180 -0.314
12 257140_at AT3G28910 ATMYB30, MYB30, myb domain protein 30 0.175 -0.090
13 266908_at AT2G34650 ABR, ABRUPTUS, PID, PINOID 0.166 -0.239
14 263442_at AT2G28605 [Photosystem II reaction center PsbP family protein] 0.154 -0.057
15 256183_at AT1G51660 ATMEK4, ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, ATMKK4, ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, MKK4, mitogen-activated protein kinase kinase 4 0.141 -0.193
16 263041_at AT1G23320 TAR1, tryptophan aminotransferase related 1 0.135 -0.068
17 250565_at AT5G08000 E13L3, glucan endo-1,3-beta-glucosidase-like protein 3, PDCB2, PLASMODESMATA CALLOSE-BINDING PROTEIN 2 0.132 -0.295
18 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase 0.132 -0.734
19 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.131 0.550
20 255080_at AT4G09030 AGP10, arabinogalactan protein 10, ATAGP10 0.130 -0.002
21 252994_at AT4G38480 [Transducin/WD40 repeat-like superfamily protein] 0.129 -0.170
22 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.128 0.065
23 257617_at AT3G26550 [Cysteine/Histidine-rich C1 domain family protein] -0.243 0.017
24 257427_at AT1G79060 unknown -0.205 0.257
25 259791_at AT1G29700 [Metallo-hydrolase/oxidoreductase superfamily protein] -0.198 0.109
26 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.194 -0.008
27 249047_at AT5G44410 [FAD-binding Berberine family protein] -0.178 0.140
28 251080_at AT5G02010 ATROPGEF7, ROPGEF7, ROP (rho of plants) guanine nucleotide exchange factor 7 -0.177 0.026
29 249018_at AT5G44770 [Cysteine/Histidine-rich C1 domain family protein] -0.169 0.006
30 263850_at AT2G04480 unknown -0.161 0.036
31 251342_at AT3G60690 SAUR59, SMALL AUXIN UPREGULATED RNA 59 -0.145 0.063
32 251903_at AT3G54120 [Reticulon family protein] -0.144 -0.080
33 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.141 0.811
34 248408_at AT5G51520 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.141 -0.065
35 260903_at AT1G02460 [Pectin lyase-like superfamily protein] -0.124 0.069
36 259150_at AT3G10320 [Glycosyltransferase family 61 protein] -0.116 0.557
37 247005_at AT5G67520 adenosine-5'-phosphosulfate (APS) kinase 4 -0.111 0.397
38 248052_at AT5G55800 [Cysteine/Histidine-rich C1 domain family protein] -0.111 -0.016
39 246262_at AT1G31790 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.111 -0.044
40 264210_at AT1G22640 ATMYB3, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, MYB3, myb domain protein 3 -0.108 0.068
41 249893_at AT5G22555 unknown -0.106 -0.026
42 259840_at AT1G52230 PSAH-2, PHOTOSYSTEM I SUBUNIT H-2, PSAH2, photosystem I subunit H2, PSI-H -0.101 -0.008
43 264917_at AT1G60500 DRP4C, Dynamin related protein 4C -0.095 -0.031